TCONS_00025827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025827
Unique NameTCONS_00025827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025827 ID=TCONS_00025827|Name=TCONS_00025827|organism=Clytia hemisphaerica|type=transcript|length=3232bp
TAGATGGACGTcaaaataacgttgtgtgccaccTGGGTTAAATCATGGAC
GTTTATGACTgaatttctgaattttatttAGTTTCTAGCAAAATCgaaag
aattaaaaatgaaaatcactGCAAAATTCATATTCAATGTTTACATTTAC
ACTGCATTTTGCTACAAAGTCACAAGTTCTTTGATTTCTTCAGTGCAGCA
CGAATGCTTCACTTTTATTCAAAAAGCAAAATCGTCAAACGAATTAAATT
TTGTTCGTTTATCATACAATCACACCTCAGGTTACCATTTTCAATCTAAC
ACAATTGATTATTCGCTGACGTCACTAACACGTGTCAAGGGAGAATCAAC
CAAGGAGGATTGTGGGATATGGATTGACAGTCATTATGATTTAATTCCAT
CTTTATTTAATACGTTGGAAACCAATGATTCACAGGAAATGGCCTTAACA
TACAATACGGAAACGATACCAGAACCAGAACCATCTCTGGCGATTCAGCT
GACCATTCAAACTATCCATGAACTAATTTTGAAACTTGAGACCAACACCA
TCTATATATTTTACGATCGTAATTTCAAAACACTTGTAACAGAGCTTAAG
CACCATGTCCAAATATCGCACGAGAGGactctatttttaaaagattatcT
CGTCGATATTGACTCCGTATCGGTAGCTTTGAAGCTAGCTTTCCAAGAGA
CTGTAAATCTAAACAAACGAGTTACCTATCTAGTTTTATGCAATGACTAT
ACTACAAATACTATGATGGTCAAAGCAAAAGATAGTAATATGCTGGTGTT
TGATATTATATGGATAACACAACTTCTTCGACATGTACCAGTACAGTTTG
ATCCCTTCTTTTATCTCAGCTTCCATGTCAATGGATATAGTGGAGATGCT
GGTATGATGGAGAATAATGTTTTCATGTTGGGTGATGTTTTGAGACAAGT
ATTAAAGAGagcaGAATTACCATCAAATATTGCTTATCAATTGGAGTCAA
AAACAATTTCCGAAATTTCTCTTTACACAAATTCAAAGTGGAACACAATA
TTTGAAATGCGTTCAAATTTAACAACAACAGAAATGCTACAACAAAAAAG
TTCAATAAATTATGAACTACACTCAACATTTTTAGGAACTACTCAACAAT
ANGTTCAAATTTAACAACAACAGAAATGCTACAACAAAAAAGTTCAATAA
ATTATGAACTACACTCAACATTTTTAGGAACTACTCAACAATATGTTGAA
GAGATATTGTTGAGAAACAAACCGATAAGAGTGGTATCGATTCCAGATGG
TCCTTTCCTATTTGTTGATCAATCGCATTACCTCAAAGATGGCGTTTGCA
TGGCAAATACTGTCATATGCAGACAAACACTACAAAATGAGTCCAACACT
ACACGTACTTCGCAAAACGAATCCAACACCGTATGGATAAACACTTGTTG
TTTTGGCTATACAGTGGATTTAATATCGAGCATTTCAAATTTACTGGATT
TGAAATTTGAGATTTACCTTGTTGAAGACAATAAATATGGAGGATATGAC
CCAGAACACGGTACATTTAACGGTTTAATTGGTGACATCATAAAGCGCAA
AGCTGACGTTGCTCTGGCCGGCTTAACTATCAACAGTCAACGTTCGAAAT
ATGTTGATTTCACAACACCCTTTATGAGAACAGAAATCGGAATCTTAACA
TTaaagaaaattgagaaaaataaaaattatttcaatatgGATTTCATAGC
AAATTTAGCTGAGGAGACTCAATATGCAATAATAGCGCTATATACGCTTT
CATTATTCATCTTATGTGGCATTGATAACTGTGCATTGTATTTCAAAGAC
CAGTTTGACCGGAAATACCGTAACCGCAGACATGAGATGTACCCTGTTGC
CGAGTGCTTTAGTTACATCTCTGGactatctttccaacgagatTTAGGTG
GAAAAAATCCTCGCTCCTTTGGTGGACGCGTGACGGCAATTTTCTTTGCA
TTTGGTATGGTGGCTGTGAGTACGGTTTATACAGCGTCACTGACAGCCAG
TAAGGTGGTGGTATCGCAACAAGCTGGTTTTAAAGGACTCAAAGATCCAA
GGTTTGTCAATCCAACAGAGGATTTCAAATTCGCCACCAATAAAGATACC
AGCATTGagacatttttcgaaaaatcaccAGATCCATCTTACCACAGAAT
GTATCTATTCATGAGGAAATATAACGTTGAAACCGTTGATGAAGGAATCA
ATAAAGTGCTCAATGGCCAACTCCAAGCATACCTTAACGAGTATACATTT
CTAAACTACATGATTCCGAAACTGGGTCAATGCAAAGTTGTTCTTCACAG
TAACACGGTTGGCGAATCGGGCTATGGAATGGCCGTTGGTAAAAACTCAT
ATCTTAAACATGTTCTTTCACAGGCTATATTAATTCTAAGTGAGAAAAAA
GAGTTGGCAAAGCTCGAGCAACGGTGGCTTTCGAATGTTTGCAAGACTGA
TGAAATTGACGCTAATGAGAAATTTTCGTTGAATTTTTTCGCTACACCTT
TCATGTTTATTGCTCTCTTCGCGTGCGTATGTGGATTAGGAGTATTAATT
GAAAGATATGCAGATGAATTTTTCGTAAAGAGGAAGttaaagaaagagaa
gaaagaacACGAAGAGAAAAATCTGGGTTATTTGAATACGAGTGCATGGA
CTTTTAATGATGTCAGAGAAGGTTATTTACGTTAACATTTGTGGTGACGT
GTAGACCCAGCGAACCGCGttgttgtatttcgctgcagcttACCCTTATT
TTGGCTTTCCAGACCAtccttccaagaaatatttataAGCGCTATTCCTG
CACTCCCGTGTCTTCGGAAAGGCAGACGCTTGTTTAAGTCTGTGATGTGA
TGTGGAAAGGAGAGTCATTCGAGCATTCTACAAATAAGGAACTTGATTTA
TCAGCCTTAAAATGGAAAGTAGCGCTCACATCTAAATTGTGTAATTGGCA
AAGCTATGAAGAAGAAACACAACATAAATGGTGCAAACGTcgtaacgttg
aaacaatgagTTAGTTAGAAATAGAACTTCCGTAGGTGACAAAATGAGAC
TATAGATTGTGGCGATCATATTTGCTGAAAATGAATGTTTATTATTTTTG
CACTCAAAGCTATTTTCACGCTCCATAACTTACAAACTGATGTGgtgtaa
aacttttttttaaatccattAAGCGTCCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00025827-protein

>TCONS_00025827-protein ID=TCONS_00025827-protein|Name=TCONS_00025827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MLQQKSSINYELHSTFLGTTQQYVEEILLRNKPIRVVSIPDGPFLFVDQS
HYLKDGVCMANTVICRQTLQNESNTTRTSQNESNTVWINTCCFGYTVDLI
SSISNLLDLKFEIYLVEDNKYGGYDPEHGTFNGLIGDIIKRKADVALAGL
TINSQRSKYVDFTTPFMRTEIGILTLKKIEKNKNYFNMDFIANLAEETQY
AIIALYTLSLFILCGIDNCALYFKDQFDRKYRNRRHEMYPVAECFSYISG
LSFQRDLGGKNPRSFGGRVTAIFFAFGMVAVSTVYTASLTASKVVVSQQA
GFKGLKDPRFVNPTEDFKFATNKDTSIETFFEKSPDPSYHRMYLFMRKYN
VETVDEGINKVLNGQLQAYLNEYTFLNYMIPKLGQCKVVLHSNTVGESGY
GMAVGKNSYLKHVLSQAILILSEKKELAKLEQRWLSNVCKTDEIDANEKF
SLNFFATPFMFIALFACVCGLGVLIERYADEFFVKRKLKKEKKEHEEKNL
GYLNTSAWTFNDVREGYLR
Run BLAST on NCBI

transcript from alignment at sc0000549:139111..146762+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025827 ID=TCONS_00025827|Name=TCONS_00025827|organism=Clytia hemisphaerica|type=transcript|length=7652bp|location=Sequence derived from alignment at sc0000549:139111..146762+ (Clytia hemisphaerica)
TAGATGGACGTcaaaataacgttgtgtgccaccTGGGTTAAATCATGGAC
GTTTATGACTgaatttctgaattttatttAGTTTCTAGCAAAATCgaaag
aattaaaaatgaaaatcactGCAAAATTCATATTCAATGTTTACATTTAC
ACTGCATTTTGCTACAAAGTCACAAGTTCTTTGATTTCTTCAGTGCAGCA
CGAATGCTTCACTTTTATTCAAAAAGCAAAATCGTCAAACGAATTAAATT
TTGTTCGTTTATCATACAATCACACCTCAGGTTACCATTTTCAATCTAAC
ACAATTGATTATTCGCTGACGTCACTAACACGTGTCAAGGGAGAATCAAC
CAAGGAGGATTGTGGGATATGGATTGACAGTCATTATGATTTAATTCCAT
CTTTATTTAATACGTTGGAAACCAATGATTCACAGGTTTGACATTATATC
ATGGTAATTGGTAATTTAGGACACATCAGTCAGCATAACTAAGTTATAAC
ACGTTCACTGCCCCTGCCGACCCCTCTTTCATGAGTCGAAAAATTGATCT
CTAACCCTCCGAGGCTTCTGTGGCCTGAGTTTTACTTCAAATATCTTCGA
ATCAAATATAACATCGACACCGGATTTCACGAAGATTTCAGAAATGCAGT
AAAAAAGCAAAGCAACAGTGTATTTTGACCCCTCTACCcggggaaggggg
ggggggtacttaggggAAATGGCTTCCAGGGATNTTTTCATGAGTCGAAA
AATTGATCTCTAACCCTCCGAGGCTTCTGTGGCCTGAGTTTTGCTTCAAA
TATCTTCGAATCGAATATAACAATCGACACAGGATTTCacgtaaatttca
aaaatgcagtAAAAAAGCAAAGCAAAAGTGTATTTTGACCCCTCTACCCG
GGGAAGGGGGGCTACTTAGGGGAAATAGCTTCCGGGTATATGCGACCCAT
AAGGgtcctttttcacaccctcgaaagtctctcaaatgggtacaaaaacc
attaaaaatcaatcaattgAGTCTTTGTAAGGGTTCCGAAGTTACGgaaa
taaaaaatctcaaaaggtgccaaaaatgccaaaaaaagtggacaaaattt
tcgaaattcagtttctCTAAgagtcgattttcgaactttgttCTGAAAAA
tccgtcatctcgcaaacctagtatcGCCCCTCTACTACGAATATACTTGC
AGTTGGCAGCGAACGTGTTAAACCATAAGAAAAAGCATATAAATAAGTTT
TGGGCTTGAAGCATATTCAAACATAATTGGGATATAAAGTTACCAAGACC
ACAGTACATTATCACACGACGTCTAAGGGAATGAACCTCTCTTTTAGTAA
AGAAGATcggatctattttttttttggttggcTTCTATTGAAACGAATCC
TAAAAGTATACTCCAACTTTTCTTGCAGGAAATGGCCTTAACATACAATA
CGGAAACGATACCAGAACCAGAACCATCTCTGGCGATTCAGCTGACCATT
CAAACTATCCATGAACTAATTTTGAAACTTGAGACCAACACCATCTATAT
ATTTTACGATCGTAATTTCAAAACACTTGTAACAGAGCTTAAGCACCATG
TCCAAATATCGCACGAGAGGactctatttttaaaagattatcTCGTCGAT
ATTGACTCCGTATCGGTAGCTTTGAAGCTAGCTTTCCAAGAGACTGTAAA
TCTAAACAAACGAGTTACCTATCTAGTTTTATGCAATGACTATACTACAA
ATACTATGATGGTCAAAGCAAAAGATAGTAATATGCTGGTGTTTGATATT
ATATGGATAACACAACTTCTTCGACATGTACCAGTACAGTTTGATCCCTT
CTTTTATCTCAGCTTCCATGTCAATGGATATAGTGGAGATGCTGGTATGA
TGGAGAATAATGTTTTCATGTTGGGTGATGTTTTGAGACAAGTATTAAAG
AGGTATGTATTTAATGTAGATCCTGGTGAAAACAATGTCAAACCaattta
atcggattaactttcgcgaaattaaatccaccgcaaaaaaaatttaaaat
gaattttcagCGGAGAAACCAGTTAAAAGTCTTCATTTGTGGTAAAAAGT
GgctatttttcagctgttttcatgCTTGTTCGCGAAGTTAAATCCAgata
atttcgcgatttttttcgctcgcgaaatttaatccgattagaATAACGTT
CAAAAtatatacagtagagtctctttaacttgaaCCTCCATTACTCAAGT
CACAACAAGATTTCTCgtccctttagttaacaatgcctcaTAAACCAATC
TCTATAACTGGAAATTTCctttaactcaaacaaatttgtatTCTCCGTGC
GTATTCGAGTTATCAAGACCCCATATATATaaagtagagtctctttaact
tgaaACTCCATTACTCAAGTGTATCCTAAACACAAACAAGTTTTCTAAGT
TTGAGACCCAACTGTATATAAAGAAAATTTGCGACCGCAGCGTCGAAGAC
GACATGAAGGtttctctttcgatagctatctccCCGAAGAGTAGGGGAGG
TCGCCACTATTTCTTCCCGGATTGCACCCTTGATCCTTCCTTTCTCATTC
TATCATGTTGATATTATACAATATTAGATGATATTTGAAGGGTGAAGCTG
GGATGGCCAAttgttaccttaagggaaccattttttgcgggaactaattt
ttgcggttcgcagttcaatatttaatatttaatatttgcgggaacttaat
tttgcggatttctcacttgaaagaaaattagagccgtactgtgaattatt
cgacctttgttttcgcatttgaaaattttgcgggaacttaattttacggt
ttgggcctaaatccacaaaaaccgcaaaatttagctcccgcaaaaattag
ttcccttaaggtatttagTGGCAAAATGTATCCGAAGTTCATTTAATTAT
AATGCTGATAATATATTCGTAACATTGTTCATCCGAATTAAATCTTTGGC
TACGTGAGAGAATATTGGGCTAAGAGAAACTagtatactttaggcgtaca
aactttcaaaggcaaaaactttcgcgaggtcaaaaaatcgcgaaatttac
gacatttacttttgcgagtttgagaaaaaaatgtttttcgcgagcataaa
ctttcgttggataaaaatgagaatttttgaatgaaaattgccataaaatt
gaaaaatctatCTTAAATTCGATAAAGACGGTTGCTCCTCTTCGACTTAA
AAAAAGACATCAAACTATAAAAACATgccgaaaatttgatatttattacg
attttgaggttttacagatttccaaatcttttgagaaattttcgcaagta
taaactttcgcaaattgccctgttaagaattttcaaagacatttactttc
gcgaaaaaggcaaaattcgcgaaaatcgcgaaagtttctgctagGCCTAA
AGTAGTTTTACAAATTTCTTTGTGACCATTTGTTTTGGAACAAAATCTTT
TACATCATCCCCCCCCCTCCAAGAACATTGTACTGTGCATttctacaccc
ctgtctcgcagccctggtggaacttttgtcctcagtggagataaaaattc
ctaATGAATCCTAATGGGgaaagaaattctattgttccaaggttaaaaaa
cccagtgggggTGGTTTTGGGGTGCAacttttaaacatggaatttcgagt
gggatGAAAAAGTCGATTTCCTAgtagggctgaaattcaagggtattttc
ccaccggggacgaaatttttcccagtgggacacaggggtgtatttcttcc
aaaaattttcttataattttaaataatcattttgtccttatttttatttt
tagagcaGAATTACCATCAAATATTGCTTATCAATTGGAGTCAAAAACAA
TTTCCGAAATTTCTCTTTACACAAATTCAAAGTGGAACACAATATTTGAA
ATGCGTTCAAATTTAACAACAACAGAAATGCTACAACAAAAAAGTTCAAT
AAATTATGAACTACACTCAACATTTTTAGGAACTACTCAACAATANGTTC
AAATTTAACAACAACAGAAATGCTACAACAAAAAAGTTCAATAAATTATG
AACTACACTCAACATTTTTAGGAACTACTCAACAATATGTTGAAGAGATA
TTGTTGAGAAACAAACCGATAAGAGTGGTATCGATTCCAGATGGTCCTTT
CCTATTTGTTGATCAATCGCATTACCTCAAAGATGGCGTTTGCATGGCAA
ATACTGTCATATGCAGACAAACACTACAAAATGAGTCCAACACTACACGT
ACTTCGCAAAACGAATCCAACACCGTATGGATAAACACTTGTTGTTTTGG
CTATACAGTGGATTTAATATCGAGCATTTCAAATTTACTGGATTTGAAAT
TTGAGATTTACCTTGTTGAAGACAATAAATATGGAGGATATGACCCAGAA
CACGGTACATTTAACGGTTTAATTGGTGACATCATAAAGCGCAAAGCTGA
CGTTGCTCTGGCCGGCTTAACTATCAACAGTCAACGTTCGAAATATGTTG
ATTTCACAACACCCTTTATGAGAACAGAAATCGGAATCTTAACATTaaag
aaaattgagaaaaataaaaattatttcaatatgGATTTCATAGCAAATTT
AGCTGAGGAGACTCAATATGCAATAATAGCGCTATATACGCTTTCATTAT
TCATCTTATGTGGCATTGATAACTGTGCATTGTATTTCAAAGACCAGTTT
GACCGGAAATACCGTAACCGCAGACATGAGATGTACCCTGTTGCCGAGTG
CTTTAGTTACATCTCTGGactatctttccaacgagatTTAGGTGGAAAAA
ATCCTCGCTCCTTTGGTGGACGCGTGACGGCAATTTTCTTTGCATTTGGT
ATGGTGGCTGTGAGTACGGTTTATACAGCGTCACTGACAGCCAGTAAGGT
GGTGGTATCGCAACAAGCTGGTTTTAAAGGACTCAAAGATCCAAGGGTAT
GTTATTTTTTGACTCGGCGTCATTCTCTATTGGGAAATAGATAGNGGTAT
CGCAACAAGCTGGTTTTAAAGGACTCAAAGATCCAAGGGTATGTTATTTT
TTGACTCGGCGTCATTCTCTATTGGGAAATAGATAGACGGTTGTACTAGT
CCACACttttagactagtaaaccacgtcgttgtatttcgctgcagattaa
acttgcaaTGGGATCTATGTCTATAATGTTCACTGAATTTCCAATCTCCC
Gcagcaatttctattttttataagaactctttattataagcactattccc
acGTTCCTGGTTTAACCAAATTTCGGATCTCTTTGCGATTGAACATATAT
CGATTTTATTAATGTAGTTTGTCAATCCAACAGAGGATTTCAAATTCGCC
ACCAATAAAGATACCAGCATTGagacatttttcgaaaaatcaccAGATCC
ATCTTACCACAGAATGTATCTATTCATGAGGAAATATAACGTTGAAACCG
TTGATGAAGGAATCAATAAAGTGCTCAATGGGTAAGAATCTGGCAATCTT
AGAAATAGTTCGTAACATTGGTGTTACACCATATGATGTATGTCGAAGGT
TGTAGAGTAGATTTCCTATGTAGGTTttaagccacttatttcctacaAAG
GGAGCCTCATTTTAGATCTGAAGTAACATTATCGccagaatttgaaaatt
ttttgccatCATCTGAAATGCGGCGCAAATTTTTAGGATTCACTTTTTCT
TGGTTAAGGGCAAGGTTGAAGATTcactctagccttcggcttgaaactca
atggctaCATCCTCTGCACATCTTCCATTGGAATAAGGCGGAAGCTCTTT
AGGTGTTTTCATAGAATAGGGCGTGTTAACCTCGCTCCAGCGTATTTCCG
GCTTTTAATGCTTATTGATAGCACACCTTTCTCAGGCTCTCaggaaagaa
aaagtgaaaatcctCTAAAATGTACAccgtattttttatgacggattgaa
tctagtgcTTTCTTTGTCTTCGAGTAGtacctttttaaaaatctagcggt
aaattttactGTCAATCCGGCATTTGTGTGAAGTTCGCGCCTCCTTTGGT
AGGATttattggcttcaaatcctaccaacgagattcacttctagcccttc
aggcttatacttcattgggggGGGACTCACAAGAGTGTCATCCATATCAG
TAACGCAAATAAAGCCTTGGATACACGGGGGCGAGTTTGGGAATTCTCCG
GAGTTCTTGTAGTTTTCTTTACTTTTATATGAGCTTCTAAACGCTACAAT
CAGTGACAAATTACTTGCCTCAAAAGGGAAATTCACCGGGAAGTTTTAAA
ACCACATTCGATTTGTAAGTGCTCTAAAGTAAGTTTAAAGGGTAGAGTTT
TAACTCTGAGTTTTAACGCTAGACTTAAGATCTGAAGATCAAAAGTTCAG
AAATGGTCCAGTAGGGCTTGAAATGTAGCCTAGCAACCAATAAATCCCTC
CCAGATCGAAATAATGGATGAAATCAAGTTGAAGGCCTGAAATTGACATT
CTCGCTCGAAATTCAATTTTCGAAAAATGGTAAATTAGCCAAAAGTACCA
ATATGTTATGGCACTGATTGTAGCTTTGACACTCTGAGATTCAAAGTTCC
TTCAAAAAACATTTTAAAATTTTTATATCATTTCAGCCAACTCCAAGCAT
ACCTTAACGAGTATACATTTCTAAACTACATGATTCCGAAACTGGGTCAA
TGCAAAGTTGTTCTTCACAGTAACACGGTTGGCGAATCGGGCTATGGAAT
GGCCGTTGGTAAAAACTCATATCTTAAACATGTTCTTTCACAGGCTATAT
TAATTCTAAGTGAGAAAAAAGAGTTGGCAAAGCTCGAGCAACGGTGGCTT
TCGAATGTTTGCAAGACTGATGAAATTGACGCTAATGAGAAATTTTCGTT
GAATTTTTTCGCTACACCTTTCATGTTTATTGCTCTCTTCGCGTGCGTAT
GTGGATTAGGAGTATTAATTGAAAGATATGCAGATGAATTTTTCGTAAAG
AGGAAGttaaagaaagagaagaaagaacACGAAGAGAAAAATCTGGGTTA
TTTGAATACGAGTGCATGGACTTTTAATGATGTCAGAGAAGGTTATTTAC
GTTAACATTTGTGGTGACGTGTAGACCCAGCGAACCGCGttgttgtattt
cgctgcagcttACCCTTATTTTGGCTTTCCAGACCAtccttccaagaaat
atttataAGCGCTATTCCTGCACTCCCGTGTCTTCGGAAAGGCAGACGCT
TGTTTAAGTCTGTGATGTGATGTGGAAAGGAGAGTCATTCGAGCATTCTA
CAAATAAGGAACTTGATTTATCAGCCTTAAAATGGAAAGTAGCGCTCACA
TCTAAATTGTGTAATTGGCAAAGCTATGAAGAAGAAACACAACATAAATG
GTGCAAACGTcgtaacgttgaaacaatgagTTAGTTAGAAATAGAACTTC
CGTAGGTGACAAAATGAGACTATAGATTGTGGCGATCATATTTGCTGAAA
ATGAATGTTTATTATTTTTGCACTCAAAGCTATTTTCACGCTCCATAACT
TACAAACTGATGTGgtgtaaaacttttttttaaatccattAAGCGTCCAA
AC

Coding sequence (CDS) from alignment at sc0000549:139111..146762+

>TCONS_00025827 ID=TCONS_00025827|Name=TCONS_00025827|organism=Clytia hemisphaerica|type=CDS|length=6240bp|location=Sequence derived from alignment at sc0000549:139111..146762+ (Clytia hemisphaerica)
ATGCTACAACAAAAAAGTTCAATAAATTATGAACTACACTCAACATTTTT
AGGAACTACTCAACAATATGTTGAAGAGATATTGTTGAGAAACAAACCGA
TAAGAGTGGTATCGATTCCAGATGGTCCTTTCCTATTTGTTGATCAATCG
CATTACCTCAAAGATGGCGTTTGCATGGCAAATACTGTCATATGCAGACA
AACACTACAAAATGAGTCCAACACTACACGTACTTCGCAAAACGAATCCA
ACACCGTATGGATAAACACTTGTTGTTTTGGCTATACAGTGGATTTAATA
TCGAGCATTTCAAATTTACTGGATTTGAAATTTGAGATTTACCTTGTTGA
AGACAATAAATATGGAGGATATGACCCAGAACACGGTACATTTAACGGTT
TAATTGGTGACATCATAAAGCGCAAAGCTGACGTTGCTCTGGCCGGCTTA
ACTATCAACAGTCAACGTTCGAAATATGTTGATTTCACAACACCCTTTAT
GAGAACAGAAATCGGAATCTTAACATTaaagaaaattgagaaaaataaaa
attatttcaatatgGATTTCATAGCAAATTTAGCTGAGGAGACTCAATAT
GCAATAATAGCGCTATATACGCTTTCATTATTCATCTTATGTGGCATTGA
TAACTGTGCATTGTATTTCAAAGACCAGTTTGACCGGAAATACCGTAACC
GCAGACATGAGATGTACCCTGTTGCCGAGTGCTTTAGTTACATCTCTGGa
ctatctttccaacgagatTTAGGTGGAAAAAATCCTCGCTCCTTTGGTGG
ACGCGTGACGGCAATTTTCTTTGCATTTGGTATGGTGGCTGTGAGTACGG
TTTATACAGCGTCACTGACAGCCAGTAAGGTGGTGGTATCGCAACAAGCT
GGTTTTAAAGGACTCAAAGATCCAAGGTTTGTCAATCCAACAGAGGATTT
CAAATTCGCCACCAATAAAGATACCAGCATTGagacatttttcgaaaaat
caccAGATCCATCTTACCACAGAATGTATCTATTCATGAGGAAATATAAC
GTTGAAACCGTTGATGAAGGAATCAATAAAGTGCTCAATGGCCAACTCCA
AGCATACCTTAACGAGTATACATTTCTAAACTACATGATTCCGAAACTGG
GTCAATGCAAAGTTGTTCTTCACAGTAACACGGTTGGCGAATCGGGCTAT
GGAATGGCCGTTGGTAAAAACTCATATCTTAAACATGTTCTTTCACAGGC
TATATTAATTCTAAGTGAGAAAAAAGAGTTGGCAAAGCTCGAGCAACGGT
GGCTTTCGAATGTTTGCAAGACTGATGAAATTGACGCTAATGAGAAATTT
TCGTTGAATTTTTTCGCTACACCTTTCATGTTTATTGCTCTCTTCGCGTG
CGTATGTGGATTAGGAGTATTAATTGAAAGATATGCAGATGAATTTTTCG
TAAAGAGGAAGttaaagaaagagaagaaagaacACGAAGAGAAAAATCTG
GGTTATTTGAATACGAGTGCATGGACTTTTAATGATGTCAGAGAAGGTTA
TTTACGTTAAATGCTACAACAAAAAAGTTCAATAAATTATGAACTACACT
CAACATTTTTAGGAACTACTCAACAATATGTTGAAGAGATATTGTTGAGA
AACAAACCGATAAGAGTGGTATCGATTCCAGATGGTCCTTTCCTATTTGT
TGATCAATCGCATTACCTCAAAGATGGCGTTTGCATGGCAAATACTGTCA
TATGCAGACAAACACTACAAAATGAGTCCAACACTACACGTACTTCGCAA
AACGAATCCAACACCGTATGGATAAACACTTGTTGTTTTGGCTATACAGT
GGATTTAATATCGAGCATTTCAAATTTACTGGATTTGAAATTTGAGATTT
ACCTTGTTGAAGACAATAAATATGGAGGATATGACCCAGAACACGGTACA
TTTAACGGTTTAATTGGTGACATCATAAAGCGCAAAGCTGACGTTGCTCT
GGCCGGCTTAACTATCAACAGTCAACGTTCGAAATATGTTGATTTCACAA
CACCCTTTATGAGAACAGAAATCGGAATCTTAACATTaaagaaaattgag
aaaaataaaaattatttcaatatgGATTTCATAGCAAATTTAGCTGAGGA
GACTCAATATGCAATAATAGCGCTATATACGCTTTCATTATTCATCTTAT
GTGGCATTGATAACTGTGCATTGTATTTCAAAGACCAGTTTGACCGGAAA
TACCGTAACCGCAGACATGAGATGTACCCTGTTGCCGAGTGCTTTAGTTA
CATCTCTGGactatctttccaacgagatTTAGGTGGAAAAAATCCTCGCT
CCTTTGGTGGACGCGTGACGGCAATTTTCTTTGCATTTGGTATGGTGGCT
GTGAGTACGGTTTATACAGCGTCACTGACAGCCAGTAAGGTGGTGGTATC
GCAACAAGCTGGTTTTAAAGGACTCAAAGATCCAAGGTTTGTCAATCCAA
CAGAGGATTTCAAATTCGCCACCAATAAAGATACCAGCATTGagacattt
ttcgaaaaatcaccAGATCCATCTTACCACAGAATGTATCTATTCATGAG
GAAATATAACGTTGAAACCGTTGATGAAGGAATCAATAAAGTGCTCAATG
GCCAACTCCAAGCATACCTTAACGAGTATACATTTCTAAACTACATGATT
CCGAAACTGGGTCAATGCAAAGTTGTTCTTCACAGTAACACGGTTGGCGA
ATCGGGCTATGGAATGGCCGTTGGTAAAAACTCATATCTTAAACATGTTC
TTTCACAGGCTATATTAATTCTAAGTGAGAAAAAAGAGTTGGCAAAGCTC
GAGCAACGGTGGCTTTCGAATGTTTGCAAGACTGATGAAATTGACGCTAA
TGAGAAATTTTCGTTGAATTTTTTCGCTACACCTTTCATGTTTATTGCTC
TCTTCGCGTGCGTATGTGGATTAGGAGTATTAATTGAAAGATATGCAGAT
GAATTTTTCGTAAAGAGGAAGttaaagaaagagaagaaagaacACGAAGA
GAAAAATCTGGGTTATTTGAATACGAGTGCATGGACTTTTAATGATGTCA
GAGAAGGTTATTTACGTTAAATGCTACAACAAAAAAGTTCAATAAATTAT
GAACTACACTCAACATTTTTAGGAACTACTCAACAATATGTTGAAGAGAT
ATTGTTGAGAAACAAACCGATAAGAGTGGTATCGATTCCAGATGGTCCTT
TCCTATTTGTTGATCAATCGCATTACCTCAAAGATGGCGTTTGCATGGCA
AATACTGTCATATGCAGACAAACACTACAAAATGAGTCCAACACTACACG
TACTTCGCAAAACGAATCCAACACCGTATGGATAAACACTTGTTGTTTTG
GCTATACAGTGGATTTAATATCGAGCATTTCAAATTTACTGGATTTGAAA
TTTGAGATTTACCTTGTTGAAGACAATAAATATGGAGGATATGACCCAGA
ACACGGTACATTTAACGGTTTAATTGGTGACATCATAAAGCGCAAAGCTG
ACGTTGCTCTGGCCGGCTTAACTATCAACAGTCAACGTTCGAAATATGTT
GATTTCACAACACCCTTTATGAGAACAGAAATCGGAATCTTAACATTaaa
gaaaattgagaaaaataaaaattatttcaatatgGATTTCATAGCAAATT
TAGCTGAGGAGACTCAATATGCAATAATAGCGCTATATACGCTTTCATTA
TTCATCTTATGTGGCATTGATAACTGTGCATTGTATTTCAAAGACCAGTT
TGACCGGAAATACCGTAACCGCAGACATGAGATGTACCCTGTTGCCGAGT
GCTTTAGTTACATCTCTGGactatctttccaacgagatTTAGGTGGAAAA
AATCCTCGCTCCTTTGGTGGACGCGTGACGGCAATTTTCTTTGCATTTGG
TATGGTGGCTGTGAGTACGGTTTATACAGCGTCACTGACAGCCAGTAAGG
TGGTGGTATCGCAACAAGCTGGTTTTAAAGGACTCAAAGATCCAAGGTTT
GTCAATCCAACAGAGGATTTCAAATTCGCCACCAATAAAGATACCAGCAT
TGagacatttttcgaaaaatcaccAGATCCATCTTACCACAGAATGTATC
TATTCATGAGGAAATATAACGTTGAAACCGTTGATGAAGGAATCAATAAA
GTGCTCAATGGCCAACTCCAAGCATACCTTAACGAGTATACATTTCTAAA
CTACATGATTCCGAAACTGGGTCAATGCAAAGTTGTTCTTCACAGTAACA
CGGTTGGCGAATCGGGCTATGGAATGGCCGTTGGTAAAAACTCATATCTT
AAACATGTTCTTTCACAGGCTATATTAATTCTAAGTGAGAAAAAAGAGTT
GGCAAAGCTCGAGCAACGGTGGCTTTCGAATGTTTGCAAGACTGATGAAA
TTGACGCTAATGAGAAATTTTCGTTGAATTTTTTCGCTACACCTTTCATG
TTTATTGCTCTCTTCGCGTGCGTATGTGGATTAGGAGTATTAATTGAAAG
ATATGCAGATGAATTTTTCGTAAAGAGGAAGttaaagaaagagaagaaag
aacACGAAGAGAAAAATCTGGGTTATTTGAATACGAGTGCATGGACTTTT
AATGATGTCAGAGAAGGTTATTTACGTTAAATGCTACAACAAAAAAGTTC
AATAAATTATGAACTACACTCAACATTTTTAGGAACTACTCAACAATATG
TTGAAGAGATATTGTTGAGAAACAAACCGATAAGAGTGGTATCGATTCCA
GATGGTCCTTTCCTATTTGTTGATCAATCGCATTACCTCAAAGATGGCGT
TTGCATGGCAAATACTGTCATATGCAGACAAACACTACAAAATGAGTCCA
ACACTACACGTACTTCGCAAAACGAATCCAACACCGTATGGATAAACACT
TGTTGTTTTGGCTATACAGTGGATTTAATATCGAGCATTTCAAATTTACT
GGATTTGAAATTTGAGATTTACCTTGTTGAAGACAATAAATATGGAGGAT
ATGACCCAGAACACGGTACATTTAACGGTTTAATTGGTGACATCATAAAG
CGCAAAGCTGACGTTGCTCTGGCCGGCTTAACTATCAACAGTCAACGTTC
GAAATATGTTGATTTCACAACACCCTTTATGAGAACAGAAATCGGAATCT
TAACATTaaagaaaattgagaaaaataaaaattatttcaatatgGATTTC
ATAGCAAATTTAGCTGAGGAGACTCAATATGCAATAATAGCGCTATATAC
GCTTTCATTATTCATCTTATGTGGCATTGATAACTGTGCATTGTATTTCA
AAGACCAGTTTGACCGGAAATACCGTAACCGCAGACATGAGATGTACCCT
GTTGCCGAGTGCTTTAGTTACATCTCTGGactatctttccaacgagatTT
AGGTGGAAAAAATCCTCGCTCCTTTGGTGGACGCGTGACGGCAATTTTCT
TTGCATTTGGTATGGTGGCTGTGAGTACGGTTTATACAGCGTCACTGACA
GCCAGTAAGGTGGTGGTATCGCAACAAGCTGGTTTTAAAGGACTCAAAGA
TCCAAGGTTTGTCAATCCAACAGAGGATTTCAAATTCGCCACCAATAAAG
ATACCAGCATTGagacatttttcgaaaaatcaccAGATCCATCTTACCAC
AGAATGTATCTATTCATGAGGAAATATAACGTTGAAACCGTTGATGAAGG
AATCAATAAAGTGCTCAATGGCCAACTCCAAGCATACCTTAACGAGTATA
CATTTCTAAACTACATGATTCCGAAACTGGGTCAATGCAAAGTTGTTCTT
CACAGTAACACGGTTGGCGAATCGGGCTATGGAATGGCCGTTGGTAAAAA
CTCATATCTTAAACATGTTCTTTCACAGGCTATATTAATTCTAAGTGAGA
AAAAAGAGTTGGCAAAGCTCGAGCAACGGTGGCTTTCGAATGTTTGCAAG
ACTGATGAAATTGACGCTAATGAGAAATTTTCGTTGAATTTTTTCGCTAC
ACCTTTCATGTTTATTGCTCTCTTCGCGTGCGTATGTGGATTAGGAGTAT
TAATTGAAAGATATGCAGATGAATTTTTCGTAAAGAGGAAGttaaagaaa
gagaagaaagaacACGAAGAGAAAAATCTGGGTTATTTGAATACGAGTGC
ATGGACTTTTAATGATGTCAGAGAAGGTTATTTACGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014517XLOC_014517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025827-exon-sc0000549-1491911889:139111..139545TCONS_00025827-exon-sc0000549-1491911889:139111..139545Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:139111..139545TCONS_00025827-exon-sc0000549-1510915933:139111..139545Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:139111..139545TCONS_00025827-exon-sc0000549-1575043694:139111..139545Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1491911889:140539..141062TCONS_00025827-exon-sc0000549-1491911889:140539..141062Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:140539..141062TCONS_00025827-exon-sc0000549-1510915933:140539..141062Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:140539..141062TCONS_00025827-exon-sc0000549-1575043694:140539..141062Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1491911889:142964..144064TCONS_00025827-exon-sc0000549-1491911889:142964..144064Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:142964..144064TCONS_00025827-exon-sc0000549-1510915933:142964..144064Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:142964..144064TCONS_00025827-exon-sc0000549-1575043694:142964..144064Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1491911889:144157..144198TCONS_00025827-exon-sc0000549-1491911889:144157..144198Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:144157..144198TCONS_00025827-exon-sc0000549-1510915933:144157..144198Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:144157..144198TCONS_00025827-exon-sc0000549-1575043694:144157..144198Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1491911889:144478..144641TCONS_00025827-exon-sc0000549-1491911889:144478..144641Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:144478..144641TCONS_00025827-exon-sc0000549-1510915933:144478..144641Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:144478..144641TCONS_00025827-exon-sc0000549-1575043694:144478..144641Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1491911889:145797..146762TCONS_00025827-exon-sc0000549-1491911889:145797..146762Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1510915933:145797..146762TCONS_00025827-exon-sc0000549-1510915933:145797..146762Clytia hemisphaericaexon
TCONS_00025827-exon-sc0000549-1575043694:145797..146762TCONS_00025827-exon-sc0000549-1575043694:145797..146762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025827-proteinTCONS_00025827-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:139111..146762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0176039	0.0171666	0.00664402	0.00650013	0.055393	0.0250127	0.173517	0.310763	0.395586	0.238874	0.196186	0.265746	0.202935	0.170221	0.0199922	0.00357578	0.207038	0.221237	0.349316	0.685376	0.805635	0.672461	0.316221	0.630032	0.648918	1.0627	0.0643692	0.0343483	0.00651299	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00025827 vs. Swiss-Prot (Human)
Match: NMDE2 (Glutamate receptor ionotropic, NMDA 2B OS=Homo sapiens GN=GRIN2B PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 5.934e-38
Identity = 119/458 (25.98%), Postives = 217/458 (47.38%), Query Frame = 3 
Query: 1275 IRVVSIPDGPFLFVDQSHYLKDGVCMANTVICRQTLQNESNTTRTSQNESNTVWINTCCFGYTVXXXXXXXXXXXXKFEIYLVEDNKYGGYDPEHGTFNGLIGDIIKRKADVALAGLTINSQRSKYVDFTTPFMRTEIGILTLKK---------IEK-NKNYFNMDFIANLAEETQYAIIALYTLSLFILCGIDNCALYFKDQFDRKYRNRRHEMYPVAECFSYISGLSFQRDLGGKNPRSFGGRVTAIFFAFGMVAVSTVYTASLTASKVVVSQQAGFKGLKDPRFVNPTE---DFKFATNKDTSIETFFEKSPDPSYHRMYLFMRKYNVETVDEGINKVLNGQLQAYLNEYTFLNYMIPKLGQCKVV-LHSNTV-GESGYGMAVGKNSYLKHVLSQAILILSEKKELAKLEQRWLSNVCK-------TDEIDANEKFSLNFFATPFMFIALFACVC 2582
            + +V++ + PF+ V+    L  G CM NTV C++ +  E+ T      +    +I  CC G+ +D++  IS  +   +++YLV + K+G     +GT+NG+IG+++ ++A +A+  LTIN +RS+ VDF+ PF+ T I ++  +          +E  + + + M F+  L      + +A++    F   G + C            R      + + +    + GL F   +  +NP+    ++    +AF  V     YTA+L A  +         GL D +F  P +    F+F T  + S E         +Y  M+ +M K+N   VD+ +  +  G+L A++ +   LNYM  +   CK+V + S  V   +GYG+A+ K+S  K  +  AIL L    E+ +LE  WL+ +C        + ++D +    + +     M ++L   +C
Sbjct:  406 LSIVTLEEAPFVIVESVDPLS-GTCMRNTVPCQKRIVTENKT------DEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHG--KKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLI----VSAVAVFVFEYFSPVGYNRCLA--------DGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRN----NYAEMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFIC 838
The following BLAST results are available for this feature:
BLAST of TCONS_00025827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE25.934e-3825.98Glutamate receptor ionotropic, NMDA 2B OS=Homo sap... [more]
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