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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035578 ID=TCONS_00035578|Name=TCONS_00035578|organism=Clytia hemisphaerica|type=transcript|length=2158bp
CGAGTGGCTGCTGTTGTACGTCTGACTTTATCTCCCAATTTCAACTTGAG
AGCGTCTTCCGCTTGTTTCTTGGTTTCCAAGTAAGCTTGGCAATCTTCAA
TGTACTGTCTGTCTTTTGGAAGATGATATCTTGTTACTTGGGGTTTCAGG
TCTGCAAGTCGGTCACGTTGCGTGTATTGATCGTCTGGTTTTCTCCACTT
GGCCAGAGCGTTTGCAATAATGTTGTCTTTCCGTGGGATCCACTCCACGG
TTACGTTGCTTATCCTGATTCTTTCCATGATGGTCCCATCTTTCCCGACC
ATCCATTGTCCCCAATTACGTTTCAAGATGTCTGTGATTGCTTTGTGATC
AGTCAACACTGTCACTTTGCTCAATCTTACTCTGTCTTGAAGTCTTGTCA
TTGCGAAGTCGATGGCGAATAGCTCCCGACTGAAGGCGCTATCCAACTTC
GTTTCATCAATCTGGTATGATGTTAGTCTTTTAGCGAGTCCGTTGTTGAT
CTTGGCGGAGGCCATATCGATGATTTTGGGCTCTCCATCCTGGTCTTGGG
TGGCGATGAATCCAATAGCACGGTTACTGGCGTCCGTGGCTACGATGGTT
GGAAGACTTGGGTCCGCTGGAGCGATGGCTCCAGACGCTCTGAACTCATA
AATGATTTCTCTAATCTTAGCTAAGTCTTCATTTCTAAACATGCCATCTC
CATTTTTGCGTAGTTTGTCAGTCAGTTGTACCAGTTTGTCTGCCATCATG
GGGCAGAACTGGGAGTAGTATTGTACAATCCCTACTGTTGATTTGACCAA
GTCTTTTACTGACTTGTTCTCGTCTTTTAACACAGCGGTGATAGTCTTGA
AGATTTTATCTTCGATGTTGTCAATTGTTTGGGGGTCAATGCGGACTCCG
TTCGGCGTAATTTGGTAACCAAGGTATTTGACCTTGGTCATTCCGAAGTG
GCACTTCGATGGAGTGATGACGATTTTTCTATTTGCCAGTGTCTCCAATA
CTTCATTGGTCTGTTCATACAGTGATTCGATGGAGTCGGCGCCGAGGATG
ATATCGTCGATGTATAGTTCTCCAGGTGTTTCTTCGAGAATTTTAGCTAT
TTCTCTTTGGAAAATGCTGGGCGCTACCTTTATCCCCATGGGCATTCTGA
GGTATTGGTAGACTCCGATTGGTGTGATGAGTGCGCACAGCTCCTGAGAT
TCCTCGTCCAATTTTAGCTGGTGAAATCCATCTTTCAGGTCGATTACTGT
GAACACTTTCTTTCCGAGCAATTTGTCCAATACTTGTCGGATTTTCGGAA
TTGGGTGTATTTCATCCTTGATACACTTGTTCAACTCCTTAAAGTTGGTC
GTCAAACGATAAAGTTGGTCACCGTTTTCATCTTTGCGGTCAGGTTTTTC
TACCATGACGATGGGGCTTGCTCGTTGAGATTGGGATGTTTTGATCTGTT
TTTCGTTGACCATTTTCTTCAGCATAGTCTTCAGACTTACGAGTTTGTCT
TGGGATATTTGGTAAGGTCGTTGGTTTGGTGGGAGTATATTGGGATCATT
GAGTTTCAGGTGTACTGGTGGGATGTCAGCTCCTTCTGTGAATTGCTCGA
AGATATTTTCCCATTTCTGGATCCATTCTTTCGAGAAGAACTCACTCTTT
CTTGGATGATTCTTCTGTGCTACTGTCTTGGGTGTAGGGCATTCTACTTC
CAGTGATACTTCACATACCCATTCATGGTCAGTATACTGGTCTCGTTTCC
AATCTGTTTCTCGTTTCTTTAGGTTCATGTGGTCGCTCAATGATTCGACT
GTTGAGACAAACCATTGGCCGTCAAGACCTCCGGTGCAGATGTTGTATTT
CATGTAGAAATTTCTGCCAATGAGTGCCTTGTTGATTGAGTCTTGAAGTA
CGTAAACTTCTCCTTCCACTATCTTTGTTGTTCCGTTTACTGAGTCCAGG
GCGAATCTGAGAGTTCCTTTCCCTAGAGTCTTGATTCTTGAGCCGCTTGC
GGTGACGAGCTCAACGCAGTTCTTATTGGATTTGTAGTCTATCCCCAAAC
GGTCAGCCTCCGCTTGTGGGATCGTTGTACGTGACGCGCCTGTATCAAAC
AGAGCTTCAAATCGTTGTCCGTTTTCTCCGGTCAGTGTGACTGTTGGTGT
TGTGTCTG Run BLAST on NCBI protein sequence of TCONS_00035578-protein >TCONS_00035578-protein ID=TCONS_00035578-protein|Name=TCONS_00035578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
DTTPTVTLTGENGQRFEALFDTGASRTTIPQAEADRLGIDYKSNKNCVEL
VTASGSRIKTLGKGTLRFALDSVNGTTKIVEGEVYVLQDSINKALIGRNF
YMKYNICTGGLDGQWFVSTVESLSDHMNLKKRETDWKRDQYTDHEWVCEV
SLEVECPTPKTVAQKNHPRKSEFFSKEWIQKWENIFEQFTEGADIPPVHL
KLNDPNILPPNQRPYQISQDKLVSLKTMLKKMVNEKQIKTSQSQRASPIV
MVEKPDRKDENGDQLYRLTTNFKELNKCIKDEIHPIPKIRQVLDKLLGKK
VFTVIDLKDGFHQLKLDEESQELCALITPIGVYQYLRMPMGIKVAPSIFQ
REIAKILEETPGELYIDDIILGADSIESLYEQTNEVLETLANRKIVITPS
KCHFGMTKVKYLGYQITPNGVRIDPQTIDNIEDKIFKTITAVLKDENKSV
KDLVKSTVGIVQYYSQFCPMMADKLVQLTDKLRKNGDGMFRNEDLAKIRE
IIYEFRASGAIAPADPSLPTIVATDASNRAIGFIATQDQDGEPKIIDMAS
AKINNGLAKRLTSYQIDETKLDSAFSRELFAIDFAMTRLQDRVRLSKVTV
LTDHKAITDILKRNWGQWMVGKDGTIMERIRISNVTVEWIPRKDNIIANA
LAKWRKPDDQYTQRDRLADLKPQVTRYHLPKDRQYIEDCQAYLETKKQAE
DALKLKLGDKVRRTTAAT Run BLAST on NCBI transcript from alignment at sc0001334:60139..62296 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035578 ID=TCONS_00035578|Name=TCONS_00035578|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at sc0001334:60139..62296 (Clytia hemisphaerica)
CAGACACAACACCAACAGTCACACTGACCGGAGAAAACGGACAACGATTT
GAAGCTCTGTTTGATACAGGCGCGTCACGTACAACGATCCCACAAGCGGA
GGCTGACCGTTTGGGGATAGACTACAAATCCAATAAGAACTGCGTTGAGC
TCGTCACCGCAAGCGGCTCAAGAATCAAGACTCTAGGGAAAGGAACTCTC
AGATTCGCCCTGGACTCAGTAAACGGAACAACAAAGATAGTGGAAGGAGA
AGTTTACGTACTTCAAGACTCAATCAACAAGGCACTCATTGGCAGAAATT
TCTACATGAAATACAACATCTGCACCGGAGGTCTTGACGGCCAATGGTTT
GTCTCAACAGTCGAATCATTGAGCGACCACATGAACCTAAAGAAACGAGA
AACAGATTGGAAACGAGACCAGTATACTGACCATGAATGGGTATGTGAAG
TATCACTGGAAGTAGAATGCCCTACACCCAAGACAGTAGCACAGAAGAAT
CATCCAAGAAAGAGTGAGTTCTTCTCGAAAGAATGGATCCAGAAATGGGA
AAATATCTTCGAGCAATTCACAGAAGGAGCTGACATCCCACCAGTACACC
TGAAACTCAATGATCCCAATATACTCCCACCAAACCAACGACCTTACCAA
ATATCCCAAGACAAACTCGTAAGTCTGAAGACTATGCTGAAGAAAATGGT
CAACGAAAAACAGATCAAAACATCCCAATCTCAACGAGCAAGCCCCATCG
TCATGGTAGAAAAACCTGACCGCAAAGATGAAAACGGTGACCAACTTTAT
CGTTTGACGACCAACTTTAAGGAGTTGAACAAGTGTATCAAGGATGAAAT
ACACCCAATTCCGAAAATCCGACAAGTATTGGACAAATTGCTCGGAAAGA
AAGTGTTCACAGTAATCGACCTGAAAGATGGATTTCACCAGCTAAAATTG
GACGAGGAATCTCAGGAGCTGTGCGCACTCATCACACCAATCGGAGTCTA
CCAATACCTCAGAATGCCCATGGGGATAAAGGTAGCGCCCAGCATTTTCC
AAAGAGAAATAGCTAAAATTCTCGAAGAAACACCTGGAGAACTATACATC
GACGATATCATCCTCGGCGCCGACTCCATCGAATCACTGTATGAACAGAC
CAATGAAGTATTGGAGACACTGGCAAATAGAAAAATCGTCATCACTCCAT
CGAAGTGCCACTTCGGAATGACCAAGGTCAAATACCTTGGTTACCAAATT
ACGCCGAACGGAGTCCGCATTGACCCCCAAACAATTGACAACATCGAAGA
TAAAATCTTCAAGACTATCACCGCTGTGTTAAAAGACGAGAACAAGTCAG
TAAAAGACTTGGTCAAATCAACAGTAGGGATTGTACAATACTACTCCCAG
TTCTGCCCCATGATGGCAGACAAACTGGTACAACTGACTGACAAACTACG
CAAAAATGGAGATGGCATGTTTAGAAATGAAGACTTAGCTAAGATTAGAG
AAATCATTTATGAGTTCAGAGCGTCTGGAGCCATCGCTCCAGCGGACCCA
AGTCTTCCAACCATCGTAGCCACGGACGCCAGTAACCGTGCTATTGGATT
CATCGCCACCCAAGACCAGGATGGAGAGCCCAAAATCATCGATATGGCCT
CCGCCAAGATCAACAACGGACTCGCTAAAAGACTAACATCATACCAGATT
GATGAAACGAAGTTGGATAGCGCCTTCAGTCGGGAGCTATTCGCCATCGA
CTTCGCAATGACAAGACTTCAAGACAGAGTAAGATTGAGCAAAGTGACAG
TGTTGACTGATCACAAAGCAATCACAGACATCTTGAAACGTAATTGGGGA
CAATGGATGGTCGGGAAAGATGGGACCATCATGGAAAGAATCAGGATAAG
CAACGTAACCGTGGAGTGGATCCCACGGAAAGACAACATTATTGCAAACG
CTCTGGCCAAGTGGAGAAAACCAGACGATCAATACACGCAACGTGACCGA
CTTGCAGACCTGAAACCCCAAGTAACAAGATATCATCTTCCAAAAGACAG
ACAGTACATTGAAGATTGCCAAGCTTACTTGGAAACCAAGAAACAAGCGG
AAGACGCTCTCAAGTTGAAATTGGGAGATAAAGTCAGACGTACAACAGCA
GCCACTCG Coding sequence (CDS) from alignment at sc0001334:60139..62296 >TCONS_00035578 ID=TCONS_00035578|Name=TCONS_00035578|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at sc0001334:60139..62296 (Clytia hemisphaerica)
GACACAACACCAACAGTCACACTGACCGGAGAAAACGGACAACGATTTGA
AGCTCTGTTTGATACAGGCGCGTCACGTACAACGATCCCACAAGCGGAGG
CTGACCGTTTGGGGATAGACTACAAATCCAATAAGAACTGCGTTGAGCTC
GTCACCGCAAGCGGCTCAAGAATCAAGACTCTAGGGAAAGGAACTCTCAG
ATTCGCCCTGGACTCAGTAAACGGAACAACAAAGATAGTGGAAGGAGAAG
TTTACGTACTTCAAGACTCAATCAACAAGGCACTCATTGGCAGAAATTTC
TACATGAAATACAACATCTGCACCGGAGGTCTTGACGGCCAATGGTTTGT
CTCAACAGTCGAATCATTGAGCGACCACATGAACCTAAAGAAACGAGAAA
CAGATTGGAAACGAGACCAGTATACTGACCATGAATGGGTATGTGAAGTA
TCACTGGAAGTAGAATGCCCTACACCCAAGACAGTAGCACAGAAGAATCA
TCCAAGAAAGAGTGAGTTCTTCTCGAAAGAATGGATCCAGAAATGGGAAA
ATATCTTCGAGCAATTCACAGAAGGAGCTGACATCCCACCAGTACACCTG
AAACTCAATGATCCCAATATACTCCCACCAAACCAACGACCTTACCAAAT
ATCCCAAGACAAACTCGTAAGTCTGAAGACTATGCTGAAGAAAATGGTCA
ACGAAAAACAGATCAAAACATCCCAATCTCAACGAGCAAGCCCCATCGTC
ATGGTAGAAAAACCTGACCGCAAAGATGAAAACGGTGACCAACTTTATCG
TTTGACGACCAACTTTAAGGAGTTGAACAAGTGTATCAAGGATGAAATAC
ACCCAATTCCGAAAATCCGACAAGTATTGGACAAATTGCTCGGAAAGAAA
GTGTTCACAGTAATCGACCTGAAAGATGGATTTCACCAGCTAAAATTGGA
CGAGGAATCTCAGGAGCTGTGCGCACTCATCACACCAATCGGAGTCTACC
AATACCTCAGAATGCCCATGGGGATAAAGGTAGCGCCCAGCATTTTCCAA
AGAGAAATAGCTAAAATTCTCGAAGAAACACCTGGAGAACTATACATCGA
CGATATCATCCTCGGCGCCGACTCCATCGAATCACTGTATGAACAGACCA
ATGAAGTATTGGAGACACTGGCAAATAGAAAAATCGTCATCACTCCATCG
AAGTGCCACTTCGGAATGACCAAGGTCAAATACCTTGGTTACCAAATTAC
GCCGAACGGAGTCCGCATTGACCCCCAAACAATTGACAACATCGAAGATA
AAATCTTCAAGACTATCACCGCTGTGTTAAAAGACGAGAACAAGTCAGTA
AAAGACTTGGTCAAATCAACAGTAGGGATTGTACAATACTACTCCCAGTT
CTGCCCCATGATGGCAGACAAACTGGTACAACTGACTGACAAACTACGCA
AAAATGGAGATGGCATGTTTAGAAATGAAGACTTAGCTAAGATTAGAGAA
ATCATTTATGAGTTCAGAGCGTCTGGAGCCATCGCTCCAGCGGACCCAAG
TCTTCCAACCATCGTAGCCACGGACGCCAGTAACCGTGCTATTGGATTCA
TCGCCACCCAAGACCAGGATGGAGAGCCCAAAATCATCGATATGGCCTCC
GCCAAGATCAACAACGGACTCGCTAAAAGACTAACATCATACCAGATTGA
TGAAACGAAGTTGGATAGCGCCTTCAGTCGGGAGCTATTCGCCATCGACT
TCGCAATGACAAGACTTCAAGACAGAGTAAGATTGAGCAAAGTGACAGTG
TTGACTGATCACAAAGCAATCACAGACATCTTGAAACGTAATTGGGGACA
ATGGATGGTCGGGAAAGATGGGACCATCATGGAAAGAATCAGGATAAGCA
ACGTAACCGTGGAGTGGATCCCACGGAAAGACAACATTATTGCAAACGCT
CTGGCCAAGTGGAGAAAACCAGACGATCAATACACGCAACGTGACCGACT
TGCAGACCTGAAACCCCAAGTAACAAGATATCATCTTCCAAAAGACAGAC
AGTACATTGAAGATTGCCAAGCTTACTTGGAAACCAAGAAACAAGCGGAA
GACGCTCTCAAGTTGAAATTGGGAGATAAAGTCAGACGTACAACAGCAGC
CACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035578-exon-sc0001334-1491911889:60139..62296 | TCONS_00035578-exon-sc0001334-1491911889:60139..62296 | Clytia hemisphaerica | exon |
| TCONS_00035578-exon-sc0001334-1510915933:60139..62296 | TCONS_00035578-exon-sc0001334-1510915933:60139..62296 | Clytia hemisphaerica | exon |
| TCONS_00035578-exon-sc0001334-1575043694:60139..62296 | TCONS_00035578-exon-sc0001334-1575043694:60139..62296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001334 | supercontig | sc0001334:60139..62296 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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