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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009911 ID=TCONS_00009911|Name=TCONS_00009911|organism=Clytia hemisphaerica|type=transcript|length=2736bpRun BLAST on NCBI protein sequence of TCONS_00009911-protein >TCONS_00009911-protein ID=TCONS_00009911-protein|Name=TCONS_00009911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp MVDVIYPDNTPISSLTNRPYKGQIPKTWPNFVCSECNMALHTPIVAIQHFRun BLAST on NCBI transcript from alignment at sc0000100:342978..352684+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009911 ID=TCONS_00009911|Name=TCONS_00009911|organism=Clytia hemisphaerica|type=transcript|length=9707bp|location=Sequence derived from alignment at sc0000100:342978..352684+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:342978..352684+ >TCONS_00009911 ID=TCONS_00009911|Name=TCONS_00009911|organism=Clytia hemisphaerica|type=CDS|length=9660bp|location=Sequence derived from alignment at sc0000100:342978..352684+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009911 vs. Swiss-Prot (Human)
Match: COPT1 (High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.639e-23 Identity = 64/166 (38.55%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 2161 EMMMMQMYFVLG-KEVTILFKQWKTNTAAELFGSCFVLFVLGVLYEGLKVYRQRMLLQPNKHHLNEKLTENSESNGSHTNQVLITNPARKQSGSSIKTCRLNRFSGRHLLQTFLHMLQVFIGYLLMLAFMTYNVWVCIAVILGAGFGYFLFGVQPVIIS--SDHCN 2649
MMMM M F G K V +LF NTA E+ G+ +F+L + YEGLK+ R+ +L K ++ + N + + P + KT S HLLQT LH++QV I Y LML FMTYN ++CIAV GAG GYFLF + ++ ++HC+
Sbjct: 39 SMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLL---RKSQVSIRY-----------NSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH 190 The following BLAST results are available for this feature:
BLAST of TCONS_00009911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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