TCONS_00035578-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035578-protein
Unique NameTCONS_00035578-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035578-protein ID=TCONS_00035578-protein|Name=TCONS_00035578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
DTTPTVTLTGENGQRFEALFDTGASRTTIPQAEADRLGIDYKSNKNCVEL
VTASGSRIKTLGKGTLRFALDSVNGTTKIVEGEVYVLQDSINKALIGRNF
YMKYNICTGGLDGQWFVSTVESLSDHMNLKKRETDWKRDQYTDHEWVCEV
SLEVECPTPKTVAQKNHPRKSEFFSKEWIQKWENIFEQFTEGADIPPVHL
KLNDPNILPPNQRPYQISQDKLVSLKTMLKKMVNEKQIKTSQSQRASPIV
MVEKPDRKDENGDQLYRLTTNFKELNKCIKDEIHPIPKIRQVLDKLLGKK
VFTVIDLKDGFHQLKLDEESQELCALITPIGVYQYLRMPMGIKVAPSIFQ
REIAKILEETPGELYIDDIILGADSIESLYEQTNEVLETLANRKIVITPS
KCHFGMTKVKYLGYQITPNGVRIDPQTIDNIEDKIFKTITAVLKDENKSV
KDLVKSTVGIVQYYSQFCPMMADKLVQLTDKLRKNGDGMFRNEDLAKIRE
IIYEFRASGAIAPADPSLPTIVATDASNRAIGFIATQDQDGEPKIIDMAS
AKINNGLAKRLTSYQIDETKLDSAFSRELFAIDFAMTRLQDRVRLSKVTV
LTDHKAITDILKRNWGQWMVGKDGTIMERIRISNVTVEWIPRKDNIIANA
LAKWRKPDDQYTQRDRLADLKPQVTRYHLPKDRQYIEDCQAYLETKKQAE
DALKLKLGDKVRRTTAAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020830XLOC_020830Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035578TCONS_00035578Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR021109Peptidase_aspartic_dom
IPR000477RT_dom
IPR001969Aspartic_peptidase_AS
IPR001995Peptidase_A2_cat
IPR034122Retropepsin-like_bacterial
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 373..393
NoneNo IPR availableGENE3D3.10.10.10coord: 197..340
e-value: 6.3E-32
score: 109.8
NoneNo IPR availablePFAMPF13975gag-asp_proteascoord: 12..100
e-value: 2.4E-10
score: 40.7
NoneNo IPR availableGENE3D3.30.70.270coord: 431..548
e-value: 5.9E-16
score: 58.0
NoneNo IPR availableGENE3D3.30.70.270coord: 341..425
e-value: 8.3E-24
score: 83.2
NoneNo IPR availableCDDcd01647RT_LTRcoord: 236..414
e-value: 8.77956E-55
score: 185.492
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 181..615
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 549..665
e-value: 7.5E-4
score: 18.4
IPR021109Aspartic peptidase domainGENE3D2.40.70.10coord: 1..107
e-value: 3.4E-12
score: 46.1
IPR021109Aspartic peptidase domainSUPERFAMILY50630Acid proteasescoord: 12..105
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 266..416
e-value: 3.0E-22
score: 79.1
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 233..416
score: 15.374
IPR001969Aspartic peptidase, active sitePROSITEPS00141ASP_PROTEASEcoord: 18..29
IPR001995Peptidase A2A, retrovirus, catalyticPROSITEPS50175ASP_PROT_RETROVcoord: 16..100
score: 10.953
IPR034122Retropepsin-like domain, bacterialCDDcd05483retropepsin_like_bacteriacoord: 12..100
e-value: 2.10668E-8
score: 51.4761

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035578-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top