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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023513 ID=TCONS_00023513|Name=TCONS_00023513|organism=Clytia hemisphaerica|type=transcript|length=2995bpRun BLAST on NCBI protein sequence of TCONS_00023513-protein >TCONS_00023513-protein ID=TCONS_00023513-protein|Name=TCONS_00023513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp MATKRGKINKMYQTPPQEVRSPRYSGVKSPNVRSRVMEKEELSGLNDRLARun BLAST on NCBI transcript from alignment at sc0000455:34908..49761- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023513 ID=TCONS_00023513|Name=TCONS_00023513|organism=Clytia hemisphaerica|type=transcript|length=14854bp|location=Sequence derived from alignment at sc0000455:34908..49761- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000455:34908..49761- >TCONS_00023513 ID=TCONS_00023513|Name=TCONS_00023513|organism=Clytia hemisphaerica|type=CDS|length=18579bp|location=Sequence derived from alignment at sc0000455:34908..49761- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023513 vs. Swiss-Prot (Human)
Match: LMNB2 (Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=4) HSP 1 Score: 259.225 bits (661), Expect = 2.522e-74 Identity = 195/547 (35.65%), Postives = 306/547 (55.94%), Query Frame = 3
Query: 429 SPNVRSRVMEKEELSGLNDRLATYIDRMRQLEQQNSKLSAEITTSKESQSREVAGVKVLYEAELAEARKLLDDTSKEKALLQLENKKLNALTEELHQKLDKELTHRSRIEDELKRVERRLHEKESLISVISKERKQLDEQVKDLEGELKRXXXXXXXXXXXXXXXIIRRVEAENRAQTLEEEASFNAQIHQRELAELKSSSETFKLSIDRVDGGPADYDTLVRDKLQELRDXXXXXXXXXXXXXXXXYKIKFXXXXXXXXXXXXQLSRIIEKHALMSKEMEKLRSDYNLLESKNGSMQSRVSELEKLRLLDQEEFKQQLDDKNDKIRVLNESLDNLEKEYETLLGIKIGLDIEIAAYRKMLEGEEERLKI-PTPQSXXXXXXXXXXXXXXX--------------------DSPPEV---------------ENVAAGNIEVEECDIEGKYIKLKNNSENDEPLGGWFIQR-IIDGKEDEAVEYKFTPKYILKGGQSVTVWSQSAGVKHKAPTDMVMKG-SDWNTGSEMITNIINAEAEILAKYTMK 1955
SP SR+ EKEEL LNDRLA YIDR+R LE +N +L +I+ +E +REV+G+K LYE+ELA+AR++LD+T++E+A LQ+E KL A +E+++ K + + +K +E H E ++ +++ L+ V +L +L + ED KK LE E + RV+ ENR Q+L+EE F + + E+ E + E + +D +YD + L+ELR + +++ K ELE Y+ K + + SSD+ S E+ +E L + L+ + + + R+ ELE+ ++++F++ LD K ++ + + + EY+ LL +K+ LD+EI AYRK+LEGEEERLK+ P+P S TV R + S P V + A+G++ +EE D+EGK+++LKNNS+ D+ LG W I+R +++G+E + YKFTPKYIL+ GQ VTVW+ AGV H P+ +V KG S W TG T ++NA+ E +A T+K
Sbjct: 37 SPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLKISEKEEVTTREVSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGRVKDLESLFHRSEVELAAALSDKRGLESDVAELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELDFRKSVFEEEVRETRRRHERRLVEVD--SSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRATSSSSGSLSATGRLGRSKRKRLEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEE---IAYKFTPKYILRAGQMVTVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRTVK 578 The following BLAST results are available for this feature:
BLAST of TCONS_00023513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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