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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024930 ID=TCONS_00024930|Name=TCONS_00024930|organism=Clytia hemisphaerica|type=transcript|length=2505bpRun BLAST on NCBI protein sequence of TCONS_00024930-protein >TCONS_00024930-protein ID=TCONS_00024930-protein|Name=TCONS_00024930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp KLVCFIKDLHNLQHHPEPVLYLLQQLIKHNSAYNPYRKQTQSLGEITFVLRun BLAST on NCBI transcript from alignment at sc0000513:239549..253658- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024930 ID=TCONS_00024930|Name=TCONS_00024930|organism=Clytia hemisphaerica|type=transcript|length=14110bp|location=Sequence derived from alignment at sc0000513:239549..253658- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000513:239549..253658- >TCONS_00024930 ID=TCONS_00024930|Name=TCONS_00024930|organism=Clytia hemisphaerica|type=CDS|length=43794bp|location=Sequence derived from alignment at sc0000513:239549..253658- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024930 vs. Swiss-Prot (Human)
Match: DYH9 (Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3) HSP 1 Score: 173.711 bits (439), Expect = 3.601e-44 Identity = 153/703 (21.76%), Postives = 321/703 (45.66%), Query Frame = 1
Query: 343 HMKRMENVTAMKKLLNKIVSITIELQNVMKTMYLRTPQRFHYVFTMRTLKRLFTQ-LCRSLPSDAAPRDILTTWYYELHWTYHYVLIDDVDKERWRHTFKTIAKKELAKEQMEILEDEVPIL----SNIVVDKETQTVVHWENQESPMNNKFSIQQLQTYLKNHLMEFNKDNPKLKIYFFEDRVRIMYRLLQILQSNFSNGHALLIMEGSPDIPPMLFRLLSDILQIELFTVNPSSVANDRVYDMEMFKSDLVSCLIKAGIKKQKVIFTLTSLELFDDGIITLVDELLQKGTMAHVFNEEDKNSVINTIRTSGDQEQARLSKAEAWNEFVKNIHENLHVLLSLSFTDEKFQEISLRHPNLITAMQVVYSKIWDQQKLVQVAQYVLSELTDLKESKKQDIAYLLAALHIELQKQDGGEVAG--RYNNITNANFELFIERFVDFYTAKTKEIGEQKETIRNTLRTVEESSSTGLSLVKKLDHEKRVITQKQQGCTTLLTQIGQDRAITEEHTRXXXXXXXXXXXXXXXIPQYEEAHKRAIFKAAAIVRETKSILQSLDDRELSDIRSMQKPDSEIEDLLAAIIIVVKSPSA----DLTWNRGAKRIMANIERFKEDLSGFDDVELPDATLQVLRPYVNKPHFAPGYLSTRTGNTAIGSLVLYVRGVVRYNYIMQSHVKPLHQKVSDTAEKLDMVSEKLSGMEKKL 2418
H+K +++K + ++ + + + T +L T +FHY+F +R +F L S+ + D++ + +E + Y ++++ D + + + KK + + + + P L +N + + + V WE Q L L+NH N+ N + + FED +R + + +IL+S G+ALL+ G L RL + I +++F + + Y ++ FK DL S +KAG+K +F +T ++ D+ + L+++LL G + ++++++ ++I+ +R + ++ W F+ I L V L S K + S + P ++ + + W QQ L V+ L ++ + KQ I+ +A +H + + ++ RYN T +F FI + KE+ + E + N L + +S+ L KL ++ + QK + L+ +G + + + + K + + Q ++ + + KA + ++ L +L+ L++++S P + ++ AA+++++ +P D +W + AK MA ++ F + L F+ + + L+ +RPY+ P F P +++T++ A L +V +VR+ Y + V+P Q ++ L EKL+ ++ K+
Sbjct: 2634 HLKLGNFPASLQKSIPPLIDLALAFHQKIATTFLPTGIKFHYIFNLRDFANIFQGILFSSVECVKSTWDLIRLYLHESNRVYRDKMVEEKDFDLFDKIQTEVLKKTFDDIEDPVEQTQSPNLYCHFANGIGEPKYMPVQSWE---------LLTQTLVEALENH----NEVNTVMDLVLFEDAMRHVCHINRILES--PRGNALLVGVGGSG-KQSLTRLAAFISSMDVFQITLR-----KGYQIQDFKMDLASLCLKAGVKNLNTVFLMTDAQVADERFLVLINDLLASGEIPDLYSDDEVENIISNVRNEVKSQGLVDNRENCWKFFIDRIRRQLKVTLCFSPVGNKLRVRSRKFPAIVNCTAIHWFHEWPQQALESVSLRFLQNTEGIEPTVKQSISKFMAFVHTSVNQTSQSYLSNEQRYNYTTPKSFLEFIRLYQSLLHRHRKELKCKTERLENGLLKLHSTSAQVDDLKAKLAAQEVELKQKNEDADKLIQVVGVETDKVSREKAMADEEEQKVAVIMLEVKQKQKDCEEDLAKAEPALTAAQAALNTLNKTNLTELKSFGSPPLAVSNVSAAVMVLM-APRGRVPKDRSW-KAAKVTMAKVDGFLDSLINFNKENIHENCLKAIRPYLQDPEFNPEFVATKS--YAAAGLCSWVINIVRF-YEVFCDVEPKRQALNKATADLTAAQEKLAAIKAKI 3310 The following BLAST results are available for this feature:
BLAST of TCONS_00024930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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