TCONS_00024149-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024149-protein
Unique NameTCONS_00024149-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024149-protein ID=TCONS_00024149-protein|Name=TCONS_00024149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MSIIGRCEAFRPGVSPKYTHNEDVVAKVGLASASLTLVSTLSIVCFILCK
HIQSNVQVKPLLHLSIADFLLAFAWVSANTAYLVKNDFEDVQQTAMSCFT
WQLITEIIHIVTFCFTINYSINVYFLMKDRVRSMGMDYTEQVHEMASLSA
IRLQRFKSLLYYISWLMPIILMLPIIIESKMENISSCQKCVIAIDVPRLV
NKVPPFIKAYGFILLAATLLLSMVTIMVLYGLTLRLYWRAIPAYHTDRQR
RQLSNMKKRISVYVVVFMVCWLPALILSIMKSREVWLDVEHKKVDLNDYF
ALYILQAVLTPLQGFFNTIVYGWSRRSFREATRQSLSSSQMFVPTPEFTS
AYYDQSPDFPNYIDDEPESETAFDPATKSKKQDSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013556XLOC_013556Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024149TCONS_00024149Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
IPR017981GPCR_2-like
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 256..280
score: 26.28
coord: 156..177
score: 17.2
coord: 303..329
score: 20.71
coord: 57..78
score: 21.73
coord: 211..234
score: 16.67
NoneNo IPR availableGENE3D1.20.1070.10coord: 12..341
e-value: 2.1E-25
score: 88.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 352..385
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 33..341
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 38..321
score: 17.302
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 22..325
score: 10.865

Blast
[Close]
BLAST of TCONS_00024149-protein vs. Swiss-Prot (Human)
Match: TM116 (Transmembrane protein 116 OS=Homo sapiens GN=TMEM116 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.873e-18
Identity = 59/214 (27.57%), Postives = 96/214 (44.86%), Query Frame = 0 
Query:  136 MDYTEQVHEMASLSAIRLQRFKSLLYYISWLMPIILMLPIIIESK----MENISSCQKCVIAIDVPRLVNKVPPFIKA--------YGFILLAATLLLSMVTIMVLYGLTLRLYWRAIP--AYHTDRQRRQLSNMKKRISVYVVVFMVCWLPALILSIMKSREVWLDVEHKKVDLNDYFALYILQAVLTPLQGFFNTIVYGWSRRSFREATRQS 335
            +DYT +V +MA              +  S L+P++LM P+          +N S   KC++    P  + ++PP            YG  +   + +LS++TIMVL      LY + +    +    Q   +  + +R+  Y V F  CW PA+IL I+K          K  D   + ALY+LQA+    QG  N  VYGW++  F +  +++
Sbjct:   15 IDYTCRVCQMA--------------FVFSSLIPLLLMTPVFCLGNTSECFQNFSQSHKCILMHSPPSAMAELPPSANTSVCSTLYFYGIAIFLGSFVLSLLTIMVLLIRAQTLYKKFVKSTGFLGSEQWAVIHIVDQRVRFYPVAFFCCWGPAVILMIIKLT--------KPQDTKLHMALYVLQALTATSQGLLNCGVYGWTQHKFHQLKQEA 206
The following BLAST results are available for this feature:
BLAST of TCONS_00024149-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1162.873e-1827.57Transmembrane protein 116 OS=Homo sapiens GN=TMEM1... [more]
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