TCONS_00045971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045971
Unique NameTCONS_00045971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045971 ID=TCONS_00045971|Name=TCONS_00045971|organism=Clytia hemisphaerica|type=transcript|length=1810bp
TTCACAGTAATTTGACAGAGCAAATCATATTATATATATTCATCATTATT
TCacaaacagaaaaacaaaacaaaattatgttttaaaaattagaaagaaa
taaaaaatactaGTGCTTAATCTTAAAGACTGTCCGCTATCATCTGAGGG
TGATACCTACAACTTTTATCGCACAAAACAGAaggatttcaaaagaaatc
ccagaaatagtttttttttcaattttcgagcaGTTTATCAGtaaagtaaa
caatgattactTTAAATATTTCAGAATACGGAAGCAGGCAGATTTAAATG
ATGCCTTTTCTCGGCGGTGtagttttataaaaattatctactatttgtat
ttttaaaaaccaaaactagaaaataaaatgaaaaatatgaattatttctt
attataaatattcaaatacataaatccaaaaaattgcTTTCAGTCGGAAA
AAAATACTCTTAAAATGTGATATAGTTGCTAATAAGAAAACTCtctaaaa
cataaaacaaaatcCTGCTAAGTCTACTTTTGGCgtttgtagattttcat
tacAAGAAATAAGAAGAGTTCCTTCGGGAAACCATTTTCATGTGATTGAA
TCATTTGACAAATTGATTTATAACTTTCCTCCTCGTATTCGGAGTAGACT
TTCTCTAAATTTAATTCTTTATACAAGTCTTTGACAAATCTCACGCATTC
AGCGTCGTCTTTCCCATAATTTTGTTTCAAGATCTCTCGTTGTTCAATTG
TGGCGATTTTCAGTGCTTGAATGATAAGCCATGAACATTTAGCATCTTCA
ATATCTCGACCAATTTTACCAGTCACTGCAGGGTCACCATAACAATCAAT
GAAATCATCCTGGATTTGGAAATACTCACCCAGCTTCATTAACACTAATT
CGGCTTCTTTAAACATTTTGGGATCTGTGACTCCAGCGATATGCATTCCC
AAAGACACTGGTAGATAAAACGAATAGTAAGCCGTTTTATATTTCACGAT
AGCTTTGTATTTTTCCTCCGTAAACAAATCAATACTGAATTCTTGATCGA
TCGGTTCAGAGGCTAACATATCCAGCTCTTGACCCATTGCCGTTAAATAA
GTGATTCTATGAAAAGCTTTGTAGAGCTCAAACAAATACGGCTGGTCCTT
AAAATGTTCACCTATAAGTTTATAAATACACTGCTCCATAAGATACGTAT
CATTAATTGAAACTAAACCCACTTTCTTGTACCAACAAGGGCGGCCGCGT
CTCAATTCCGAGCGATCCATGACGTCATCGGCGATCAAGAAAACAGCTTG
AAGAATTTCAATACACCAACCCAAACAAATAGCTTTCTTAACTTCATTCT
CAGATGGGCTTCCTTTTCGTAAGAAATCCACTGTGCAGATGACCATTAAA
CCACGCGATTTCTTCCCATCAAAGGTGTTATATTCGAGCGCTTTGCGAAG
ACATCCGGCAGCCTGTTTTAACTCAGGTAATGCTTCATCTTCGCTAACCA
GCTCGTTGACAATCTCATTAAATGAATCATCGAACTGTTGACGATAGGTT
TCGATCTTTTGCTTCAAATCACTCATAGATTGTGCCATTATTGTTGTAGT
TTTATGCTTGTTTgttgcttttgttttgttttgttttctaagGAAATATG
GGAGAAAGATCAGTAATATGGACAAATATGAAACTGCTGAAAAACAGACA
AGAAGATTTAGGACtaggaaaattacaaaatgttctttaaatcAAGAAGT
TTATTCAAGAAGGATTGTCCATCCTTCCTTCCCCTGAATATTTTctacag
aaaaagaaaa
Run BLAST on NCBI

protein sequence of TCONS_00045971-protein

>TCONS_00045971-protein ID=TCONS_00045971-protein|Name=TCONS_00045971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MAQSMSDLKQKIETYRQQFDDSFNEIVNELVSEDEALPELKQAAGCLRKA
LEYNTFDGKKSRGLMVICTVDFLRKGSPSENEVKKAICLGWCIEILQAVF
LIADDVMDRSELRRGRPCWYKKVGLVSINDTYLMEQCIYKLIGEHFKDQP
YLFELYKAFHRITYLTAMGQELDMLASEPIDQEFSIDLFTEEKYKAIVKY
KTAYYSFYLPVSLGMHIAGVTDPKMFKEAELVLMKLGEYFQIQDDFIDCY
GDPAVTGKIGRDIEDAKCSWLIIQALKIATIEQREILKQNYGKDDAECVR
FVKDLYKELNLEKVYSEYEEESYKSICQMIQSHENGFPKELFLFLVMKIY
KRQK
Run BLAST on NCBI

transcript from alignment at scaffold_104:274456..276265

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045971 ID=TCONS_00045971|Name=TCONS_00045971|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_104:274456..276265 (Clytia hemisphaerica)
ttttctttttctgtagAAAATATTCAGGGGAAGGAAGGATGGACAATCCT
TCTTGAATAAACTTCTTgatttaaagaacattttgtaattttcctaGTCC
TAAATCTTCTTGTCTGTTTTTCAGCAGTTTCATATTTGTCCATATTACTG
ATCTTTCTCCCATATTTCcttagaaaacaaaacaaaacaaaagcaacAAA
CAAGCATAAAACTACAACAATAATGGCACAATCTATGAGTGATTTGAAGC
AAAAGATCGAAACCTATCGTCAACAGTTCGATGATTCATTTAATGAGATT
GTCAACGAGCTGGTTAGCGAAGATGAAGCATTACCTGAGTTAAAACAGGC
TGCCGGATGTCTTCGCAAAGCGCTCGAATATAACACCTTTGATGGGAAGA
AATCGCGTGGTTTAATGGTCATCTGCACAGTGGATTTCTTACGAAAAGGA
AGCCCATCTGAGAATGAAGTTAAGAAAGCTATTTGTTTGGGTTGGTGTAT
TGAAATTCTTCAAGCTGTTTTCTTGATCGCCGATGACGTCATGGATCGCT
CGGAATTGAGACGCGGCCGCCCTTGTTGGTACAAGAAAGTGGGTTTAGTT
TCAATTAATGATACGTATCTTATGGAGCAGTGTATTTATAAACTTATAGG
TGAACATTTTAAGGACCAGCCGTATTTGTTTGAGCTCTACAAAGCTTTTC
ATAGAATCACTTATTTAACGGCAATGGGTCAAGAGCTGGATATGTTAGCC
TCTGAACCGATCGATCAAGAATTCAGTATTGATTTGTTTACGGAGGAAAA
ATACAAAGCTATCGTGAAATATAAAACGGCTTACTATTCGTTTTATCTAC
CAGTGTCTTTGGGAATGCATATCGCTGGAGTCACAGATCCCAAAATGTTT
AAAGAAGCCGAATTAGTGTTAATGAAGCTGGGTGAGTATTTCCAAATCCA
GGATGATTTCATTGATTGTTATGGTGACCCTGCAGTGACTGGTAAAATTG
GTCGAGATATTGAAGATGCTAAATGTTCATGGCTTATCATTCAAGCACTG
AAAATCGCCACAATTGAACAACGAGAGATCTTGAAACAAAATTATGGGAA
AGACGACGCTGAATGCGTGAGATTTGTCAAAGACTTGTATAAAGAATTAA
ATTTAGAGAAAGTCTACTCCGAATACGAGGAGGAAAGTTATAAATCAATT
TGTCAAATGATTCAATCACATGAAAATGGTTTCCCGAAGGAACTCTTCTT
ATTTCTTgtaatgaaaatctacaaacGCCAAAAGTAGACTTAGCAGgatt
ttgttttatgttttagaGAGTTTTCTTATTAGCAACTATATCACATTTTA
AGAGTATTTTTTTCCGACTGAAAgcaattttttggatttatgtatttgaa
tatttataataagaaataattcatatttttcattttattttctagttttg
gtttttaaaaatacaaatagtagataatttttataaaactaCACCGCCGA
GAAAAGGCATCATTTAAATCTGCCTGCTTCCGTATTCTGAAATATTTAAa
gtaatcattgtttactttaCTGATAAACtgctcgaaaattgaaaaaaaaa
ctatttctgggatttcttttgaaatcctTCTGTTTTGTGCGATAAAAGTT
GTAGGTATCACCCTCAGATGATAGCGGACAGTCTTTAAGATTAAGCACta
gtattttttatttctttctaatttttaaaacataattttgttttgttttt
ctgtttgtGAAATAATGATGAATATATATAATATGATTTGCTCTGTCAAA
TTACTGTGAA

Coding sequence (CDS) from alignment at scaffold_104:274456..276265

>TCONS_00045971 ID=TCONS_00045971|Name=TCONS_00045971|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_104:274456..276265 (Clytia hemisphaerica)
ATGGCACAATCTATGAGTGATTTGAAGCAAAAGATCGAAACCTATCGTCA
ACAGTTCGATGATTCATTTAATGAGATTGTCAACGAGCTGGTTAGCGAAG
ATGAAGCATTACCTGAGTTAAAACAGGCTGCCGGATGTCTTCGCAAAGCG
CTCGAATATAACACCTTTGATGGGAAGAAATCGCGTGGTTTAATGGTCAT
CTGCACAGTGGATTTCTTACGAAAAGGAAGCCCATCTGAGAATGAAGTTA
AGAAAGCTATTTGTTTGGGTTGGTGTATTGAAATTCTTCAAGCTGTTTTC
TTGATCGCCGATGACGTCATGGATCGCTCGGAATTGAGACGCGGCCGCCC
TTGTTGGTACAAGAAAGTGGGTTTAGTTTCAATTAATGATACGTATCTTA
TGGAGCAGTGTATTTATAAACTTATAGGTGAACATTTTAAGGACCAGCCG
TATTTGTTTGAGCTCTACAAAGCTTTTCATAGAATCACTTATTTAACGGC
AATGGGTCAAGAGCTGGATATGTTAGCCTCTGAACCGATCGATCAAGAAT
TCAGTATTGATTTGTTTACGGAGGAAAAATACAAAGCTATCGTGAAATAT
AAAACGGCTTACTATTCGTTTTATCTACCAGTGTCTTTGGGAATGCATAT
CGCTGGAGTCACAGATCCCAAAATGTTTAAAGAAGCCGAATTAGTGTTAA
TGAAGCTGGGTGAGTATTTCCAAATCCAGGATGATTTCATTGATTGTTAT
GGTGACCCTGCAGTGACTGGTAAAATTGGTCGAGATATTGAAGATGCTAA
ATGTTCATGGCTTATCATTCAAGCACTGAAAATCGCCACAATTGAACAAC
GAGAGATCTTGAAACAAAATTATGGGAAAGACGACGCTGAATGCGTGAGA
TTTGTCAAAGACTTGTATAAAGAATTAAATTTAGAGAAAGTCTACTCCGA
ATACGAGGAGGAAAGTTATAAATCAATTTGTCAAATGATTCAATCACATG
AAAATGGTTTCCCGAAGGAACTCTTCTTATTTCTTgtaatgaaaatctac
aaacGCCAAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029384XLOC_029384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045971-proteinTCONS_00045971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045971-exon-scaffold_104-1491911889:274456..276265TCONS_00045971-exon-scaffold_104-1491911889:274456..276265Clytia hemisphaericaexon
TCONS_00045971-exon-scaffold_104-1510915933:274456..276265TCONS_00045971-exon-scaffold_104-1510915933:274456..276265Clytia hemisphaericaexon
TCONS_00045971-exon-scaffold_104-1575043694:274456..276265TCONS_00045971-exon-scaffold_104-1575043694:274456..276265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:274456..276265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.3469	48.7288	9.96089	5.22852	29.7342	24.8896	27.5212	30.8593	27.8797	36.4764	37.9643	17.6952	20.6034	13.4074	17.9812	22.6319	30.4924	26.2067	14.7934	22.5054	23.6535	23.3255	51.1716	51.9046	16.7733	23.2934	60.71	53.02	57.3815	56.1071
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom
IPR000092Polyprenyl_synt
IPR033749Polyprenyl_synt_CS
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
Blast
[Close]
BLAST of TCONS_00045971 vs. Swiss-Prot (Human)
Match: FPPS (Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 299.286 bits (765), Expect = 2.620e-94
Identity = 159/344 (46.22%), Postives = 235/344 (68.31%), Query Frame = -1 
Query:  527 RQQFDDSFNEIVNELVSEDEALPELKQAAGCLRKALEYNTFDGKKSRGLMVICTV-DFLRKGSPSENEVKKAICLGWCIEILQAVFLIADDVMDRSELRRGRPCWYKK--VGLVSINDTYLMEQCIYKLIGEHFKDQPYLFELYKAFHRITYLTAMGQELDMLASEPIDQEFSIDL--FTEEKYKAIVKYKTAYYSFYLPVSLGMHIAGVTDPKMFKEAELVLMKLGEYFQIQDDFIDCYGDPAVTGKIGRDIEDAKCSWLIIQALKIATIEQREILKQNYGKDDAECVRFVKDLYKELNLXXXXXXXXXXXXXSICQMIQSHENGFPKELFLFLVMKIYKRQK 1543
            +Q F   F++IV  L  ++   PE+  A   L++ LEYN   GK +RGL V+    + +       + +++A  +GWC+E+LQA FL+ADD+MD S  RRG+ CWY+K  VGL +IND  L+E CIY+L+  + ++QPY   L + F + +Y T +GQ LD+L +     + ++DL  FTE++YK+IVKYKTA+YSFYLP++  M++AG+   K    A+ +L+++GE+FQIQDD++D +GDP+VTGKIG DI+D KCSWL++Q L+ AT EQ +ILK+NYG+ +AE V  VK LY+EL+L  V+ +YEE+SY  I  +I+ +    P  +FL L  KIYKR+K
Sbjct:   80 KQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAP----QGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 419
The following BLAST results are available for this feature:
BLAST of TCONS_00045971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FPPS2.620e-9446.22Farnesyl pyrophosphate synthase OS=Homo sapiens GN... [more]
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