TCONS_00025049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025049
Unique NameTCONS_00025049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025049 ID=TCONS_00025049|Name=TCONS_00025049|organism=Clytia hemisphaerica|type=transcript|length=2641bp
CAAAACTTCATGAATTATTTTAACAAAGAATGAACAAATTCAGATTGAAA
GACTgtgtaaaataattttcacaaaagttttgaagttaaGTGTCTTGTTA
TGAGGTTCATAGTTTGGTAACAGAACAGTGTTTGTGTTAGTTTGTTTACA
TGGTGAGTTTAGAAGTTGAAAGTGTTTAGTGGACGAAGCAAAGCAGCATG
ATTATCAAATTCAGAGgaCCAAGTTTTGTCTTCCTCCCAATCCTATCAGT
GTGTTTTATCATACTCTACTTACGAACAAACTATCAAGTGACAATCTCAA
GCATAGATGAAGGATTCTCATTCCAAAACTATAAAGCAAAACGACAAATT
GAAGTagcagaaaatgaaaaacacgaCAAATGGATTGTCATCACTTCTAT
CAACCCTCCAACAGAAGATGTcaagaaattggcaaaaatcccTGGATGGA
AAGTGGTCATGGTTGGTGACACCAAATCACCAAAAGACTGGAGttATCCT
AACGTCATTTTCCTGGATATTGAAAAACAGAAACAGCTCGGTTACAAATG
CCATTCTTTGTTGAAGTACAGAGCGTACACGCGTAAAAATATCGGTTATT
TATACGCAATCCAACATGGCGCACAAGTCATCTATGAAACAGACGACGAC
AATAGTCCAACTAACGGACAAATCGAATTCGACCAATCACTGACTCGAGA
TTACTACGTTTACGATACAGGCTCACAAACACATGTGGTTAATCCTTACG
CTCATTTTGGTCAAAAATCGATATGGCCAAGAGGTTATCCATTGGATAAG
ATCAGCCAGGAATCACCAAAGACATTCAGAAAATGTCATGGACGAGCAAG
CATACAACAGGGAGTTGTAGATGGTGACCCAGATGTAGATGCCATTTTCA
GACTGACCAGAAAAGACACCGGCGTTGATTTACGAGTCACTTTCGATAAG
GAGGCACCACCAGTGCTTTTACCCAGAGGTCTCATGGCACCTTATAATAC
ACAGAACACGTTACACTTATATGATGCTTTTTGGGGGTTATTAATTCCTC
AGACTGTTGCATTTCGTGTGTGTGATATATGGCGTGGTTATTGGGCACAA
CGTTTGATGTGGGAAGTGGATCGATATCTTTCCTTCTTCCCTCCCAATGC
AGTGCAAATTAGAAACTCACATAGTTACTTAGATGATTTTATAGACGAAC
GTGAGCTGTATCACCAGTCTAGTGGTCTAGTTGAGTTTCTGATCAACTGG
CaatccaaacaaacaaactttctTGATACTATATTACAATTATCAAGAGA
TATGGTTAAGAAGGACTTTTGGAGACCTGATGACGCTCTGTTAGTTCAAT
ACTGGTTGGAGGATTTACTATCTGTTGGCTATAAACCACCAACATTGAAA
AGTGGTGAAGCTAAATGCACGTCTGATCAGATCACTTTCACCTCACAAGA
CCAACCTTCGTCGTATCTTGGTCTTGGGGTAAccaagaaaatcattttct
agacaTTCTTTTTTGGTCATGGAAATTTTCTAGTATGGAATTATTTATAC
AATGTGTCTTAAAAAACAGAGCATATTTTGTTTAGAGTAAATCCTAGGCT
GTTGCAGCACCCACTAACGAATCCGTGTTCTTATACTATCTgcagttttg
tagaggtctgtggcTCTAAATATCCATCATGATTTCTAACAAGCGCCGCA
AGCTGCGGATAAATAATTGCTCTGTATTATCTAATATCATGACCTTAACT
GAATTAATCTCGATGTGTTAGGTCCCTTCTCCCCTACTTTCATTTACACC
CTGTGAATTCATTAATAGTGATAAATGTTAGTTTCTAGCTGCTGTCCATT
ATGCTCTTTTGTTGTCAGATTCAAAGAATGTGATCGTGAGCGTGATCGTG
TGAGTATGACCTGCTTGAAAACggggcaaattttcaaaaaaatattttta
gaccAAAGACCAGTTTATTTTGGATATCCCTATCACAAAAGGGGTTGACG
GTACTAAGCTTTTTTTCAAACATGCCATGAGGTGGAAAAATAACGATTTT
AGCAATCTTTGCTATCGGCATTGACGATGACCCAAGAAAAATGAGTCTGG
ATTTTGGTGTTCCCGACCCCTGTACACCGTACATAACGCTTGTCAATCAG
GGTGTTAAGTcactttttgagcatttttgcaattttcatgTAGCATCATA
ATAGAAATCGAGTTTCAGAGCTTACGGTCTATTATATTCCATACGAAcca
ataaattatttttatctatTACATTTTTCTAGACATTTAATTTATATGTT
ATACAATAGTCTCAGGTGAAGAGCAGGTAAATTTCTCAATAAAGTTCTCA
GGTAAATTTTGGATAATGAAATTTATCATGATTGTATTTATGCTTTAttt
caagtattacaaattatatttttcaccCTGCCTTTCTTCCTTCCTTTAAG
ACAAAAATGTTGCCTGAAAACTAAATGTTTTGATTGGGTGGGGTAACTAG
GAAAGTGAAGGGTACGGTAATGTGGGGGTAATGTGCCGCACTTAAGATTG
CCTTTTTTGGAACCTGTAAaggttgcaaaaatcagaacATTTGATTCCAG
TCTCTAAAGGGTCGGAAAAACGTAAAATTCCGACTTTTTGC
Run BLAST on NCBI

transcript from alignment at sc0000517:188612..192088-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025049 ID=TCONS_00025049|Name=TCONS_00025049|organism=Clytia hemisphaerica|type=transcript|length=3477bp|location=Sequence derived from alignment at sc0000517:188612..192088- (Clytia hemisphaerica)
CAAAACTTCATGAATTATTTTAACAAAGAATGAACAAATTCAGATTGAAA
GACTGTGTAAAATAATTTTCACAAAAGTTTTGAAGTTAAGTGTCTTGTTA
TGAGGTTCATAGTTTGGTAACAGAACAGTGTTTGTGTTAGTTTGTTTACA
TGGTGAGTTTAGAAGTTGAAAGTGTTTAGTGGACGAAGCAAAGCAGCATG
ATTATCAAATTCAGAGGTATTTTTTACTCATCTTCATTTTCTTGAAAACA
TTTTTATACTTTTTTTATCTTCTTATGAAGAAATTTCGATCTGGATGACT
TGATATTAAACAAGATGCAAATTTCTGTTCGTGGCACAAGTAAGTTAAGC
TCCTCTAAAAACACATTTTGTTTGTTTGAAATGTGAGAAGTGTAATTTTT
GCTTTTTTTTCAACCCTTATGACCTCTTCCTAATTACTCAAATTACATTT
CGTGGCTTTTTCAATCCTTAGTTCGACTTCGATATGATTAAAATAAGACA
TACCTTCAAAGGTAGGAGGGTGGCCTAGATAGTGTTTAATTTGTTTAGGT
AACCCGTCTACAAATCCATCCATCCCAATCCATTTCAATAAGAGATACAG
TGTAGTCTCCATAACTCGAGCCAGCACGGGGAACACAAATTTGTTCGTGT
GATGGAATGGAACAATTTCGAGTCATGGAGACTGGTTTATAAGGTGTTGG
TAACTGAAGGGACAAGAAAAACGGTTCGAATTAAGGAGAATATCGATTAA
TAGAGGTCCGAGTTCTGGGGACTCTAGTGTGTTAATAAAATGATGTTTTT
TTCTTTCATAGGACCAAGTTTTGTCTTCCTCCCAATCCTATCAGTGTGTT
TTATCATACTCTACTTACGAACAAACTATCAAGTGACAATCTCAAGCATA
GATGAAGGATTCTCATTCCAAAACTATAAAGCAAAACGACAAATTGAAGT
AGCAGAAAATGAAAAACACGACAAATGGATTGTCATCACTTCTATCAACC
CTCCAACAGAAGATGTCAAGAAATTGGCAAAAATCCCTGGATGGAAAGTG
GTCATGGTTGGTGACACCAAATCACCAAAAGACTGGAGGTAGGTTGATAC
TCTCATGAATTGCAACACCTGTATTACACCCCTGTCTAGCAGCCCCGCTA
AAATGTTGTTTCTGACCCTTGTTACACAGTACGGAGCAGTCCATTTCACT
CTACGGTGCTGAAATGGAAGTCGTATTCAGATTATAGAAATAAAAGCCCC
TTATCTTGTTTTTTTTTACAGTTATCCTAACGTCATTTTCCTGGATATTG
AAAAACAGAAACAGCTCGGTTACAAATGCCATTCTTTGTTGAAGTACAGA
GCGTACACGCGTAAAAATATCGGTTATTTATACGCAATCCAACATGGCGC
ACAAGTCATCTATGAAACAGACGACGACAATAGTCCAACTAACGGACAAA
TCGAATTCGACCAATCACTGACTCGAGATTACTACGTTTACGATACAGGC
TCACAAACACATGTGGTTAATCCTTACGCTCATTTTGGTCAAAAATCGAT
ATGGCCAAGAGGTTATCCATTGGATAAGATCAGCCAGGAATCACCAAAGA
CATTCAGAAAATGTCATGGACGAGCAAGCATACAACAGGGAGTTGTAGAT
GGTGACCCAGATGTAGATGCCATTTTCAGACTGACCAGAAAAGACACCGG
CGTTGATTTACGAGTCACTTTCGATAAGGAGGCACCACCAGTGCTTTTAC
CCAGAGGTCTCATGGCACCTTATAATACACAGAACACGTTACACTTATAT
GATGCTTTTTGGGGGTTATTAATTCCTCAGACTGTTGCATTTCGTGTGTG
TGATATATGGCGTGGTTATTGGGCACAACGTTTGATGTGGGAAGTGGATC
GATATCTTTCCTTCTTCCCTCCCAATGCAGTGCAAATTAGAAACTCACAT
AGTTACTTAGATGATTTTATAGACGAACGTGAGCTGTATCACCAGTCTAG
TGGTCTAGTTGAGTTTCTGATCAACTGGCAATCCAAACAAACAAACTTTC
TTGATACTATATTACAATTATCAAGAGATATGGTTAAGAAGGACTTTTGG
AGACCTGATGACGCTCTGTTAGTTCAATACTGGTTGGAGGATTTACTATC
TGTTGGCTATAAACCACCAACATTGAAAAGTGGTGAAGCTAAATGCACGT
CTGATCAGATCACTTTCACCTCACAAGACCAACCTTCGTCGTATCTTGGT
CTTGGGGTAACCAAGAAAATCATTTTCTAGACATTCTTTTTTGGTCATGG
AAATTTTCTAGTATGGAATTATTTATACAATGTGTCTTAAAAAACAGAGC
ATATTTTGTTTAGAGTAAATCGTAGNTTATCTATACAATGTGTCTAGAAA
AACAGGACATATTTTGTTTAGAGTAAATCCTAGGCTGTTGCAGCACCCAC
TAACGAATCCGTGTTCTTATACTATCTGCAGTTTTGTAGAGGTCTGTGGC
TCTAAATATCCATCATGATTTCTAACAAGCGCCGCAAGCTGCGGATAAAT
AATTGCTCTGTATTATCTAATATCATGACCTTAACTGAATTAATCTCGAT
GTGTTAGGTCCCTTCTCCCCTACTTTCATTTACACCCTGTGAATTCATTA
ATAGTGATAAATGTTAGTTTCTAGCTGCTGTCCATTATGCTCTTTTGTTG
TCAGATTCAAAGAATGTGATCGTGAGCGTGATCGTGTGAGTATGACCTGC
TTGAAAACGGGGCAAATTTTCAAAAAAATATTTTTAGACCAAAGACCAGT
TTATTTTGGATATCCCTATCACAAAAGGGGTTGACGGTACTAAGCTTTTT
TTCAAACATGCCATGAGGTGGAAAAATAACGATTTTAGCAATCTTTGCTA
TCGGCATTGACGATGACCCAAGAAAAATGAGTCTGGATTTTGGTGTTCCC
GACCCCTGTACACCGTACATAACGCTTGTCAATCAGGGTGTTAAGTCACT
TTTTGAGCATTTTTGCAATTTTCATGTAGCATCATAATAGAAATCGAGTT
TCAGAGCTTACGGTCTATTATATTCCATACGAACCAATAAATTATTTTTA
TCTATTACATTTTTCTAGACATTTAATTTATATGTTATACAATAGTCTCA
GGTGAAGAGCAGGTAAATTTCTCAATAAAGTTCTCAGGTAAATTTTGGAT
AATGAAATTTATCATGATTGTATTTATGCTTTATTTCAAGTATTACAAAT
TATATTTTTCACCCTGCCTTTCTTCCTTCCTTTAAGACAAAAATGTTGCC
TGAAAACTAAATGTTTTGATTGGGTGGGGTAACTAGGAAAGTGAAGGGTA
CGGTAATGTGGGGGTAATGTGCCGCACTTAAGATTGCCTTTTTTGGAACC
TGTAAAGGTTGCAAAAATCAGAACATTTGATTCCAGTCTCTAAAGGGTCG
GAAAAACGTAAAATTCCGACTTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014081XLOC_014081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025049-exon-sc0000517-1575043694:191873..192088TCONS_00025049-exon-sc0000517-1575043694:191873..192088Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1575043694:191001..191277TCONS_00025049-exon-sc0000517-1575043694:191001..191277Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1575043694:189739..190817TCONS_00025049-exon-sc0000517-1575043694:189739..190817Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1575043694:188612..189680TCONS_00025049-exon-sc0000517-1575043694:188612..189680Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1510915933:191873..192088TCONS_00025049-exon-sc0000517-1510915933:191873..192088Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1510915933:191001..191277TCONS_00025049-exon-sc0000517-1510915933:191001..191277Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1510915933:189739..190817TCONS_00025049-exon-sc0000517-1510915933:189739..190817Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1510915933:188612..189680TCONS_00025049-exon-sc0000517-1510915933:188612..189680Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1491911889:191873..192088TCONS_00025049-exon-sc0000517-1491911889:191873..192088Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1491911889:191001..191277TCONS_00025049-exon-sc0000517-1491911889:191001..191277Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1491911889:189739..190817TCONS_00025049-exon-sc0000517-1491911889:189739..190817Clytia hemisphaericaexon
TCONS_00025049-exon-sc0000517-1491911889:188612..189680TCONS_00025049-exon-sc0000517-1491911889:188612..189680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000517supercontigsc0000517:188612..192088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0875271	0.0284509	0.0165171	0.0323188	5.17571	5.50312	17.5359	18.3615	4.61755	5.41786	6.4443	3.45993	4.52388	0.908988	0.281696	1.72119	0.713322	1.25596	2.60522	3.66735	0.631804	1.56952	0.896476	0	3.21079	2.88486	0.680098	0.213476	0.275253	0.395916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top