TCONS_00035028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035028
Unique NameTCONS_00035028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035028 ID=TCONS_00035028|Name=TCONS_00035028|organism=Clytia hemisphaerica|type=transcript|length=1430bp
TCAAAATACATTATGCATATCTACGCAATACGCATATTCATCATGGGCAA
GAAAGGATCAGGAGGCGTTGGCGGGGGCGTGAACCATCGTTTCATCGAAG
AACTACCATCCAATCGTTTCACGTATATCGTCACCATTATCATGGCATCG
GTTTGGTTTGTCGTCGGTACCTCCCTCCACGTTGCCGCCCATATTGCGCC
CTACATCGAGTGCCAATGGAATTTGACTCGTTTCCAGACCGCCATTAGCT
CATCTTCCGTTTACCTCGGAGAAAGTATCGGTTCCATTTATTTCGGTGGC
CTCGTTGACATGCACGGACGTCAGAGAATTCTACTCGGTGTCATCGTATT
TTGTGTATATTTTTACGCCCTTGCCGCCAGCGCTACTACTTTTGCCATGT
TTGTGGTGTTACGTTTCTTCAACGGGGCGTTTGCGGGCGCTGCCCTAGTG
ATATCCTGTATCTATGCTAACGAATCCGTCAAATCGAAACACCGAACTGC
TGTCTTCTCAATCATCGGAGGTGCGCAATCTGCTGGTTTATTTTTCTCAA
CTTTCGTGGCGTATTTCGTTTTGAACAGACTTGGATGGAGAATATACGTA
TTCATCATGAGCTCTTCCACTCTAGTTTTTTTACCTTTTATTGCTTGGCT
ACCAGAATCACTTTGCTTCTTACAGATTTCTGGAAAACAGAACGAATTTA
AGGAAACTCTATCTAGAGTATCAAAAATCATCGCAGCCCCGATTCCAAAA
CGTTACATCAACGTCGATGACAGACCAGTGCATCAACAGGCTAGTTATCG
CTTCTTATTTCAAAGGTATGGATATGTCACATCAGTCTGTGCGCTGTTAT
TTGCGGTTTCACATATGAATTATTATAGTTTCATCTACATGACCACCTTA
ACCGTACAAAACGATCAATGCTACCGACATTTAACACGTGAAAAAATGGT
GCATTGTCAGGAATTAAGTAACAGTGAGCTGTTGCAAGCTGTGCTCGTTA
GTGCAAGCGAAATTCCCGGATATTTTATCGTCTTGTTATGTGCCGATTTA
TTGGGCCGAAAACCGACCATAGCTCTTGGACTACTGTTTAATACGGCGAG
CTACATAAcgactttgttttgtttacCCCATATGGTTTCCATAGTAACGG
TTTTAATATCACGTGGTATTGCATGCGGTTATTCCTCCATTATGTTTTTG
TATACTGGAGAACTGCTGCCAACGATCGTCCGTAGTACAGGATCAGGAAT
ATGTTCTTCATTCGCAAAATTCTGTTGCGTTCTGGTCCCGTTTATTTTCC
AAGAGTTTGTTTACTGGTCACCGTTGGCAACATCTGCTATGATGGTCTTC
TTGTGTCTCCTGTGTCTTCTGGTTTTACCATTGTTGAAAGAAACGAAAGG
GGAATTATTGAAAGCTGTTGATTGAAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00035028-protein

>TCONS_00035028-protein ID=TCONS_00035028-protein|Name=TCONS_00035028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
SKYIMHIYAIRIFIMGKKGSGGVGGGVNHRFIEELPSNRFTYIVTIIMAS
VWFVVGTSLHVAAHIAPYIECQWNLTRFQTAISSSSVYLGESIGSIYFGG
LVDMHGRQRILLGVIVFCVYFYALAASATTFAMFVVLRFFNGAFAGAALV
ISCIYANESVKSKHRTAVFSIIGGAQSAGLFFSTFVAYFVLNRLGWRIYV
FIMSSSTLVFLPFIAWLPESLCFLQISGKQNEFKETLSRVSKIIAAPIPK
RYINVDDRPVHQQASYRFLFQRYGYVTSVCALLFAVSHMNYYSFIYMTTL
TVQNDQCYRHLTREKMVHCQELSNSELLQAVLVSASEIPGYFIVLLCADL
LGRKPTIALGLLFNTASYITTLFCLPHMVSIVTVLISRGIACGYSSIMFL
YTGELLPTIVRSTGSGICSSFAKFCCVLVPFIFQEFVYWSPLATSAMMVF
LCLLCLLVLPLLKETKGELLKAVD
Run BLAST on NCBI

transcript from alignment at sc0001240:20476..21905

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035028 ID=TCONS_00035028|Name=TCONS_00035028|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at sc0001240:20476..21905 (Clytia hemisphaerica)
CTCTTTCAATCAACAGCTTTCAATAATTCCCCTTTCGTTTCTTTCAACAA
TGGTAAAACCAGAAGACACAGGAGACACAAGAAGACCATCATAGCAGATG
TTGCCAACGGTGACCAGTAAACAAACTCTTGGAAAATAAACGGGACCAGA
ACGCAACAGAATTTTGCGAATGAAGAACATATTCCTGATCCTGTACTACG
GACGATCGTTGGCAGCAGTTCTCCAGTATACAAAAACATAATGGAGGAAT
AACCGCATGCAATACCACGTGATATTAAAACCGTTACTATGGAAACCATA
TGGGgtaaacaaaacaaagtcgTTATGTAGCTCGCCGTATTAAACAGTAG
TCCAAGAGCTATGGTCGGTTTTCGGCCCAATAAATCGGCACATAACAAGA
CGATAAAATATCCGGGAATTTCGCTTGCACTAACGAGCACAGCTTGCAAC
AGCTCACTGTTACTTAATTCCTGACAATGCACCATTTTTTCACGTGTTAA
ATGTCGGTAGCATTGATCGTTTTGTACGGTTAAGGTGGTCATGTAGATGA
AACTATAATAATTCATATGTGAAACCGCAAATAACAGCGCACAGACTGAT
GTGACATATCCATACCTTTGAAATAAGAAGCGATAACTAGCCTGTTGATG
CACTGGTCTGTCATCGACGTTGATGTAACGTTTTGGAATCGGGGCTGCGA
TGATTTTTGATACTCTAGATAGAGTTTCCTTAAATTCGTTCTGTTTTCCA
GAAATCTGTAAGAAGCAAAGTGATTCTGGTAGCCAAGCAATAAAAGGTAA
AAAAACTAGAGTGGAAGAGCTCATGATGAATACGTATATTCTCCATCCAA
GTCTGTTCAAAACGAAATACGCCACGAAAGTTGAGAAAAATAAACCAGCA
GATTGCGCACCTCCGATGATTGAGAAGACAGCAGTTCGGTGTTTCGATTT
GACGGATTCGTTAGCATAGATACAGGATATCACTAGGGCAGCGCCCGCAA
ACGCCCCGTTGAAGAAACGTAACACCACAAACATGGCAAAAGTAGTAGCG
CTGGCGGCAAGGGCGTAAAAATATACACAAAATACGATGACACCGAGTAG
AATTCTCTGACGTCCGTGCATGTCAACGAGGCCACCGAAATAAATGGAAC
CGATACTTTCTCCGAGGTAAACGGAAGATGAGCTAATGGCGGTCTGGAAA
CGAGTCAAATTCCATTGGCACTCGATGTAGGGCGCAATATGGGCGGCAAC
GTGGAGGGAGGTACCGACGACAAACCAAACCGATGCCATGATAATGGTGA
CGATATACGTGAAACGATTGGATGGTAGTTCTTCGATGAAACGATGGTTC
ACGCCCCCGCCAACGCCTCCTGATCCTTTCTTGCCCATGATGAATATGCG
TATTGCGTAGATATGCATAATGTATTTTGA

Coding sequence (CDS) from alignment at sc0001240:20476..21905

>TCONS_00035028 ID=TCONS_00035028|Name=TCONS_00035028|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0001240:20476..21905 (Clytia hemisphaerica)
TCAATCAACAGCTTTCAATAATTCCCCTTTCGTTTCTTTCAACAATGGTA
AAACCAGAAGACACAGGAGACACAAGAAGACCATCATAGCAGATGTTGCC
AACGGTGACCAGTAAACAAACTCTTGGAAAATAAACGGGACCAGAACGCA
ACAGAATTTTGCGAATGAAGAACATATTCCTGATCCTGTACTACGGACGA
TCGTTGGCAGCAGTTCTCCAGTATACAAAAACATAATGGAGGAATAACCG
CATGCAATACCACGTGATATTAAAACCGTTACTATGGAAACCATATGGGg
taaacaaaacaaagtcgTTATGTAGCTCGCCGTATTAAACAGTAGTCCAA
GAGCTATGGTCGGTTTTCGGCCCAATAAATCGGCACATAACAAGACGATA
AAATATCCGGGAATTTCGCTTGCACTAACGAGCACAGCTTGCAACAGCTC
ACTGTTACTTAATTCCTGACAATGCACCATTTTTTCACGTGTTAAATGTC
GGTAGCATTGATCGTTTTGTACGGTTAAGGTGGTCATGTAGATGAAACTA
TAATAATTCATATGTGAAACCGCAAATAACAGCGCACAGACTGATGTGAC
ATATCCATACCTTTGAAATAAGAAGCGATAACTAGCCTGTTGATGCACTG
GTCTGTCATCGACGTTGATGTAACGTTTTGGAATCGGGGCTGCGATGATT
TTTGATACTCTAGATAGAGTTTCCTTAAATTCGTTCTGTTTTCCAGAAAT
CTGTAAGAAGCAAAGTGATTCTGGTAGCCAAGCAATAAAAGGTAAAAAAA
CTAGAGTGGAAGAGCTCATGATGAATACGTATATTCTCCATCCAAGTCTG
TTCAAAACGAAATACGCCACGAAAGTTGAGAAAAATAAACCAGCAGATTG
CGCACCTCCGATGATTGAGAAGACAGCAGTTCGGTGTTTCGATTTGACGG
ATTCGTTAGCATAGATACAGGATATCACTAGGGCAGCGCCCGCAAACGCC
CCGTTGAAGAAACGTAACACCACAAACATGGCAAAAGTAGTAGCGCTGGC
GGCAAGGGCGTAAAAATATACACAAAATACGATGACACCGAGTAGAATTC
TCTGACGTCCGTGCATGTCAACGAGGCCACCGAAATAAATGGAACCGATA
CTTTCTCCGAGGTAAACGGAAGATGAGCTAATGGCGGTCTGGAAACGAGT
CAAATTCCATTGGCACTCGATGTAGGGCGCAATATGGGCGGCAACGTGGA
GGGAGGTACCGACGACAAACCAAACCGATGCCATGATAATGGTGACGATA
TACGTGAAACGATTGGATGGTAGTTCTTCGATGAAACGATGGTTCACGCC
CCCGCCAACGCCTCCTGATCCTTTCTTGCCCATGATGAATATGCGTATTG
CGTAGATATGCATAATGTATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020385XLOC_020385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035028-exon-sc0001240-1491911889:20476..21905TCONS_00035028-exon-sc0001240-1491911889:20476..21905Clytia hemisphaericaexon
TCONS_00035028-exon-sc0001240-1510915933:20476..21905TCONS_00035028-exon-sc0001240-1510915933:20476..21905Clytia hemisphaericaexon
TCONS_00035028-exon-sc0001240-1575043694:20476..21905TCONS_00035028-exon-sc0001240-1575043694:20476..21905Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035028-proteinTCONS_00035028-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001240supercontigsc0001240:20476..21905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3445	31.8196	12.7977	8.88349	14.8116	11.2089	10.4972	10.9464	5.41123	7.82484	6.06421	4.08313	6.04855	5.29811	4.10828	4.33799	4.84236	3.84541	1.76059	1.58376	2.5003	2.87761	31.3165	26.4722	3.05725	3.84221	3.54593	3.35911	16.9959	19.7147
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR005829Sugar_transporter_CS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00035028 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.992e-40
Identity = 107/410 (26.10%), Postives = 191/410 (46.59%), Query Frame = 1 
Query:   94 IEELPSNRFTYIVTIIMASVWFVVGTSLHVAAHIAPYIECQWNLTRFQTAISSSSVYLGESIGSIYFGGLVDMHGRQRILLGVIVFCVYFYALAASATTFAMFVVLRFFNGAFAGAALVISCIYANESVKSKHRTAVFSIIGGAQSAGLFFSTFVAYFVLNRLGWRIYVFIMSSSTLVFLPFIAWLPESLCFLQISGKQNEFKETLSRVSKIIAAPIPKRYINVDDRPVHQQASYRFLFQ-RYGYVTSVCALLFAVSHMNYYSFIYMTTLTVQNDQCYRHLTREKMVH------CQELSNSELLQAVLVSASEIPGYFIVLLCADLLGRKPTIALGLLFNTASYITTLFCLPHMVSIVTVLISRGIACGYSSIMFLYTGELLPTIVRSTGSGICSSFAKFCCVLVPFIFQ 1302
            +E +   +F + ++++    W      + + + +AP + C+W L  +Q A+ +S V++G    S  +G + D +GR+  L   +++ +Y+  L+A A  ++  +VLR   G   G       +YA E +  K R     +I    + G  F   +A FV+  LGWR  + + +   L+F     WLPES  +  +SG Q +   TL R++    AP+P   + +  +    +   R LF   + + T +   ++  +  +YY  + +TT   Q        +R+K V       C+ LS  + +  +  + SE PG  + L   D LGRK T+AL  +  +   +    C+   V  + + I+R    G     ++YT E+ PT  R+ G G CS  A+   ++ PFI Q
Sbjct:   74 VEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYA-EFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ--EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQ 480
The following BLAST results are available for this feature:
BLAST of TCONS_00035028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP3.992e-4026.10Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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