TCONS_00015688-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015688-protein
Unique NameTCONS_00015688-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015688-protein ID=TCONS_00015688-protein|Name=TCONS_00015688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSFDKNYNSTFKVLVLGESGVGKTSIIRRFTEEQYQESYISTIGIDSRSK
VVNIGDENVRLQIWDTAGQERFRTLTSAYYRGAMGIILVYDVTSEYSFSS
ITNWLETIVQNASKNVCKLLVGNKIDCEEDYKVISTEKGKERADDTGLQF
FETSAKTGDKINEVFMEMGKMINEAKRKKLEEAQEPNVDLLTTKQHSGSS
CSC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008754XLOC_008754Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015688TCONS_00015688Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 150..172
score: 36.12
coord: 34..50
score: 29.06
coord: 11..32
score: 43.35
coord: 114..127
score: 47.29
coord: 52..74
score: 50.99
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 13..175
e-value: 7.7E-12
score: 31.9
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..176
e-value: 0.0024
score: 2.9
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 16..191
e-value: 5.6E-5
score: 21.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 8..175
e-value: 3.0E-31
score: 119.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..175
e-value: 3.0E-78
score: 275.9
NoneNo IPR availableGENE3D3.40.50.300coord: 75..173
e-value: 2.4E-34
score: 116.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..74
e-value: 5.3E-30
score: 102.7
NoneNo IPR availablePROSITEPS51419RABcoord: 4..203
score: 33.697
NoneNo IPR availableCDDcd00154Rabcoord: 11..170
e-value: 9.67612E-80
score: 236.584
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 12..172
e-value: 1.1E-57
score: 194.0
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 9..166
e-value: 2.9E-28
score: 96.7
IPR025662Sigma-54 interaction domain, ATP-binding site 1PROSITEPS00675SIGMA54_INTERACT_1coord: 13..26
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..181

Blast
[Close]
BLAST of TCONS_00015688-protein vs. Swiss-Prot (Human)
Match: RAB13 (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.929e-61
Identity = 93/200 (46.50%), Postives = 138/200 (69.00%), Query Frame = 0 
Query:    5 KNYNSTFKVLVLGESGVGKTSIIRRFTEEQYQESYISTIGIDSRSKVVNIGDENVRLQIWDTAGQERFRTLTSAYYRGAMGIILVYDVTSEYSFSSITNWLETIVQNASKNVCKLLVGNKIDCEEDYKVISTEKGKERADDTGLQFFETSAKTGDKINEVFMEMGK--MINEAKRKKLEEAQEPNVDLLTTKQHSGSSCS 202
            K Y+  FK+L++G+SGVGKT +I RF E+ +  +YISTIGID + + V+I  + ++LQ+WDTAGQERF+T+T+AYYRGAMGIILVYD+T E SF +I NW+++I +NAS  V +LL+GNK D E   KV   E+  + A + G++FFETSAK+   ++E F  + +  ++    R+     + P+ DL T  + + + CS
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKV-QKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLKTCDKKNTNKCS 201
The following BLAST results are available for this feature:
BLAST of TCONS_00015688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB132.929e-6146.50Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
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