TCONS_00035028-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035028-protein
Unique Name	TCONS_00035028-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	474

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035028-protein ID=TCONS_00035028-protein|Name=TCONS_00035028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
SKYIMHIYAIRIFIMGKKGSGGVGGGVNHRFIEELPSNRFTYIVTIIMAS
VWFVVGTSLHVAAHIAPYIECQWNLTRFQTAISSSSVYLGESIGSIYFGG
LVDMHGRQRILLGVIVFCVYFYALAASATTFAMFVVLRFFNGAFAGAALV
ISCIYANESVKSKHRTAVFSIIGGAQSAGLFFSTFVAYFVLNRLGWRIYV
FIMSSSTLVFLPFIAWLPESLCFLQISGKQNEFKETLSRVSKIIAAPIPK
RYINVDDRPVHQQASYRFLFQRYGYVTSVCALLFAVSHMNYYSFIYMTTL
TVQNDQCYRHLTREKMVHCQELSNSELLQAVLVSASEIPGYFIVLLCADL
LGRKPTIALGLLFNTASYITTLFCLPHMVSIVTVLISRGIACGYSSIMFL
YTGELLPTIVRSTGSGICSSFAKFCCVLVPFIFQEFVYWSPLATSAMMVF
LCLLCLLVLPLLKETKGELLKAVD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020385	XLOC_020385	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035028	TCONS_00035028	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 36..234 e-value: 6.6E-26 score: 90.4
None	No IPR available	GENE3D	1.20.1250.20		coord: 254..474 e-value: 9.6E-20 score: 70.2
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 78..472 e-value: 1.1E-26 score: 93.6
IPR005829	Sugar transporter, conserved site	PROSITE	PS00216	SUGAR_TRANSPORT_1	coord: 344..360
IPR005829	Sugar transporter, conserved site	PROSITE	PS00217	SUGAR_TRANSPORT_2	coord: 140..165
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 44..466 score: 25.755
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 45..433 e-value: 1.45567E-18 score: 84.2877
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 32..467

Blast

[Close]

BLAST of TCONS_00035028-protein vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.351e-42
Identity = 121/450 (26.89%), Postives = 209/450 (46.44%), Query Frame = 0

Query:   32 IEELPSNRFTYIVTIIMASVWFVVGTSLHVAAHIAPYIECQWNLTRFQTAISSSSVYLGESIGSIYFGGLVDMHGRQRILLGVIVFCVYFYALAASATTFAMFVVLRFFNGAFAGAALVISCIYANESVKSKHRTAVFSIIGGAQSAGLFFSTFVAYFVLNRLGWRIYVFIMSSSTLVFLPFIAWLPESLCFLQISGKQNEFKETLSRVSKIIAAPIPKRYINVDDRPVHQQASYRFLFQ-RYGYVTSVCALLFAVSHMNYYSFIYMTTLTVQNDQCYRHLTREKMVH------CQELSNSELLQAVLVSASEIPGYFIVLLCADLLGRKPTIALGLLFNTASYITTLFCLPHMVSIVTVLISRGIACGYSSIMFLYTGELLPTIVRSTGSGICSSFAKFCCVLVPFIFQEFVYWSPLATSAMMVFLCLLCLLV---LPLLKETKGELLK 471
            +E +   +F + ++++    W      + + + +AP + C+W L  +Q A+ +S V++G    S  +G + D +GR+  L   +++ +Y+  L+A A  ++  +VLR   G   G       +YA E +  K R     +I    + G  F   +A FV+  LGWR  + + +   L+F     WLPES  +  +SG Q +   TL R++    AP+P   + +  +    +   R LF   + + T +   ++  +  +YY  + +TT   Q        +R+K V       C+ LS  + +  +  + SE PG  + L   D LGRK T+AL  +  +   +    C+   V  + + I+R    G     ++YT E+ PT  R+ G G CS  A+   ++ PFI Q  +  S   T A+    CLL  L    LP+  ETKG  L+
Sbjct:   74 VEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYA-EFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ--EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPI--ETKGRGLQ 518

The following BLAST results are available for this feature:

BLAST of TCONS_00035028-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035028-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SVOP	1.351e-42	26.89	Synaptic vesicle 2-related protein OS=Homo sapiens...	[more]

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TCONS_00035028-protein (polypeptide) - C. hemisphaerica