|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00009911-protein ID=TCONS_00009911-protein|Name=TCONS_00009911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MVDVIYPDNTPISSLTNRPYKGQIPKTWPNFVCSECNMALHTPIVAIQHF
NGRCIKSNKKHVKRDLSKTSTPTQQFNIEQNKTHQTTVKSKNIDDSNLDC
KVCNAALNGPSSAKEHYAGKKHAMAVQAILDEGGHVPDVPPEVKSIPYDK
SKFHCDVCNINLTSQAQYEQHIGGTKHKMIADGSHPSDFSNYKGKQTPSK
MDPPPLKPPPSSLHCNDCNMTMNSEDQYVQHMNSKRHRENTGLPVPPRPK
QKVTHPIPVPESLHCNDCNMTMNSEDQYVQHMNSKRHRENTSGGNYNPNQ
NRGIKRPAPGSDRGSGHGGGGRGVPRGLSRGATGSFSRGRGATRGGFQGS
DRGVPHGRGRGQSHNAGRGAGRGRGRGSSRGSPSISRGGGGGQSAEWWRD
DGPTPAKMQKENDTNFSEISNPKPWIRGGFNNMRGGRRGGPPSRGGGVIN
RLQMKKEKN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003604 | Matrin/U1-like-C_Znf_C2H2 |
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger | SMART | SM00451 | ZnF_U1_5 | coord: 210..244
e-value: 0.047
score: 22.8
coord: 95..129
e-value: 0.0062
score: 25.8
coord: 150..184
e-value: 1.5E-4
score: 31.1
coord: 260..294
e-value: 0.089
score: 20.6 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 98..122
e-value: 19.0
score: 10.8
coord: 213..237
e-value: 0.3
score: 20.1
coord: 153..177
e-value: 1.4
score: 17.9
coord: 263..287
e-value: 0.3
score: 20.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 265..287 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 215..237 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 135..179 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 260..291 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 91..129 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 191..240 |
| None | No IPR available | GENE3D | 4.10.1050.10 | | coord: 252..293
e-value: 1.8E-5
score: 24.5
coord: 56..132
e-value: 0.005
score: 16.7
coord: 145..183
e-value: 2.2E-5
score: 24.3
coord: 193..245
e-value: 8.6E-6
score: 25.6 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 153..177
e-value: 1.0E-6
score: 28.8
coord: 214..237
e-value: 1.5E-6
score: 28.3
coord: 264..287
e-value: 1.5E-6
score: 28.3
coord: 100..122
e-value: 2.2E-6
score: 27.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 230..256 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 181..209 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 280..459 |
Blast
The following BLAST results are available for this feature:
|
