TCONS_00027513-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027513-protein
Unique NameTCONS_00027513-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027513-protein ID=TCONS_00027513-protein|Name=TCONS_00027513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp
KKCKDSMIFSLYGRSLTAFRIVRSSCYQLSRNFSKTFHQNISCSSKKQFS
FQPDQWNPCIINTSRLYSTNFENNDIHKDKESLETLKLKLRELATSQVLK
QRARKDTVSSEKIRNQQKEDGDFSNFEISKKTTKKLKANGVEYLFPVQAE
TFTACHKGNDVIVQARTGTGKTLAFTLPILEILRDYEDEVFEKKRRMPMA
LVLAPTRELAMQIYKEFEKYKAKKISVSCFYGGAPYEQQEHEMREGIDVL
VGTPGRIMDYLHKGKLNFSNLKHACLDEADRMMDMGFQESLDEILSSAYT
NDNKPQTLLFSATVPPWVKDTAKKYMDKNFKTFDLIGKDINKSSTSVEHK
AIKCSYYERAATIKDILQVYSGKHGKSIIFTSTKQEANELALSSVIKMDS
QVLHGDIQQKQREITLQSFRDGKFNCLIATDVAARGLDIPEIDLVIQTEP
PKDVDSYIHRAGRTGRAGRNGACIIFFKPGQEWGVQAVERKAGIQFTRIG
PPQQEDIIRASAHDAVRCLDDISDEVLSIFAPSAKELIEKRDGNAEEALA
AALAYISGVTEIVQRSLLSSQPGYTTYMMKQNLELRSNSLIWSTLRRYFD
ESFLGSIKGMRMCADKLGCVFDVPDSSISVLEDTWQGDKFATLEKLTELP
ELVEGVSSQYGGGSGGNFSRGGGRGGYGGGRGGGNNWNRNQNGNRSFGNN
WSNNNNNNRNSQGGYGRKRPFENNGQSNFGGGYDKRQRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015508XLOC_015508Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027513TCONS_00027513Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR012562GUCT
IPR014014RNA_helicase_DEAD_Q_motif
IPR000504RRM_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0004386helicase activity
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 140..350
e-value: 9.1E-53
score: 191.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 152..332
score: 29.44
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 386..468
e-value: 7.8E-30
score: 115.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 365..468
e-value: 5.0E-29
score: 100.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 362..508
score: 21.384
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 146..320
e-value: 4.2E-48
score: 163.3
IPR012562GUCTPFAMPF08152GUCTcoord: 558..652
e-value: 2.2E-25
score: 88.7
NoneNo IPR availableGENE3D3.40.50.300coord: 82..351
e-value: 2.8E-58
score: 196.5
NoneNo IPR availableGENE3D3.40.50.300coord: 352..502
e-value: 3.0E-40
score: 137.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 657..739
NoneNo IPR availableCDDcd00268DEADccoord: 123..328
e-value: 2.63639E-71
score: 231.99
NoneNo IPR availableCDDcd12937GUCT_RH7_likecoord: 565..650
e-value: 8.2358E-32
score: 118.438
NoneNo IPR availableCDDcd00079HELICccoord: 347..476
e-value: 1.86261E-35
score: 130.05
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 121..149
score: 6.795
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 562..643
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 199..484

Blast
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BLAST of TCONS_00027513-protein vs. Swiss-Prot (Human)
Match: DDX21 (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 313/616 (50.81%), Postives = 412/616 (66.88%), Query Frame = 0 
Query:  111 EKIRNQQKEDGDFSNFEISKKTTKKLKANGVEYLFPVQAETFTACHKGNDVIVQARTGTGKTLAFTLPILEILRDYEDEVFEKKR-RMPMALVLAPTRELAMQIYKEFEKYKAKKISVSCFYGGAPYEQQEHEMREGIDVLVGTPGRIMDYLHKGKLNFSNLKHACLDEADRMMDMGFQESLDEILSSAYTNDNK--PQTLLFSATVPPWVKDTAKKYMDKNFKTFDLIGKDINKSSTSVEHKAIKCSYYERAATIKDILQVYSGKHGKSIIFTSTKQEANELALSSVIKMDSQVLHGDIQQKQREITLQSFRDGKFNCLIATDVAARGLDIPEIDLVIQTEPPKDVDSYIHRAGRTGRAGRNGACIIFFKPGQEWGVQAVERKAGIQFTRIGPPQQEDIIRASAHDAVRCLDDISDEVLSIFAPSAKELIEKRDGNAEEALAAALAYISGVTEIVQRSLLSSQPGYTTYMMKQNLELRSNSLIWSTLRRYFDESFLGSIKGMRMCADKLGCVFDVPDSSISVLEDTWQGDKFATLEKLTELPELVEGVSSQYGGGSGGNFSRGGGRGGYGGGR--GGGNNWNRNQNGNRSFGNNWSNNNNNNRNSQGGYGRKRPF 721
            ++I  +QKE G FSNF IS++T K LK  GV +LFP+QA+TF   + G D+I QARTGTGKT +F +P++E L     E+ ++KR R P  LVLAPTRELA Q+ K+F     KK+SV+CFYGG PY  Q   MR GID+LVGTPGRI D++  GKL+ + LKH  LDE D+M+DMGF + ++EILS AY  D++  PQTLLFSAT P WV + AKKYM   ++  DLIGK   K++ +VEH AIKC + +RAA I D+++VYSG  G++IIF  TK+EA EL+ +S IK D+Q LHGDI QKQREITL+ FR+G F  L+AT+VAARGLDIPE+DLVIQ+ PPKDV+SYIHR+GRTGRAGR G CI F++  +E+ +  VE+KAGI+F RIG P   +II+AS+ DA+R LD +    +S F  SA++LIE++   A EALAAALA+ISG T + QRSL++S  G+ T +++ ++E+ + S  W  L+    E     +KGM     KLG  FDVP +S++ +++ W   +   L   TE PEL EG    YGG  G      G RG   G R   G    +R   G RS G N SN + N        G+KR F
Sbjct:  177 QEIPVEQKE-GAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHG---ELQDRKRGRAPQVLVLAPTRELANQVSKDFSDI-TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEK--GAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-EGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQNK-------GQKRSF 777
The following BLAST results are available for this feature:
BLAST of TCONS_00027513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX210.000e+050.81Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
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