TCONS_00015688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015688
Unique NameTCONS_00015688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015688 ID=TCONS_00015688|Name=TCONS_00015688|organism=Clytia hemisphaerica|type=transcript|length=2200bp
CCAGCTTGTTAAAATCTGTGGTTAACCTGATCAAGCTGATGAACTGATCA
AAGCTAATGAAACAACCCGGCTAATAAAAATCCTTTTTAACCACTGGATG
AAATTTCAAATGTTATACACCAAATTTTGAGTGTGCCCTACTAACCTGGT
TAGAACATCTTTTTACCATGCTATGTGAACTCTGTTATCAATAATTTGTT
ATTTATtgtttagtttgtataaaaagtaaatgaagaacttttaaaagcaa
aacttttaaaagctTGTATAGGATACAAGGATGTCATTTGACAAGAATTA
CAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAAAA
CTTCTATCATCAGACGATTTACCGAAGAACAATACCAAGAATCTTACATC
TCGACCATAGGAATTGATTCGAGATCGAAAGTTGTAAACATTGGAGATGA
AAATGTCAGGTTACAAATTTGGGATACTGCAGGACAGGAGAGATTTCGAA
CACTTACAAGTGCTTACTACCGTGGTGCAATGgGCATTATTCTAGTTTAT
GATGTGACGTCAGAATACTCTTTTTCCAGTATTACAAATTGGTTGGAAAC
AATTGTTCAGaATGCGTCAAAGAATGTTTGTAAATTGTTGGTTGGGAATA
AAATCGACTGTGAAGAAGATTACAAGGTCATCTCTACCGAAAAAGGAAAA
GAGCGAGCAGATGACACAGGTCTCCAGTTCTTTGAAACAAGTGCAAAGAC
AGGAGATAAAATAAACGAGGTTTTTATGGAGATGGGTAAAATGATAAATG
AAGCAAAAAGGAAAAAGctgGAAGAAGCACAAGAACCCAATGTGGATCTA
CTGACAACAAAACAGCATTCTGGTAGTTCGTGCTCTTGTTAACACGTATG
ATTATTTGGTGACAATAGACAATTGTGAGCTACAGATTATgatgggtcat
ttttttgtcTGTAGAAGTCGTTTCCTGGAATAGGTCAGGTGTTTGTCCAG
ATCCCAGATTTCTATAGACAAAATGAGAGTTCCTGACACGCATTATCTTT
GGACGAAGAGAGTTATGATAGGAATATCTTAAATTAAATTTGCACGCATT
AGAATAATTTATTTACTTGCattcaaaatgtttgaaattttgatagatTT
TATACGCAATCTTTTTTATTACAGCATTacagtttcattttttatgattt
acaaattgtaaaatagttttttatttgagatttttaatatggggtttctt
tttttttctttaagttaTATTCAACTTTGGCCAaaagttttgtttaaaat
taaAACTTACTAGTTTTGTAAAAACTTACAAAGTTTGTTTtaggaaaaag
aaagaagataaaGCTGGATAAagtaattaatttttgaaatactaCCAACA
CACATATGTAcgctttttgataaaatcagtAAATTCTGGCTGCTCTTTAA
TTCTCGAAAATTTTAGGCGCCGATTGGCTTGAGATGCTCTTTACACGTTT
ATCCTTAGACTAAAGTCTTTTAAATCCGTATTTTTAGCACCAACAGAAAT
ATGAGGCCTATGTCAGCCAAATTTGATTCGCTTCATTTAGTACTATACAG
TAAATAGTTTATCGAATCGGCATCGAGAAATCGGGAGGAAAACGAATCTT
CCCGGATTAAAATAAAGGTAATACACAGgctgaaaaattttaaagtctga
agacaaatcacgctttttctcgaaatttttataTGCTTGTTACATgatat
ttatttctgattggttcgaatttactgacattaataaagttatcatatca
gctgtaagttctaaagcaagtaacatgggaataaaatctcATGAATAACt
ctttcgagtaatcacatgttttgactgcactggTATAATTTTGTAACCCG
TGTATTCAATGGTTAAAGTATTGTGACGTCACGCCTCATAAAAAATGAAC
TCGAATGTTTATCCACAACTTCCAACCTTCGTCGTCACAATCATCGCATG
TATCTAGataattttgtagatttttacagatataaatgaattttttgtat
aGAGCTATATTGTTAGAGCTATTCTTTGAGGAAAAATTATAATAATTGAA
TGAATAATAATTTTAGACGATTTTTAGTTAAAGATAACTATTAGAATATT
TAAGAacgaaatttttttcattattttaatttttttttaatgtcattCGG
Run BLAST on NCBI

protein sequence of TCONS_00015688-protein

>TCONS_00015688-protein ID=TCONS_00015688-protein|Name=TCONS_00015688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSFDKNYNSTFKVLVLGESGVGKTSIIRRFTEEQYQESYISTIGIDSRSK
VVNIGDENVRLQIWDTAGQERFRTLTSAYYRGAMGIILVYDVTSEYSFSS
ITNWLETIVQNASKNVCKLLVGNKIDCEEDYKVISTEKGKERADDTGLQF
FETSAKTGDKINEVFMEMGKMINEAKRKKLEEAQEPNVDLLTTKQHSGSS
CSC
Run BLAST on NCBI

transcript from alignment at sc0000215:226387..229773-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015688 ID=TCONS_00015688|Name=TCONS_00015688|organism=Clytia hemisphaerica|type=transcript|length=3387bp|location=Sequence derived from alignment at sc0000215:226387..229773- (Clytia hemisphaerica)
CCAGCTTGTTAAAATCTGTGGTTAACCTGATCAAGCTGATGAACTGATCA
AAGCTAATGAAACAACCCGGCTAATAAAAATCCTTTTTAACCACTGGATG
AAATTTCAAATGTTATACACCAAATTTTGAGTGTGCCCTACTAACCTGGT
TAGAACATCTTTTTACCATGCTATGTGAACTCTGTTATCAATAATTTGTT
ATTTATTGTTTAGTTTGTATAAAAAGTAAATGAAGAACTTTTAAAAGCAA
AACTTTTAAAAGCTTGTATAGGATACAAGGATGTCATTTGACAAGAATTA
CAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAAAA
CTTCTATCATCAGACGATTTACCGAAGAACAATACCAAGAATCTTACATC
TCGACCATAGGTATCTAAATATCTGTGGTGATTATTGATATTTAATGGAA
ATTATTGTACCATAATGTATAATCTTTTACAGTCAATTTCTTTGCATTGT
ATACATTATAAATCCAAAAAAAACTCGTTCTCTAAATTTCATAGGAATTG
ATTCGAGATCGAAAGTTGTAAACATTGGAGATGAAAATGTCAGGTTACAA
ATTTGGTAAGGACTGATATTATCCTGAAAAAGAGATTCAGGAATTACATT
TTTAAGACAAGGACAGAAGACAAATCTGGACAAATCAATGAGCTGACTGT
TAAATTTTCCGATCAATAAAATAACAGCGCATTAAAATTGTCATAAATGT
CTGTTTCAGGGATACTGCAGGACAGGAGAGATTTCGAACACTTACAAGTG
CTTACTACCGTGGTGCAATGGTATGTATAGATTTCAAACATTGTAAAATC
GCCCAAACATTCAAAAAGATTATAAGGTATAAATAATAAGTCTATTTAGA
GCAAGATAACCTGATGATCCACCCTTTCGCTTTTTATGTGGCCTTTTTAT
TATTTATTTTTCTTTTCTAGGGCATTATTCTAGTTTATGATGTGACGTCA
GAATACTCTTTTTCCAGTATTACAAATTGGTTGGAAACAATTGTTCAGGT
TTGAAAGATATTTATTACAAAGACATTGAACATTGATTAGTTAACTACTT
ATTTTTATTACTTACAAGTCAAAATCAGAATGTTTTCAAATATTTATTTA
CTTACACTAACTATGGAATGATCTTTTTTTGCATATTTTTAGAATGCGTC
AAAGAATGTTTGTAAATTGTTGGTTGGGAATAAAATCGACTGTGAAGAAG
ATTACAAGGTCATCTCTACCGAAAAAGGAAAAGAGGTATCAATCATTATG
AACTTGTCATTGATTATTCTAAAAACAACTCATCTAATGCCCTCAAAGAT
ATCAAATTTGGTGGACCCCAAAGCCTACTATTTTAAAAGCTCTAGGAAAA
AAACTCCAATTTAAATCAATTTAATAAAAACCAAGAAGTAAACAATATTT
CCTGACAGTCTGACTGGTGATGATCATCACCCTGTGATAGGGTCAAAATG
TTTTATTATTGCATTTATTAAGATTAACCGTAAATTTGTGTACAAAATAA
AACGCCTTTGACTTAATCCTTTTATTTTTGTTCACTAGCGAGCAGATGAC
ACAGGTCTCCAGTTCTTTGAAACAAGTGCAAAGACAGGAGATAAAATAAA
CGAGGTAATAAATTTGTCTTCACCTTTATTGAACATAATTTTTTGTACAA
GGGGTTCGCATTCGAATTAACAAGTTAAAAACTGAATAATAACAACCAAT
GCCAATGGGAAAATTGAAAAAAGACGGTGTTCATTATATCCTATCTTGCC
TACTTACACATTCCTTTCTTTCATAATTTTATAGGTTTTTATGGAGATGG
GTAAAATGATAAATGAAGCAAAAAGGAAAAAGGTATATACATCAATAATA
GTATCTCTAAAGTGTTCAAATTTATTTATGATAGAACATATAATACCCAA
AATGATAATTATTTTACTTCAAGATCGTTATATAGATACTTTTTATTTTT
TCAGCTGGAAGAAGCACAAGAACCCAATGTGGATCTACTGACAACAAAAC
AGCATTCTGGTAGTTCGTGCTCTTGTTAACACGTATGATTATTTGGTGAC
AATAGACAATTGTGAGCTACAGATTATGATGGGTCATTTTTTTGTCTGTA
GAAGTCGTTTCCTGGAATAGGTCAGGTGTTTGTCCAGATCCCAGATTTCT
ATAGACAAAATGAGAGTTCCTGACACGCATTATCTTTGGACGAAGAGAGT
TATGATAGGAATATCTTAAATTAAATTTGCACGCATTAGAATAATTTATT
TACTTGCATTCAAAATGTTTGAAATTTTGATAGATTTTATACGCAATCTT
TTTTATTACAGCATTACAGTTTCATTTTTTATGATTTACAAATTGTAAAA
TAGTTTTTTATTTGAGATTTTTAATATGGGGTTTCTTTTTTTTTCTTTAA
GTTATATTCAACTTTGGCCAAAAGTTTTGTTTAAAATTAAAACTTACTAG
TTTTGTAAAAACTTACAAAGTTTGTTTTAGGAAAAAGAAAGAAGATAAAG
CTGGATAAAGTAATTAATTTTTGAAATACTACCAACACACATATGTACGC
TTTTTGATAAAATCAGTAAATTCTGGCTGCTCTTTAATTCTCGAAAATTT
TAGGCGCCGATTGGCTTGAGATGCTCTTTACACGTTTATCCTTAGACTAA
AGTCTTTTAAATCCGTATTTTTAGCACCAACAGAAATATGAGGCCTATGT
CAGCCAAATTTGATTCGCTTCATTTAGTACTATACAGTAAATAGTTTATC
GAATCGGCATCGAGAAATCGGGAGGAAAACGAATCTTCCCGGATTAAAAT
AAAGGTAATACACAGGCTGAAAAATTTTAAAGTCTGAAGACAAATCACGC
TTTTTCTCGAAATTTTTATATGCTTGTTACATGATATTTATTTCTGATTG
GTTCGAATTTACTGACATTAATAAAGTTATCATATCAGCTGTAAGTTCTA
AAGCAAGTAACATGGGAATAAAATCTCATGAATAACTCTTTCGAGTAATC
ACATGTTTTGACTGCACTGGTATAATTTTGTAACCCGTGTATTCAATGGT
TAAAGTATTGTGACGTCACGCCTCATAAAAAATGAACTCGAATGTTTATC
CACAACTTCCAACCTTCGTCGTCACAATCATCGCATGTATCTAGATAATT
TTGTAGATTTTTACAGATATAAATGAATTTTTTGTATAGAGCTATATTGT
TAGAGCTATTCTTTGAGGAAAAATTATAATAATTGAATGAATAATAATTT
TAGACGATTTTTAGTTAAAGATAACTATTAGAATATTTAAGAACGAAATT
TTTTTCATTATTTTAATTTTTTTTTAATGTCATTCGG

Coding sequence (CDS) from alignment at sc0000215:226387..229773-

>TCONS_00015688 ID=TCONS_00015688|Name=TCONS_00015688|organism=Clytia hemisphaerica|type=CDS|length=4896bp|location=Sequence derived from alignment at sc0000215:226387..229773- (Clytia hemisphaerica)
CTGGAAGAAGCACAAGAACCCAATGTGGATCTACTGACAACAAAACAGCA
TTCTGGTAGTTCGTGCTCTTGTTAAGTTTTTATGGAGATGGGTAAAATGA
TAAATGAAGCAAAAAGGAAAAAGCGAGCAGATGACACAGGTCTCCAGTTC
TTTGAAACAAGTGCAAAGACAGGAGATAAAATAAACGAGAATGCGTCAAA
GAATGTTTGTAAATTGTTGGTTGGGAATAAAATCGACTGTGAAGAAGATT
ACAAGGTCATCTCTACCGAAAAAGGAAAAGAGGGCATTATTCTAGTTTAT
GATGTGACGTCAGAATACTCTTTTTCCAGTATTACAAATTGGTTGGAAAC
AATTGTTCAGGGATACTGCAGGACAGGAGAGATTTCGAACACTTACAAGT
GCTTACTACCGTGGTGCAATGGAATTGATTCGAGATCGAAAGTTGTAAAC
ATTGGAGATGAAAATGTCAGGTTACAAATTTGATGTCATTTGACAAGAAT
TACAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAA
AACTTCTATCATCAGACGATTTACCGAAGAACAATACCAAGAATCTTACA
TCTCGACCATAGCTGGAAGAAGCACAAGAACCCAATGTGGATCTACTGAC
AACAAAACAGCATTCTGGTAGTTCGTGCTCTTGTTAAGTTTTTATGGAGA
TGGGTAAAATGATAAATGAAGCAAAAAGGAAAAAGCGAGCAGATGACACA
GGTCTCCAGTTCTTTGAAACAAGTGCAAAGACAGGAGATAAAATAAACGA
GAATGCGTCAAAGAATGTTTGTAAATTGTTGGTTGGGAATAAAATCGACT
GTGAAGAAGATTACAAGGTCATCTCTACCGAAAAAGGAAAAGAGGGCATT
ATTCTAGTTTATGATGTGACGTCAGAATACTCTTTTTCCAGTATTACAAA
TTGGTTGGAAACAATTGTTCAGGGATACTGCAGGACAGGAGAGATTTCGA
ACACTTACAAGTGCTTACTACCGTGGTGCAATGGAATTGATTCGAGATCG
AAAGTTGTAAACATTGGAGATGAAAATGTCAGGTTACAAATTTGATGTCA
TTTGACAAGAATTACAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTC
TGGCGTGGGCAAAACTTCTATCATCAGACGATTTACCGAAGAACAATACC
AAGAATCTTACATCTCGACCATAGCTGGAAGAAGCACAAGAACCCAATGT
GGATCTACTGACAACAAAACAGCATTCTGGTAGTTCGTGCTCTTGTTAAG
TTTTTATGGAGATGGGTAAAATGATAAATGAAGCAAAAAGGAAAAAGCGA
GCAGATGACACAGGTCTCCAGTTCTTTGAAACAAGTGCAAAGACAGGAGA
TAAAATAAACGAGAATGCGTCAAAGAATGTTTGTAAATTGTTGGTTGGGA
ATAAAATCGACTGTGAAGAAGATTACAAGGTCATCTCTACCGAAAAAGGA
AAAGAGGGCATTATTCTAGTTTATGATGTGACGTCAGAATACTCTTTTTC
CAGTATTACAAATTGGTTGGAAACAATTGTTCAGGGATACTGCAGGACAG
GAGAGATTTCGAACACTTACAAGTGCTTACTACCGTGGTGCAATGGAATT
GATTCGAGATCGAAAGTTGTAAACATTGGAGATGAAAATGTCAGGTTACA
AATTTGATGTCATTTGACAAGAATTACAACAGTACTTTCAAAGTTCTTGT
TCTTGGGGAGTCTGGCGTGGGCAAAACTTCTATCATCAGACGATTTACCG
AAGAACAATACCAAGAATCTTACATCTCGACCATAGCTGGAAGAAGCACA
AGAACCCAATGTGGATCTACTGACAACAAAACAGCATTCTGGTAGTTCGT
GCTCTTGTTAAGTTTTTATGGAGATGGGTAAAATGATAAATGAAGCAAAA
AGGAAAAAGCGAGCAGATGACACAGGTCTCCAGTTCTTTGAAACAAGTGC
AAAGACAGGAGATAAAATAAACGAGAATGCGTCAAAGAATGTTTGTAAAT
TGTTGGTTGGGAATAAAATCGACTGTGAAGAAGATTACAAGGTCATCTCT
ACCGAAAAAGGAAAAGAGGGCATTATTCTAGTTTATGATGTGACGTCAGA
ATACTCTTTTTCCAGTATTACAAATTGGTTGGAAACAATTGTTCAGGGAT
ACTGCAGGACAGGAGAGATTTCGAACACTTACAAGTGCTTACTACCGTGG
TGCAATGGAATTGATTCGAGATCGAAAGTTGTAAACATTGGAGATGAAAA
TGTCAGGTTACAAATTTGATGTCATTTGACAAGAATTACAACAGTACTTT
CAAAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAAAACTTCTATCATCA
GACGATTTACCGAAGAACAATACCAAGAATCTTACATCTCGACCATAGCT
GGAAGAAGCACAAGAACCCAATGTGGATCTACTGACAACAAAACAGCATT
CTGGTAGTTCGTGCTCTTGTTAAGTTTTTATGGAGATGGGTAAAATGATA
AATGAAGCAAAAAGGAAAAAGCGAGCAGATGACACAGGTCTCCAGTTCTT
TGAAACAAGTGCAAAGACAGGAGATAAAATAAACGAGAATGCGTCAAAGA
ATGTTTGTAAATTGTTGGTTGGGAATAAAATCGACTGTGAAGAAGATTAC
AAGGTCATCTCTACCGAAAAAGGAAAAGAGGGCATTATTCTAGTTTATGA
TGTGACGTCAGAATACTCTTTTTCCAGTATTACAAATTGGTTGGAAACAA
TTGTTCAGGGATACTGCAGGACAGGAGAGATTTCGAACACTTACAAGTGC
TTACTACCGTGGTGCAATGGAATTGATTCGAGATCGAAAGTTGTAAACAT
TGGAGATGAAAATGTCAGGTTACAAATTTGATGTCATTTGACAAGAATTA
CAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAAAA
CTTCTATCATCAGACGATTTACCGAAGAACAATACCAAGAATCTTACATC
TCGACCATAGCTGGAAGAAGCACAAGAACCCAATGTGGATCTACTGACAA
CAAAACAGCATTCTGGTAGTTCGTGCTCTTGTTAAGTTTTTATGGAGATG
GGTAAAATGATAAATGAAGCAAAAAGGAAAAAGCGAGCAGATGACACAGG
TCTCCAGTTCTTTGAAACAAGTGCAAAGACAGGAGATAAAATAAACGAGA
ATGCGTCAAAGAATGTTTGTAAATTGTTGGTTGGGAATAAAATCGACTGT
GAAGAAGATTACAAGGTCATCTCTACCGAAAAAGGAAAAGAGGGCATTAT
TCTAGTTTATGATGTGACGTCAGAATACTCTTTTTCCAGTATTACAAATT
GGTTGGAAACAATTGTTCAGGGATACTGCAGGACAGGAGAGATTTCGAAC
ACTTACAAGTGCTTACTACCGTGGTGCAATGGAATTGATTCGAGATCGAA
AGTTGTAAACATTGGAGATGAAAATGTCAGGTTACAAATTTGATGTCATT
TGACAAGAATTACAACAGTACTTTCAAAGTTCTTGTTCTTGGGGAGTCTG
GCGTGGGCAAAACTTCTATCATCAGACGATTTACCGAAGAACAATACCAA
GAATCTTACATCTCGACCATAGCTGGAAGAAGCACAAGAACCCAATGTGG
ATCTACTGACAACAAAACAGCATTCTGGTAGTTCGTGCTCTTGTTAAGTT
TTTATGGAGATGGGTAAAATGATAAATGAAGCAAAAAGGAAAAAGCGAGC
AGATGACACAGGTCTCCAGTTCTTTGAAACAAGTGCAAAGACAGGAGATA
AAATAAACGAGAATGCGTCAAAGAATGTTTGTAAATTGTTGGTTGGGAAT
AAAATCGACTGTGAAGAAGATTACAAGGTCATCTCTACCGAAAAAGGAAA
AGAGGGCATTATTCTAGTTTATGATGTGACGTCAGAATACTCTTTTTCCA
GTATTACAAATTGGTTGGAAACAATTGTTCAGGGATACTGCAGGACAGGA
GAGATTTCGAACACTTACAAGTGCTTACTACCGTGGTGCAATGGAATTGA
TTCGAGATCGAAAGTTGTAAACATTGGAGATGAAAATGTCAGGTTACAAA
TTTGATGTCATTTGACAAGAATTACAACAGTACTTTCAAAGTTCTTGTTC
TTGGGGAGTCTGGCGTGGGCAAAACTTCTATCATCAGACGATTTACCGAA
GAACAATACCAAGAATCTTACATCTCGACCATAGCTGGAAGAAGCACAAG
AACCCAATGTGGATCTACTGACAACAAAACAGCATTCTGGTAGTTCGTGC
TCTTGTTAAGTTTTTATGGAGATGGGTAAAATGATAAATGAAGCAAAAAG
GAAAAAGCGAGCAGATGACACAGGTCTCCAGTTCTTTGAAACAAGTGCAA
AGACAGGAGATAAAATAAACGAGAATGCGTCAAAGAATGTTTGTAAATTG
TTGGTTGGGAATAAAATCGACTGTGAAGAAGATTACAAGGTCATCTCTAC
CGAAAAAGGAAAAGAGGGCATTATTCTAGTTTATGATGTGACGTCAGAAT
ACTCTTTTTCCAGTATTACAAATTGGTTGGAAACAATTGTTCAGGGATAC
TGCAGGACAGGAGAGATTTCGAACACTTACAAGTGCTTACTACCGTGGTG
CAATGGAATTGATTCGAGATCGAAAGTTGTAAACATTGGAGATGAAAATG
TCAGGTTACAAATTTGATGTCATTTGACAAGAATTACAACAGTACTTTCA
AAGTTCTTGTTCTTGGGGAGTCTGGCGTGGGCAAAACTTCTATCATCAGA
CGATTTACCGAAGAACAATACCAAGAATCTTACATCTCGACCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008754XLOC_008754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015688-exon-sc0000215-1575043694:229364..229773TCONS_00015688-exon-sc0000215-1575043694:229364..229773Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:229169..229229TCONS_00015688-exon-sc0000215-1575043694:229169..229229Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:228954..229014TCONS_00015688-exon-sc0000215-1575043694:228954..229014Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:228726..228803TCONS_00015688-exon-sc0000215-1575043694:228726..228803Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:228489..228581TCONS_00015688-exon-sc0000215-1575043694:228489..228581Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:228120..228185TCONS_00015688-exon-sc0000215-1575043694:228120..228185Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:227892..227939TCONS_00015688-exon-sc0000215-1575043694:227892..227939Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1575043694:226387..227769TCONS_00015688-exon-sc0000215-1575043694:226387..227769Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:229364..229773TCONS_00015688-exon-sc0000215-1510915933:229364..229773Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:229169..229229TCONS_00015688-exon-sc0000215-1510915933:229169..229229Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:228954..229014TCONS_00015688-exon-sc0000215-1510915933:228954..229014Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:228726..228803TCONS_00015688-exon-sc0000215-1510915933:228726..228803Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:228489..228581TCONS_00015688-exon-sc0000215-1510915933:228489..228581Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:228120..228185TCONS_00015688-exon-sc0000215-1510915933:228120..228185Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:227892..227939TCONS_00015688-exon-sc0000215-1510915933:227892..227939Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1510915933:226387..227769TCONS_00015688-exon-sc0000215-1510915933:226387..227769Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:229364..229773TCONS_00015688-exon-sc0000215-1491911889:229364..229773Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:229169..229229TCONS_00015688-exon-sc0000215-1491911889:229169..229229Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:228954..229014TCONS_00015688-exon-sc0000215-1491911889:228954..229014Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:228726..228803TCONS_00015688-exon-sc0000215-1491911889:228726..228803Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:228489..228581TCONS_00015688-exon-sc0000215-1491911889:228489..228581Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:228120..228185TCONS_00015688-exon-sc0000215-1491911889:228120..228185Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:227892..227939TCONS_00015688-exon-sc0000215-1491911889:227892..227939Clytia hemisphaericaexon
TCONS_00015688-exon-sc0000215-1491911889:226387..227769TCONS_00015688-exon-sc0000215-1491911889:226387..227769Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015688-proteinTCONS_00015688-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:226387..229773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3343	2.53695	1.10174	0.572423	21.627	15.1721	11.5462	12.418	9.36984	11.8293	10.9041	5.4946	7.59642	7.2859	11.4033	11.3471	8.11966	7.76025	9.79304	10.4261	4.91012	4.58828	7.96808	9.69601	6.63864	8.04139	22.8209	15.0459	21.9335	19.4048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR025662Sigma_54_int_dom_ATP-bd_1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00015688 vs. Swiss-Prot (Human)
Match: RAB13 (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.219e-53
Identity = 91/190 (47.89%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  293 KNYNSTFKVLVLGESGVGKTSIIRRFTEEQYQESYISTIGIDSRSKVVNIGDENVRLQIWDTAGQERFRTLTSAYYRGAMGIILVYDVTSEYSFSSITNWLETIVQNASKNVCKLLVGNKIDCEEDYKVISTEKGKERADDTGLQFFETSAKTGDKINEVFMEMGK--MINEAKRKKLEEAQEPNVDLLT 856
            K Y+  FK+L++G+SGVGKT +I RF E+ +  +YISTIGID + + V+I  + ++LQ+WDTAGQERF+T+T+AYYRGAMGIILVYD+T E SF +I NW+++I +NAS  V +LL+GNK D E   KV   E+  + A + G++FFETSAK+   ++E F  + +  ++    R+     + P+ DL T
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKV-QKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLKT 191
The following BLAST results are available for this feature:
BLAST of TCONS_00015688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB131.219e-5347.89Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
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