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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027511 ID=TCONS_00027511|Name=TCONS_00027511|organism=Clytia hemisphaerica|type=transcript|length=1260bp
ctgtttttctattttctaattACATTagccttcaggtaggtccatttagc
ATGTATCTTTGTGTGAATAAATAAATTGTGATTCAGAttgcaaattaaaa
attttaaaataattattaTAAAAAGTATTATGGATTTGACAGTGCATTTA
GACAAAGGGAGATTGAAATCTGTACAGGTTCAACGACCAAAACTATCATC
TATTGATGATGTAATTATTGAAGTAACTCATGCAGGAGTTTGCGggactg
atttgaaaataatcgaTGGGAAATTTCCTGCGGCTGAAACTGTGATAATG
GGTCATGAAATCACAGGTTTGATTGCAGAGAAAGGTGAAAATGTGACTCA
TCTCAGCATTGGAGACagGGTATGTGTCAACCCATTCAACTTTTGCTCAA
CTTGTTTATACTGTGTTCGTGGAGATACACAATTTTGTGTACGGGAAGGG
ATGAAAACTGCATTTGGAATCATGAAAGATGGTGGCTGGCAAAAATATGT
TGTTGTTCCCGGCTCCCTTTGTTTTCAACTACCACAAGGAATGTCACTAC
AGGACTCTGTCTTTTGTCAACCTTTATCAAATTGTATACGAGGCTGGGAT
AACATGGTTCATGTTGATTTGGATGCACGGATTCTTGTTGCTGGTGCAGG
CATTGTTGGGTTATTATGGGCATCGCTGTTTCATTTCCATGGATATCGTG
ACGTCACAATAACAGAAGTGATTGATCATCGGAAACTAATGGCATCACGC
CTTGATCTTGGTTTTCCAGCATTGAAGCCAGGAGATGTAAACCGAGAAAT
GAGGGAAGCTGAAGAACATGGCAATGAAGCATGgggttttgatttgattg
ttgattgtACAGGTCAAAAAGAGGCTATTGAGACCCAATTCAAATGGTTA
CGTAAAGGAGCGACATTTTTGTTGTATGGAGTATGTGCGCAGGGTGTTAA
TCTAGATCTTGAAGTTTATCaaatctataaaaaagaaatcactaTTGTTA
GTTCCTACTTGAACAGGTTTTCATATGCACGGACATTAAAATTGGTTCAT
GGAATGTCAAAGCGGTatttagattttaagaaattggatgttggtgtttt
taaattgaaagaCTATGAAGAAGCTCTGGAAAAATTACAGAATGGTGAAT
TctcaaaattagtttttgaaGTCTGAATGGTTTCCaattttaatttcata
aaaTCTGTTGTGCTGATATGATATCTTTTGCGTCTTAAAAGAAATAAAGC
TGCAATTTAT Run BLAST on NCBI transcript from alignment at sc0000631:3439..5350- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027511 ID=TCONS_00027511|Name=TCONS_00027511|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at sc0000631:3439..5350- (Clytia hemisphaerica)
CTGTTTTTCTATTTTCTAATTACATTAGCCTTCAGGTAGGTCCATTTAGC
ATGTATCTTTGTGTGAATAAATAAATTGTGATTCAGATTGCAAATTAAAA
ATTTTAAAATAATTATTATAAAAAGTATTATGGATTTGACAGTGCATTTA
GACAAAGGGAGATTGAAATCTGTACAGGTTCAACGACCAAAACTATCATC
TATTGATGATGTAATTATTGAAGTAACTCATGCAGGAGTTTGCGGGACTG
ATTTGAAAATAATCGATGGGAAATTTCCTGCGGCTGAAACTGTGATAATG
GGTCATGAAATCACAGGTTTGATTGCAGAGAAAGGTGAAAATGTGACTCA
TCTCAGCATTGGAGACAGGTATATTTTTCAAATGATTTTTAGCACTTCTT
TTTTTTAAAGTCTGTGTCAAAAAGGTGTGCAGTGTTTTTATTTTATAACT
TCCCAAGCATTTGTTGTATATTAAAAAGGTTGACACAGGCTTTAGTAACA
GTTACTGGATATAAAGTTTTTTTTAGGAATTTTTCCACTATTATACTGTA
GTGGTAGAAACTCAATTTGAATTTATTTGGTGAAGCTCAATTTTGATTTG
TGCAAAAAGTCTGAAAATACCAATAAAAGCAGCACTTTTATTTATTAGGG
TATGTGTCAACCCATTCAACTTTTGCTCAACTTGTTTATACTGTGTTCGT
GGAGATACACAATTTTGTGTACGGGAAGGGATGAAAACTGCATTTGGAAT
CATGAAAGATGGTGGCTGGCAAAAATATGTTGTTGTTCCCGGCTCCCTTT
GTTTTCAACTACCACAAGGAATGTCACTACAGGACTCTGTCTTTTGTCAA
CCTTTATCAAATTGTATACGAGGCTGGGATAACATGGTTCATGTTGATTT
GGATGCACGGATTCTTGTTGCTGGTGCAGGTGAATATTTTCAACTCTCAC
TCTTGTAATATTTATTGCAAAACATGATCAGCATTCTTCTATTGGAAAAA
AATGTTTTTTCAGGGGTATATACAAGCGTTTTTAGCTAATTGAAATGCAT
ATTTTGAAAATGTTTCAGGCATTGTTGGGTTATTATGGGCATCGCTGTTT
CATTTCCATGGATATCGTGACGTCACAATAACAGAAGTGATTGATCATCG
GAAACTAATGGCATCACGCCTTGATCTTGGTTTTCCAGCATTGAAGCCAG
GAGATGTAAACCGAGAAATGAGGGAAGCTGAAGAACATGGCAATGAAGCA
TGGGGTTTTGATTTGATTGTTGATTGTACAGGTTTGAACCTTAAAATTAG
GAAGCTGTTAAAAAGGATAGTCAGATGATTTGATATATTTTGCCTGTAGA
ATCTTCTATGGTTCTGAATGAAACCTCCAAATGTTTTGACTAACATTTTC
CCAGTCAAATGAAAGTTTGAAATATCTTTACATTGGTTTTTTACATTTTT
TCTATTGTTTTCTTGCTCAAAGTTTAAGACTTGTAACCTACATTCTTTAA
TATTTATTCTCCAGGTCAAAAAGAGGCTATTGAGACCCAATTCAAATGGT
TACGTAAAGGAGCGACATTTTTGTTGTATGGAGTATGTGCGCAGGGTGTT
AATCTAGATCTTGAAGTTTATCAAATCTATAAAAAAGAAATCACTATTGT
TAGTTCCTACTTGAACAGGTTTTCATATGCACGGACATTAAAATTGGTTC
ATGGAATGTCAAAGCGGTATTTAGATTTTAAGAAATTGGATGTTGGTGTT
TTTAAATTGAAAGACTATGAAGAAGCTCTGGAAAAATTACAGAATGGTGA
ATTCTCAAAATTAGTTTTTGAAGTCTGAATGGTTTCCAATTTTAATTTCA
TAAAATCTGTTGTGCTGATATGATATCTTTTGCGTCTTAAAAGAAATAAA
GCTGCAATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027511-exon-sc0000631-1575043694:4983..5350 | TCONS_00027511-exon-sc0000631-1575043694:4983..5350 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1575043694:4422..4702 | TCONS_00027511-exon-sc0000631-1575043694:4422..4702 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1575043694:4070..4282 | TCONS_00027511-exon-sc0000631-1575043694:4070..4282 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1575043694:3439..3836 | TCONS_00027511-exon-sc0000631-1575043694:3439..3836 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1510915933:4983..5350 | TCONS_00027511-exon-sc0000631-1510915933:4983..5350 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1510915933:4422..4702 | TCONS_00027511-exon-sc0000631-1510915933:4422..4702 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1510915933:4070..4282 | TCONS_00027511-exon-sc0000631-1510915933:4070..4282 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1510915933:3439..3836 | TCONS_00027511-exon-sc0000631-1510915933:3439..3836 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1491911889:4983..5350 | TCONS_00027511-exon-sc0000631-1491911889:4983..5350 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1491911889:4422..4702 | TCONS_00027511-exon-sc0000631-1491911889:4422..4702 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1491911889:4070..4282 | TCONS_00027511-exon-sc0000631-1491911889:4070..4282 | Clytia hemisphaerica | exon |
| TCONS_00027511-exon-sc0000631-1491911889:3439..3836 | TCONS_00027511-exon-sc0000631-1491911889:3439..3836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000631 | supercontig | sc0000631:3439..5350 - |
Blast
BLAST of TCONS_00027511 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4) HSP 1 Score: 96.6709 bits (239), Expect = 3.840e-22 Identity = 81/355 (22.82%), Postives = 155/355 (43.66%), Query Frame = 1
Query: 160 RLKSVQVQRPKLSSIDDVIIEVTHAGVCGTDLKIID----GKFPAAETVIMGHEITGLIAEKGENVTHLSIGDRVCVNPF------NFCSTCLYCVRGDTQFCVREGMKTAFGIMKDGGWQKYVVVPGSLCFQLPQGMSLQDSVFCQPLS----NCIRGWDNMVHVDLDARILVAGAGIVGLLWASLFHFHGYRDVTITEVIDHR----KLMASRLDLGFPALKPGDVNREMREAEEHGNEAWGFDLIVDCTGQKEAIETQFKWLRKGATFLLYGVCAQGVNLDLEVYQIYKKEITIVSSYLNRFSYARTLKLVHGMSKRYLDFKKLDVGVFKLKDYEEALEKLQNGEFSKLVFE 1170
RL++ + P ++V++ + G+CG+D+ + G F + +++GHE +G + + G +V HL GDRV + P FC Y + FC DG ++ + C++LP ++ ++ +PLS C RG V L ++LV GAG +G++ + G V +T++ R K + + L L P ++ R++ G ++ ++CTG + +I+ R G +L G+ ++ + L I + +I V Y N + A ++ ++ + ++ K L F L+ EA E + G K++ +
Sbjct: 21 RLENYPIPEP---GPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP--------PDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGG-----VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE-----GQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISM-----LASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLK 349
The following BLAST results are available for this feature:
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