TCONS_00025827-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00025827-protein
Unique Name	TCONS_00025827-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	519

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00025827-protein ID=TCONS_00025827-protein|Name=TCONS_00025827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MLQQKSSINYELHSTFLGTTQQYVEEILLRNKPIRVVSIPDGPFLFVDQS
HYLKDGVCMANTVICRQTLQNESNTTRTSQNESNTVWINTCCFGYTVDLI
SSISNLLDLKFEIYLVEDNKYGGYDPEHGTFNGLIGDIIKRKADVALAGL
TINSQRSKYVDFTTPFMRTEIGILTLKKIEKNKNYFNMDFIANLAEETQY
AIIALYTLSLFILCGIDNCALYFKDQFDRKYRNRRHEMYPVAECFSYISG
LSFQRDLGGKNPRSFGGRVTAIFFAFGMVAVSTVYTASLTASKVVVSQQA
GFKGLKDPRFVNPTEDFKFATNKDTSIETFFEKSPDPSYHRMYLFMRKYN
VETVDEGINKVLNGQLQAYLNEYTFLNYMIPKLGQCKVVLHSNTVGESGY
GMAVGKNSYLKHVLSQAILILSEKKELAKLEQRWLSNVCKTDEIDANEKF
SLNFFATPFMFIALFACVCGLGVLIERYADEFFVKRKLKKEKKEHEEKNL
GYLNTSAWTFNDVREGYLR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_014517	XLOC_014517	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00025827	TCONS_00025827	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001320	Iontro_rcpt
IPR019594	Glu/Gly-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0004970	ionotropic glutamate receptor activity
GO:0005234	extracellular-glutamate-gated ion channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005234	extracellular-glutamate-gated ion channel activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 485..505
None	No IPR available	GENE3D	3.40.190.10		coord: 29..205 e-value: 2.3E-26 score: 91.9
None	No IPR available	GENE3D	3.40.190.10		coord: 286..401 e-value: 1.7E-18 score: 66.6
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 31..52 coord: 85..178 coord: 298..436
IPR001320	Ionotropic glutamate receptor	SMART	SM00079	GluR_14	coord: 76..437 e-value: 2.4E-30 score: 116.8
IPR001320	Ionotropic glutamate receptor	PFAM	PF00060	Lig_chan	coord: 204..464 e-value: 4.3E-8 score: 33.0
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	SMART	SM00918	Lig_chan_Glu_bd_2	coord: 79..140 e-value: 2.4E-11 score: 53.7
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	PFAM	PF10613	Lig_chan-Glu_bd	coord: 89..177 e-value: 2.1E-27 score: 95.5

Blast

[Close]

BLAST of TCONS_00025827-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.329e-44
Identity = 132/487 (27.10%), Postives = 233/487 (47.84%), Query Frame = 0

Query:   34 IRVVSIPDGPFLFVDQSHYLKDGVCMANTVICRQTLQNESNTTRT------SQNESNTVWINTCCFGYTVDLISSISNLLDLKFEIYLVEDNKYGGYDPEHGTFNGLIGDIIKRKADVALAGLTINSQRSKYVDFTTPFMRTEIGILTLKKIEKNKNYFNMDFIANLAEETQYAI-IALYTLSLFILCGIDNCALY-FKDQFDRKYRNR-RHEMYPVAECFSYISGLSFQRDLGGKNPRSFGGRVTAIFFA-FGMVAVSTVYTASLTASKVVVSQQAGFKGLKDPRFVNPTEDFKFATNKDTSIETFFEKSPDPSYHRMYLFMRKYNVETVDEGINKVLNG--QLQAYLNEYTFLNYMIPKLGQCKVVLHSNTVGESGYGMAVGKNSYLKHVLSQAILILSEKKELAKLEQRWLSNV-CKTDEIDANEKFSLNFFATPFMFIALFACVC-GLGVLIERYADEFFVKRKLKKEKKEHEEKNLGYLNTS 506
            +RVV++ + PF+F  +     +G+C A   +C   + N+S+T  +      S N++  +    CC+GY +DL+  I+  ++  F++Y+V D KYG +  ++G + GL+GD+++  A +A+   +IN+ RS+ +DFT+PF  T +GIL      ++       F+  L       I +AL+  ++F+        LY +K  F    + R R +++  +   +    L F R +  K P+ + GR     +A F M  +ST YTA+L A  V         G+ DP+  +P++ F+F T +++S E +  +    S+  M+ +MR+YNV    +G+  + N   +L A++ +   L+Y +     CK++         GYG+ +  NS L   +S+ I        +  L  +W   V C        E   +        F  LF  +C G G+ I     E  V R L    K ++ K   +L+TS
Sbjct:  515 LRVVTLIEHPFVFTREVD--DEGLCPAGQ-LCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRT---RDTAAPIGAFMWPLHWTMWLGIFVALHITAVFL-------TLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLST-YTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQ----SFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKH----FSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIK-NKSKLQYWLHTS 976

The following BLAST results are available for this feature:

BLAST of TCONS_00025827-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00025827-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NMD3A	1.329e-44	27.10	Glutamate receptor ionotropic, NMDA 3A OS=Homo sap...	[more]

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TCONS_00025827-protein (polypeptide) - C. hemisphaerica