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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025718 ID=TCONS_00025718|Name=TCONS_00025718|organism=Clytia hemisphaerica|type=transcript|length=5157bpRun BLAST on NCBI protein sequence of TCONS_00025718-protein >TCONS_00025718-protein ID=TCONS_00025718-protein|Name=TCONS_00025718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=940bp MSTFLQIPLKKTTAVDFVKPLSSYIKNTFSGEILNENKDSLAELNQLRSNRun BLAST on NCBI transcript from alignment at sc0000543:201667..213328- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025718 ID=TCONS_00025718|Name=TCONS_00025718|organism=Clytia hemisphaerica|type=transcript|length=11662bp|location=Sequence derived from alignment at sc0000543:201667..213328- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000543:201667..213328- >TCONS_00025718 ID=TCONS_00025718|Name=TCONS_00025718|organism=Clytia hemisphaerica|type=CDS|length=39522bp|location=Sequence derived from alignment at sc0000543:201667..213328- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025718 vs. Swiss-Prot (Human)
Match: PDC6I (Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1) HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0 Identity = 326/733 (44.47%), Postives = 479/733 (65.35%), Query Frame = 1
Query: 319 MSTFLQIPLKKTTAVDFVKPLSSYIKNTF--SGEILNENKDSLAELNQLRSNAVVKSLDKHETSLETLQRYYDQLVTMEAKLPITEDQNRVSFTWYDAFDKGSIFG-STKSQLSSGAYERFCTLFNVGGLLSQLGSTQNQTNDDGLKTAAKYFQRAAGIFTFLKDNVYPVLQTLPTPDLSVSCLTALNSIMLAQAQDCFYMKATADKMXXXXXXXXXXXXXXFYQEAYRSVTNYEVKGLWDKEWLTHLQCKQGYFIAASEYHQSQVNAAAGAYGEQVGRLQKADKQCSDALKAAGQTAPSELKSLSASIKKIYTTAKKDNELIYLASVPSSDSLTAIGRASLSKPLPVSSPMSSNFVDLFNKLVPMQVHQAMSAYDSNKANIINQEIGKLREATQFLNGILASLNLPAAIEDLTGNTVPPSVLEKAKQLKDKGGLSSIDNMMQNLPDLLQRNQEVIDETFRMLDTEEGDDTQMREHFKDRWNRTPSNKLTQQLRDEGNKYKAILSNATGADGIVKEKYNTHRRGMEILSKSDSDIAASLPKGSTSASSAGNAHVQQLQELMRQVEQTKKERTTLEDEFKGATVDMQSKFLQALAAEGFLDNERIINTNLDEIYGPLRTQVAEIVQNQQSLIEQIQAANTAFNDSKHG--QTNQRDQMLKDLAAAFDAYVELSANLQEGSKFYNDLTNIMLKFQSKVTDFVFARKTEKDDLSKDLQQQAAKGTSAPTPSVPSHH 2502
M+TF+ + LKKT+ VD KPL +I+ T+ GE + + EL++LR AV + LDKHE +LETL RYYDQ+ ++E K P +E+Q ++FTW DAFDKGS+FG S K L+S YE+ C LFN L SQ+ + QN ND+GLK AAK++Q A+G F +K+ V L PT D+S + L+ IMLAQAQ+ F++KAT DKMKDAIIAK+A QAAD++ +A++ + K KE L K A +EYHQS + +GE++ RLQ A + + +K S I + AKKDN+ IY VP L IG+A+L K PV+ P+S F DLF K+VP+ V Q+++AY+ KA+++N+ I ++REAT NG+LASLNLPAAIED++G+TVP S+L K++ + ++GG+ ++D +++ LP+LLQRN+E++DE+ R+LD EE D +R FK+RW RTPSN+L + LR EG ++ +L A ADG VKE Y +HR + +L K + ++ A++P + + + G+ V L+ L+ +++ KKER LE++ K DM SKFL ALA +G ++ E + T LD +YG L T+V E ++ Q+ L++ IQ ++ F+ K + N R+++LK+LA A+D +VEL ANL+EG+KFYN+LT I+++FQ+K +D VFARKTE+D+L KDLQQ A+ SAP+ P++
Sbjct: 1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQC---QYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV--NVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQ 728 The following BLAST results are available for this feature:
BLAST of TCONS_00025718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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