TCONS_00025718-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025718-protein
Unique NameTCONS_00025718-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025718-protein ID=TCONS_00025718-protein|Name=TCONS_00025718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=940bp
MSTFLQIPLKKTTAVDFVKPLSSYIKNTFSGEILNENKDSLAELNQLRSN
AVVKSLDKHETSLETLQRYYDQLVTMEAKLPITEDQNRVSFTWYDAFDKG
SIFGSTKSQLSSGAYERFCTLFNVGGLLSQLGSTQNQTNDDGLKTAAKYF
QRAAGIFTFLKDNVYPVLQTLPTPDLSVSCLTALNSIMLAQAQDCFYMKA
TADKMKDAIIAKVAAQAADFYQEAYRSVTNYEVKGLWDKEWLTHLQCKQG
YFIAASEYHQSQVNAAAGAYGEQVGRLQKADKQCSDALKAAGQTAPSELK
SLSASIKKIYTTAKKDNELIYLASVPSSDSLTAIGRASLSKPLPVSSPMS
SNFVDLFNKLVPMQVHQAMSAYDSNKANIINQEIGKLREATQFLNGILAS
LNLPAAIEDLTGNTVPPSVLEKAKQLKDKGGLSSIDNMMQNLPDLLQRNQ
EVIDETFRMLDTEEGDDTQMREHFKDRWNRTPSNKLTQQLRDEGNKYKAI
LSNATGADGIVKEKYNTHRRGMEILSKSDSDIAASLPKGSTSASSAGNAH
VQQLQELMRQVEQTKKERTTLEDEFKGATVDMQSKFLQALAAEGFLDNER
IINTNLDEIYGPLRTQVAEIVQNQQSLIEQIQAANTAFNDSKHGQTNQRD
QMLKDLAAAFDAYVELSANLQEGSKFYNDLTNIMLKFQSKVTDFVFARKT
EKDDLSKDLQQQAAKGTSAPTPSVPSHHQAPPPRQAPERPPPPQQTPSQY
TQPPPQQQQQQPTPVPXQSAHPLHNRHLHNTHSHHPSNNLHLYLDHDLLQ
DQVPLLNSNHLHPVCPTLLLQTSCHKQDTMPLLPVAILHTCHHNPTYLAT
VKFHLRTTHLNMEDSNHLLIPTNSKVATHSRVISSHSRVISSHLTDTGNN
LQWDTEVTHNNSNNHLANKVKNNAVVELISYDLTLHNCFN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014441XLOC_014441Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025718TCONS_00025718Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004328BRO1_dom
IPR025304ALIX_V_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 435..455
NoneNo IPR availableCOILSCoilCoilcoord: 547..574
NoneNo IPR availableGENE3D1.20.140.50coord: 545..697
e-value: 1.6E-26
score: 92.6
NoneNo IPR availableGENE3D1.20.120.560coord: 361..507
e-value: 5.6E-27
score: 94.5
NoneNo IPR availableGENE3D1.25.40.280coord: 1..360
e-value: 1.2E-102
score: 343.1
NoneNo IPR availableCDDcd09235V_Alixcoord: 362..698
e-value: 0.0
score: 530.312
IPR004328BRO1 domainSMARTSM01041BRO1_2coord: 3..384
e-value: 1.0E-139
score: 480.2
IPR004328BRO1 domainPFAMPF03097BRO1coord: 4..380
e-value: 6.7E-120
score: 400.4
IPR004328BRO1 domainPROSITEPS51180BRO1coord: 3..394
score: 65.646
IPR025304ALIX V-shaped domainPFAMPF13949ALIX_LYPXL_bndcoord: 415..701
e-value: 2.1E-83
score: 279.9

Blast
[Close]
BLAST of TCONS_00025718-protein vs. Swiss-Prot (Human)
Match: PDC6I (Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1)

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 328/736 (44.57%), Postives = 482/736 (65.49%), Query Frame = 0 
Query:    1 MSTFLQIPLKKTTAVDFVKPLSSYIKNTF--SGEILNENKDSLAELNQLRSNAVVKSLDKHETSLETLQRYYDQLVTMEAKLPITEDQNRVSFTWYDAFDKGSIFG-STKSQLSSGAYERFCTLFNVGGLLSQLGSTQNQTNDDGLKTAAKYFQRAAGIFTFLKDNVYPVLQTLPTPDLSVSCLTALNSIMLAQAQDCFYMKATADKMKDAIIAKVAAQAADFYQEAYRSVTNYEVKGLWDKEWLTHLQCKQGYFIAASEYHQSQVNAAAGAYGEQVGRLQKADKQCSDALKAAGQTAPSELKSLSASIKKIYTTAKKDNELIYLASVPSSDSLTAIGRASLSKPLPVSSPMSSNFVDLFNKLVPMQVHQAMSAYDSNKANIINQEIGKLREATQFLNGILASLNLPAAIEDLTGNTVPPSVLEKAKQLKDKGGLSSIDNMMQNLPDLLQRNQEVIDETFRMLDTEEGDDTQMREHFKDRWNRTPSNKLTQQLRDEGNKYKAILSNATGADGIVKEKYNTHRRGMEILSKSDSDIAASLPKGSTSASSAGNAHVQQLQELMRQVEQTKKERTTLEDEFKGATVDMQSKFLQALAAEGFLDNERIINTNLDEIYGPLRTQVAEIVQNQQSLIEQIQAANTAFNDSKHG--QTNQRDQMLKDLAAAFDAYVELSANLQEGSKFYNDLTNIMLKFQSKVTDFVFARKTEKDDLSKDLQQQAAKGTSAPTPSVPSHHQAP 731
            M+TF+ + LKKT+ VD  KPL  +I+ T+   GE   +   +  EL++LR  AV + LDKHE +LETL RYYDQ+ ++E K P +E+Q  ++FTW DAFDKGS+FG S K  L+S  YE+ C LFN   L SQ+ + QN  ND+GLK AAK++Q A+G F  +K+ V   L   PT D+S   +  L+ IMLAQAQ+ F++KAT DKMKDAIIAK+A QAAD++ +A++     + K    KE    L  K     A +EYHQS +      +GE++ RLQ A +       A+       +K  S  I +    AKKDN+ IY   VP    L  IG+A+L K  PV+ P+S  F DLF K+VP+ V Q+++AY+  KA+++N+ I ++REAT   NG+LASLNLPAAIED++G+TVP S+L K++ + ++GG+ ++D +++ LP+LLQRN+E++DE+ R+LD EE  D  +R  FK+RW RTPSN+L + LR EG  ++ +L  A  ADG VKE Y +HR  + +L K + ++ A++P  + + +  G+  V  L+ L+  +++ KKER  LE++ K    DM SKFL ALA +G ++ E +  T LD +YG L T+V E ++ Q+ L++ IQ ++  F+  K    + N R+++LK+LA A+D +VEL ANL+EG+KFYN+LT I+++FQ+K +D VFARKTE+D+L KDLQQ  A+  SAP+   P++  +P
Sbjct:    1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQC---QYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTV--ASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSP 731
The following BLAST results are available for this feature:
BLAST of TCONS_00025718-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDC6I0.000e+044.57Programmed cell death 6-interacting protein OS=Hom... [more]
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