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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027513 ID=TCONS_00027513|Name=TCONS_00027513|organism=Clytia hemisphaerica|type=transcript|length=2807bpRun BLAST on NCBI protein sequence of TCONS_00027513-protein >TCONS_00027513-protein ID=TCONS_00027513-protein|Name=TCONS_00027513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp KKCKDSMIFSLYGRSLTAFRIVRSSCYQLSRNFSKTFHQNISCSSKKQFSRun BLAST on NCBI transcript from alignment at sc0000631:22953..39371- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027513 ID=TCONS_00027513|Name=TCONS_00027513|organism=Clytia hemisphaerica|type=transcript|length=16419bp|location=Sequence derived from alignment at sc0000631:22953..39371- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000631:22953..39371- >TCONS_00027513 ID=TCONS_00027513|Name=TCONS_00027513|organism=Clytia hemisphaerica|type=CDS|length=42180bp|location=Sequence derived from alignment at sc0000631:22953..39371- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027513 vs. Swiss-Prot (Human)
Match: DDX21 (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 528.48 bits (1360), Expect = 1.086e-173 Identity = 288/545 (52.84%), Postives = 384/545 (70.46%), Query Frame = 2
Query: 332 EKIRNQQKEDGDFSNFEISKKTTKKLKANGVEYLFPVQAETFTACHKGNDVIVQARTGTGKTLAFTLPILEILRDYEDEVFEKKR-RMPMALVLAPTRELAMQIYKEFEKYKAKKISVSCFYGGAPYEQQEHEMREGIDVLVGTPGRIMDYLHKGKLNFSNLKHACLDEADRMMDMGFQESLDEILSSAYTNDNK--PQTLLFSATVPPWVKDTAKKYMDKNFKTFDLIGKDINKSSTSVEHKAIKCSYYERAATIKDILQVYSGKHGKSIIFTSTKQEANELALSSVIKMDSQVLHGDIQQKQREITLQSFRDGKFNCLIATDVAARGLDIPEIDLVIQTEPPKDVDSYIHXXXXXXXXXXXXXCIIFFKPGQEWGVQAVERKAGIQFTRIGPPQQEDIIRASAHDAVRCLDDISDEVLSIFAPSAKELIEKRDGNXXXXXXXXXXYISGVTEIVQRSLLSSQPGYTTYMMKQNLELRSNSLIWSTLRRYFDESFLGSIKGMRMCADKLGCVFDVPDSSISVLEDTWQGDKFATLEKLTELPEL 1957
++I +QKE G FSNF IS++T K LK GV +LFP+QA+TF + G D+I QARTGTGKT +F +P++E L E+ ++KR R P LVLAPTRELA Q+ K+F KK+SV+CFYGG PY Q MR GID+LVGTPGRI D++ GKL+ + LKH LDE D+M+DMGF + ++EILS AY D++ PQTLLFSAT P WV + AKKYM ++ DLIGK K++ +VEH AIKC + +RAA I D+++VYSG G++IIF TK+EA EL+ +S IK D+Q LHGDI QKQREITL+ FR+G F L+AT+VAARGLDIPE+DLVIQ+ PPKDV+SYIHR+GRTGRAGR G CI F++ +E+ + VE+KAGI+F RIG P +II+AS+ DA+R LD + +S F SA++LIE++ A EALAAALA+ISG T + QRSL++S G+ T +++ ++E+ + S W L+ E +KGM KLG FDVP +S++ +++ W + L TE PEL
Sbjct: 177 QEIPVEQKE-GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHG---ELQDRKRGRAPQVLVLAPTRELANQVSKDFSDI-TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEK--GAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL 714 The following BLAST results are available for this feature:
BLAST of TCONS_00027513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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