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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027574 ID=TCONS_00027574|Name=TCONS_00027574|organism=Clytia hemisphaerica|type=transcript|length=3205bpRun BLAST on NCBI protein sequence of TCONS_00027574-protein >TCONS_00027574-protein ID=TCONS_00027574-protein|Name=TCONS_00027574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp MDSLNIQDDTEESTHSIIGKPRRRPVQKQNPVEEVTIEMKAKQQDSKTNDRun BLAST on NCBI transcript from alignment at sc0000635:137377..146109+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027574 ID=TCONS_00027574|Name=TCONS_00027574|organism=Clytia hemisphaerica|type=transcript|length=8733bp|location=Sequence derived from alignment at sc0000635:137377..146109+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000635:137377..146109+ >TCONS_00027574 ID=TCONS_00027574|Name=TCONS_00027574|organism=Clytia hemisphaerica|type=CDS|length=32802bp|location=Sequence derived from alignment at sc0000635:137377..146109+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027574 vs. Swiss-Prot (Human)
Match: PTN20 (Tyrosine-protein phosphatase non-receptor type 20 OS=Homo sapiens GN=PTPN20 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.349e-43 Identity = 99/272 (36.40%), Postives = 153/272 (56.25%), Query Frame = 2
Query: 2192 FKFYTPGVVNTVLLSLDKKMAVNNINAEFMALRQIKCLDTCDVGNRASNRSKNRVKTILPYDKNRVQLAGGEESDYINASHVKLPLDGSKPSQYIITQAPLESTVCDFWRCVWEKKVEVIVMLTREEENSKIKCHKYWPSVKKTPMKLMDKFTVELLYEEFNGSYIYRQIQIHNVKMDKSLFITQACFTQWPETGVPKDAIEFLGFMKFVRNFXXXXXXXXXXXXXXXRSGIYVVLDAIWNSVEQDTKIDIAKMIQQAKEQRQLLIQTKVKF 3007
F F+ + L L++K A +I EFMAL + GN+ SNR KNR + ILPYD RV L G+ DYINAS++++ ++ + YI TQ PL ST+ DFW+ V E VI M+TRE E IKC+ YWP K P++L F V L + +I R Q+ S + Q FT+WP+ G P A F+ ++++ R + VVHCS G+GR+G+++ +D ++ ++ ++ +I ++ Q +EQR ++QTK ++
Sbjct: 135 FNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPYDSTRVPL--GKSKDYINASYIRI-VNCGEEYFYIATQGPLLSTIDDFWQMVLENNSNVIAMITREIEGGIIKCYHYWPISLKKPLEL-KHFRVFLENYQILQYFIIRMFQVVEKSTGTSHSVKQLQFTKWPDHGTPASADSFIKYIRYARKSHLTGPMVVHCSAGIGRTGVFLCVDVVFCAIVKNCSFNIMDIVAQMREQRSGMVQTKEQY 402 The following BLAST results are available for this feature:
BLAST of TCONS_00027574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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