TCONS_00045971-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045971-protein
Unique NameTCONS_00045971-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045971-protein ID=TCONS_00045971-protein|Name=TCONS_00045971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MAQSMSDLKQKIETYRQQFDDSFNEIVNELVSEDEALPELKQAAGCLRKA
LEYNTFDGKKSRGLMVICTVDFLRKGSPSENEVKKAICLGWCIEILQAVF
LIADDVMDRSELRRGRPCWYKKVGLVSINDTYLMEQCIYKLIGEHFKDQP
YLFELYKAFHRITYLTAMGQELDMLASEPIDQEFSIDLFTEEKYKAIVKY
KTAYYSFYLPVSLGMHIAGVTDPKMFKEAELVLMKLGEYFQIQDDFIDCY
GDPAVTGKIGRDIEDAKCSWLIIQALKIATIEQREILKQNYGKDDAECVR
FVKDLYKELNLEKVYSEYEEESYKSICQMIQSHENGFPKELFLFLVMKIY
KRQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029384XLOC_029384Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045971TCONS_00045971Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom
IPR000092Polyprenyl_synt
IPR033749Polyprenyl_synt_CS
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availableSFLDSFLDG01017Polyprenyl_Transferase_Likecoord: 4..354
e-value: 0.0
score: 280.7
NoneNo IPR availableSFLDSFLDS00005Isoprenoid_Synthase_Type_Icoord: 47..333
e-value: 0.0
score: 210.6
NoneNo IPR availableCDDcd00685Trans_IPPS_HTcoord: 47..352
e-value: 1.77804E-67
score: 214.337
IPR008949Isoprenoid synthase domainGENE3D1.10.600.10coord: 8..354
e-value: 4.3E-81
score: 271.9
IPR008949Isoprenoid synthase domainSUPERFAMILY48576Terpenoid synthasescoord: 12..353
IPR000092Polyprenyl synthetasePFAMPF00348polyprenyl_syntcoord: 47..308
e-value: 8.9E-82
score: 273.9
IPR033749Polyprenyl synthetase, conserved sitePROSITEPS00723POLYPRENYL_SYNTHASE_1coord: 101..115
IPR033749Polyprenyl synthetase, conserved sitePROSITEPS00444POLYPRENYL_SYNTHASE_2coord: 236..248

Blast
[Close]
BLAST of TCONS_00045971-protein vs. Swiss-Prot (Human)
Match: FPPS (Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 317.775 bits (813), Expect = 2.616e-106
Identity = 159/344 (46.22%), Postives = 235/344 (68.31%), Query Frame = 0 
Query:   16 RQQFDDSFNEIVNELVSEDEALPELKQAAGCLRKALEYNTFDGKKSRGLMVICTV-DFLRKGSPSENEVKKAICLGWCIEILQAVFLIADDVMDRSELRRGRPCWYKK--VGLVSINDTYLMEQCIYKLIGEHFKDQPYLFELYKAFHRITYLTAMGQELDMLASEPIDQEFSIDL--FTEEKYKAIVKYKTAYYSFYLPVSLGMHIAGVTDPKMFKEAELVLMKLGEYFQIQDDFIDCYGDPAVTGKIGRDIEDAKCSWLIIQALKIATIEQREILKQNYGKDDAECVRFVKDLYKELNLEKVYSEYEEESYKSICQMIQSHENGFPKELFLFLVMKIYKRQK 354
            +Q F   F++IV  L  ++   PE+  A   L++ LEYN   GK +RGL V+    + +       + +++A  +GWC+E+LQA FL+ADD+MD S  RRG+ CWY+K  VGL +IND  L+E CIY+L+  + ++QPY   L + F + +Y T +GQ LD+L +     + ++DL  FTE++YK+IVKYKTA+YSFYLP++  M++AG+   K    A+ +L+++GE+FQIQDD++D +GDP+VTGKIG DI+D KCSWL++Q L+ AT EQ +ILK+NYG+ +AE V  VK LY+EL+L  V+ +YEE+SY  I  +I+ +    P  +FL L  KIYKR+K
Sbjct:   80 KQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAP----QGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 419
The following BLAST results are available for this feature:
BLAST of TCONS_00045971-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FPPS2.616e-10646.22Farnesyl pyrophosphate synthase OS=Homo sapiens GN... [more]
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