TCONS_00023513-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023513-protein
Unique NameTCONS_00023513-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023513-protein ID=TCONS_00023513-protein|Name=TCONS_00023513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
MATKRGKINKMYQTPPQEVRSPRYSGVKSPNVRSRVMEKEELSGLNDRLA
TYIDRMRQLEQQNSKLSAEITTSKESQSREVAGVKVLYEAELAEARKLLD
DTSKEKALLQLENKKLNALTEELHQKLDKELTHRSRIEDELKRVERRLHE
KESLISVISKERKQLDEQVKDLEGELKRLEDELESQKKLLESEIIRRVEA
ENRAQTLEEEASFNAQIHQRELAELKSSSETFKLSIDRVDGGPADYDTLV
RDKLQELRDEFEDEAENAKEELETAYKIKFEDMRSSSDRERSQLSRIIEK
HALMSKEMEKLRSDYNLLESKNGSMQSRVSELEKLRLLDQEEFKQQLDDK
NDKIRVLNESLDNLEKEYETLLGIKIGLDIEIAAYRKMLEGEEERLKIPT
PQSERTVRRRGTKRGREEDSPPEVENVAAGNIEVEECDIEGKYIKLKNNS
ENDEPLGGWFIQRIIDGKEDEAVEYKFTPKYILKGGQSVTVWSQSAGVKH
KAPTDMVMKGSDWNTGSEMITNIINAEAEILAKYTMKVVSEGTYRRSRKR
RTGGERESCALM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013214XLOC_013214Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023513TCONS_00023513Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001664IF
IPR001322Lamin_tail_dom
IPR018039Intermediate_filament_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005882intermediate filament
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005882 intermediate filament
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 301..328
NoneNo IPR availableCOILSCoilCoilcoord: 85..210
NoneNo IPR availableCOILSCoilCoilcoord: 340..374
NoneNo IPR availableCOILSCoilCoilcoord: 251..278
NoneNo IPR availableCOILSCoilCoilcoord: 42..76
NoneNo IPR availableGENE3D1.20.5.170coord: 41..93
e-value: 0.01
score: 15.5
coord: 353..397
e-value: 1.2E-14
score: 53.7
NoneNo IPR availableGENE3D1.20.5.190coord: 303..352
e-value: 0.16
score: 11.4
NoneNo IPR availableGENE3D1.20.5.50coord: 94..243
e-value: 0.0023
score: 16.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 396..425
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableSUPERFAMILY64593Intermediate filament protein, coiled coil regioncoord: 324..395
NoneNo IPR availableSUPERFAMILY64593Intermediate filament protein, coiled coil regioncoord: 38..70
IPR001664Intermediate filament proteinSMARTSM01391Filament_2coord: 37..395
e-value: 4.4E-21
score: 86.0
IPR001664Intermediate filament proteinPFAMPF00038Filamentcoord: 160..395
e-value: 2.0E-32
score: 113.0
coord: 38..177
e-value: 3.4E-25
score: 89.2
IPR001322Lamin Tail DomainGENE3D2.60.40.1260coord: 398..542
e-value: 2.3E-25
score: 88.9
IPR001322Lamin Tail DomainPFAMPF00932LTDcoord: 428..535
e-value: 8.2E-12
score: 45.4
IPR001322Lamin Tail DomainSUPERFAMILY74853Lamin A/C globular tail domaincoord: 414..537
IPR018039Intermediate filament protein, conserved sitePROSITEPS00226IFcoord: 382..390

Blast
[Close]
BLAST of TCONS_00023513-protein vs. Swiss-Prot (Human)
Match: LMNB2 (Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=4)

HSP 1 Score: 298.13 bits (762), Expect = 2.623e-93
Identity = 199/547 (36.38%), Postives = 310/547 (56.67%), Query Frame = 0 
Query:   29 SPNVRSRVMEKEELSGLNDRLATYIDRMRQLEQQNSKLSAEITTSKESQSREVAGVKVLYEAELAEARKLLDDTSKEKALLQLENKKLNALTEELHQKLDKELTHRSRIEDELKRVERRLHEKESLISVISKERKQLDEQVKDLEGELKRLEDELESQKKLLESEIIRRVEAENRAQTLEEEASFNAQIHQRELAELKSSSETFKLSIDRVDGGPADYDTLVRDKLQELRDEFEDEAENAKEELETAYKIKFEDMRSSSDRERSQLSRIIEKHALMSKEMEKLRSDYNLLESKNGSMQSRVSELEKLRLLDQEEFKQQLDDKNDKIRVLNESLDNLEKEYETLLGIKIGLDIEIAAYRKMLEGEEERLKI-PTPQSERTVRRRG---------------TKRGREE-----DSPPEV---------------ENVAAGNIEVEECDIEGKYIKLKNNSENDEPLGGWFIQR-IIDGKEDEAVEYKFTPKYILKGGQSVTVWSQSAGVKHKAPTDMVMKG-SDWNTGSEMITNIINAEAEILAKYTMK 537
            SP   SR+ EKEEL  LNDRLA YIDR+R LE +N +L  +I+  +E  +REV+G+K LYE+ELA+AR++LD+T++E+A LQ+E  KL A  +E+++   K     +  +  +K +E   H  E  ++    +++ L+  V +L  +L + ED     KK LE E + RV+ ENR Q+L+EE  F   + + E+ E +   E   + +D       +YD  +   L+ELR + +++    K ELE  Y+ K +  + SSD+     S   E+       +E L    + L+ +  + + R+ ELE+    ++++F++ LD K  ++  + + +     EY+ LL +K+ LD+EI AYRK+LEGEEERLK+ P+P S  TV R                 +KR R E      S P V               +  A+G++ +EE D+EGK+++LKNNS+ D+ LG W I+R +++G+E   + YKFTPKYIL+ GQ VTVW+  AGV H  P+ +V KG S W TG    T ++NA+ E +A  T+K
Sbjct:   37 SPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLKISEKEEVTTREVSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGRVKDLESLFHRSEVELAAALSDKRGLESDVAELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELDFRKSVFEEEVRETRRRHERRLVEVD--SSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRATSSSSGSLSATGRLGRSKRKRLEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEE---IAYKFTPKYILRAGQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRTVK 578
The following BLAST results are available for this feature:
BLAST of TCONS_00023513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMNB22.623e-9336.38Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=4[more]
back to top