TCONS_00024309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024309
Unique NameTCONS_00024309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024309 ID=TCONS_00024309|Name=TCONS_00024309|organism=Clytia hemisphaerica|type=transcript|length=1016bp
cattgagtttaaagcccgaagggctagagttcaatctctaacctttctca
ggcaagaaaaagtgaagccttaaaaaatgcgccgcacttttgacgacaga
ttgaatctagcaattcctttgtttacgattgatatttttttcgaaattta
gcggtaaattttagtttcaatctgttatttgtgtaaaaaccaggcgagcc
gcgcaactttggtaggatttgtccCGTTTTCAAAGATGACGTTATCTTAG
TGATcaaccactttcgctttcgatctcaacgaaaaaatatttttttccaa
agaaatGTGAAGGAGAGTTTGGAGGTGTTTGTTGTGTATTTAGACATTAG
AGTTTGCTGGAAAGTGGGTTTgcaaacttttatttttgtatGCCTCTGTT
GCAGCATTTATCTTCGTTTAATTTGTGATAAAAAATGAGTGTTATCAGAA
GCCCCAGACACATTTTCAGACaattatttGACCAAGAATCGTGGACTTTC
ACTTATTTATTGGCATGCTTGAAAAAACGTGAAGCTATTCTCGTCGACCC
AGTGGATACTCAGGTGGAAAGAGACTTGAAACTAATGGAAGAACTGAAAC
TCGATTTGAAATACGCAATCAACACTCATTGTCATGCCGACCATATAACC
AGTACCggcattttgaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCT
GAATAGCGGTGCAAAAGCTGATATATTACTCAATGATGGTGATCGAATTT
CCTATGGTGATAGGGAAATAGAATGCATTTCCACGCCTGGACATACAGAT
GgttgtATGACATTGGTAAATTATGAAGAACGAATTGCAATGACAGGGGA
CACACTTCTGATACGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGT
TATccatcaatttttcatatttttatgtacaATTCTTTTTCAAAGAGCCA
TGTCGTTTATCtgtctgatattccgatggtggattggcggccgcccttGC
TAAAGCTCTAAACGCT
Run BLAST on NCBI

protein sequence of TCONS_00024309-protein

>TCONS_00024309-protein ID=TCONS_00024309-protein|Name=TCONS_00024309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MSVIRSPRHIFRQLFDQESWTFTYLLACLKKREAILVDPVDTQVERDLKL
MEELKLDLKYAINTHCHADHITSTGILKNKTNCKSMISLNSGAKADILLN
DGDRISYGDREIECISTPGHTDGCMTLVNYEERIAMTGDTLLIRACGRTD
FQQGLLSINFSYFYVQFFFKEPCRLSV
Run BLAST on NCBI

transcript from alignment at sc0000487:218542..229801+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024309 ID=TCONS_00024309|Name=TCONS_00024309|organism=Clytia hemisphaerica|type=transcript|length=11260bp|location=Sequence derived from alignment at sc0000487:218542..229801+ (Clytia hemisphaerica)
cattgagtttaaagcccgaagggctagagttcaatctctaacctttctca
ggcaagaaaaagtgaagccttaaaaaatgcgccgcacttttgacgacaga
ttgaatctagcaattcctttgtttacgattgatatttttttcgaaattta
gcggtaaattttagtttcaatctgttatttgtgtaaaaaccaggcgagcc
gcgcaactttggtaggatttgtccCGTTTTCAAAGATGACGTTATCTTAG
TGATcaaccactttcgctttcgatctcaacgaaaaaatatttttttccaa
agaaatGTGAAGGAGAGTTTGGAGGTGTTTGTTGTGTATTTAGACATTAG
AGTTTGCTGGAAAGTGGGTTTgcaaacttttatttttgtatGCCTCTGTT
GCAGCATTTATCTTCGTTTAATTTGTGATAAAAAATGAGTGTTATCAGAA
GCCCCAGACACATTTTCAGACaagtaagtttttttaaattttaaaccaga
cccgatcaatcgaacttgtcgaaccaatcgaacaatcgaactaatcgaac
tccatcgaacaattaaagttcgattaaaaaaattaatttaactctaagat
ttttttaaagattgtgagtgttcaattaagttcgatcaatgggtttcggt
tcgatcagttcgataaaccaattttgttcgacaagtttgtgctgctccgc
cactgTATATTCAGGTATATTAcctagcttcttttcaaagccaaattcgt
aATGTAAATcaggaaattacttccgataaccgATTACACACTTTTTCTGT
AtatatccttttagcgccagaggcggtttgttggggcgtagtatATATTC
CGCCACTTCGGCCGCGCGcaaaatcgcaacagaggggctacagACTTTAT
TCCGgttagacaaatatccgggtacaataaacgtcaagctgttaagtcgG
GGAACTGTCAaaatggcaatcgcgtgccaggacaaagtttttgcaagcga
gggaagatatatgaggatttaatatcatcgaactaatcaaactttttact
gaccgaactaatcgaactgctattgcttcaaaaattgtgagtgtttgaTT
AGGttccattaatttttttaattgaactttaatcgttcgatggagttcga
ttagttcgattgttcgattggttcgacaagttcgattgttCGGGTCTGGT
TTAAAGAGCACTAGAGGCAGGGAAACTATCCAGGATCCTACCATTCTAAg
ccagccagccagccagcaaaaactaaatgacacttgtaaacttaagtttc
ttaccatttccattaaaaacaaccaaaaacattactatatacttcccaaa
gccgaagaccaaaacaaattatatatCTCCCAAGAAGATTATGGTGCCCT
TTTTTGTTGTAGATGGACTGTGgtttaaaagttttttggaGGTACGTCGT
GGTGGCAAGGTGTTTTTTTAtgaggttgaagtttggaaATTTCCgctgtc
aacattcaatttcttatacacaacacacTTTTTGCGTCTCTCCTCACAAC
TTGAAATGTCATAGCGACATAATTGGTAATTAAAAATAGAAGAATCTAGC
TCTCACgacaagaaaatcttttaaaagtccATCTTGGGAATTGGATGACT
GATTTTTGATTgagaatgcaattaaaatgctaaGAAAATTCAATTAATGA
GGGAAGTAATAAGGGACAAACCCTTAGGACCCATGACAACCCTATATAAT
gcaattgaattgaattgaattgaattgaatatattttcgctgcaacacag
caggataaccccttacaaaaaaaaatagatttctctaatacaatggggaa
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Natacaatggggaacctagaagaaactgaaaaattattacagaactaaag
aaaaaatgaataaacgattatcataatattaatagtgacaACAAAATAGT
GAATatatataagaaatatttttacttttattttatgacaatttctttga
gtagatttatctataaagttcttcctgttacaccacccaccactcccacc
ctgggaaaacacactaagttCACGCACACACAATACAcgcacacacagac
acacacacacaaagattattcgtcttcaactttgtatttgtctaaataga
attttgtagctaaagattttagttcatcagtatcaaggttgtgaaaatca
gtgtcaggatgatttattagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGTTTAGAAGGATGTGAATTGGAACATAGTGACG
AAGTTTGGatattgccccatttgcccttcTCAATGTAGCAGCAACGAAAG
AAGTATGGACGCAACGCAACAAAACCTGGTCCACTGGGTCCATTTCAAAA
CATGAATGAAGTATTTAAAGGCTATATATAGCTATCAACTTAAAAGTCCT
CTATATCGTTTTATGAGAGCTTTCGGTCGGTTTATAGTTTTTAGGTTTTA
TTGACTTTGGAATTTTGTCAAGCTTTTGGGGTCAAGGGATTTTGAAATGG
ACCAGGTTTGGTTGTGTCGCATGAAAGATGTCACACACCTCCTCAAGAAT
TTACCCCTGCAAAATTATGTTTTATTCTGGCGCAATCTTCAGGCAATGCA
GTgtattcaattttaaattttatttcaatcagttgaagttaaattttatt
ttatttttttcagttatttGACCAAGAATCGTGGACTTTCACTTATTTAT
TGGCATGCTTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACT
CAGGTATATGAATGTATTTCAGAGGGGAACCTAAGGGGGATTtcggtaca
cattttttttacctaaaaactATCGAACAATCTCTCTTCTTTCAAATAtc
agcaaaatctttgaaaaaatcctTCAGTTAAATCTGTTTTGGTTGACTTT
CGCTTACTTATTGGCATGTCTGAAAAAACGTGAAGCTGTTCTCGTCGACC
CAGTGGATACTCAGGTATATGAATTGTATTCCAGAGGGGAACCTAAGGGG
GATTtcggtacacatttttttacctaaaaactATCGAACAATCTCTCTTC
TTTCAAATAtcagcaaaatctttgaaaaaatcctTCAGTTAAATCTGTTT
TGGTTGACTTTCGCTTACTTATTGGCATGTCTGAAAAAACGTGAAGCTAT
TCTCGTCGACCCAGTGGATACTCAGGTATATGAATTGTATGGCAGAGGGG
AAACTAAGGGGGATTtcggtacacatttttttacctaaaaactATCGAAC
AATCTCTCTTCTTTCAAATAtcagcaaaatctttgaaaaaatcctTCAGT
TAAATCTGTTTTGGTTGACTTTCGCTTACTTATTGGCATGTCTGAAAAAA
CGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAGGTATATGAATTGTA
TGGTAGAGGGGGACCTAGGTATCTGGGAAAATGAAGGGTACGGGTATATA
CTGcccttaagggtcccttttttggATATTAAAAAACCTGCTAAAGATGG
TCAAAACCATAAAATCtaattacactctttttttaaaggcataacgttta
taagcatacttatgCTCGAATTCGGTAAAAAgtaagcataatgctaagca
tacctccaagctgaaatgcaaaaagaaaaattgcagcTTTTCTACAAGGC
TGACCTTTTAAGGGTCAGACCAAAGATTTTTGCCCACGGCgcaaaattac
aaagaaaacttttcattctttgagccgaatcaatgttccgacttaaaaat
tcgaaattttcatcttcacccaaagaaaatcaacaaatcaaaGTCTATAA
AgcataaacatatttttttaattttgctaaACATATTGAGCCTTGACCCG
AATTTCCAAGGTCTATCCAAGTTATTAATAAATGGGTCGCTTTCGGAGCC
TTTTTTCTTCCATAAATATAGTTTTAAAACGTGAATTACGCCACCATTCT
TGGATGTCAAATTGATTCCAAACGTTAAGGggcattttttacaatatagt
cccaaacaaaaaaaagtgtTCTGCCAGGTTCCCAAATTTACCATTCGTAt
ttgacagggtccacttttcaaactccagcgagTGGTACCTCCCCTTCGGC
TGGCAAGGTCAGGGCTAAGATTAATCCATGATGAAATGTAAAATATTAAA
AGCATCGTTACTTCTTCTGATTTTTCAGGTGGAAAGAGACTTGAAACTAA
TGGAAGAACTGAAACTCGATTTGAAATACGCAAGTAGGTATCTTAAAGCT
AGATTCCTATAAAAAATAACTTCTGAATCTCTATGAATAAAAACAgttga
aatttcaaaagcttTGCAGTCgcgaaattgtttttttttaaggaatcATT
AAAGCCAGTATATTtgttcatgatatgcaccactggagagtcttctgaaa
acttttaaaattttccactcagtacatcacttaaacaatagaaaaagtga
cgtattgggtggaacaaaaacagaaaagttgtataaattcgtgaagtcat
tgcagtggtgcatatcatgaattcttgaGTCTGCTaaaaaatagtcgaac
gtgcgcaacgcactgggctcaacttcagtagcttCAAGTTAtttataggc
ccaattgtagaccccaagATATTCATCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggtactagggtt
gcgagctgacgggggggccgcccgactttcgaactttgtcCCTTAccgga
ctaaaaaggagaaaacaaaggaaaacttTGAGAGAATTGAGAGAAAACTT
TAGCGGGACAAACTTGACCAACTTTAACCAAATTTcaatctttcaggggg
taaaaagtggaaattttcctattttttccgacccttagtgggactttgga
aatccaaaaaaggtacccttaagggcggcacataccataccctccatttg
cctaagtactcccggacattgagtttaaagcccgaagggctagagttcaa
tctctaatctaagcaagaaaaagtgaagccttaaaaaatgcgccgtattt
ttgacgacggattgaatctagcaattcctttgtttacgattgatattttt
ttcgaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagt
ttcaatctgtcatttgtgtaaaaaccaggcgagccgctcaaggccgcgca
actttggtaggatttgttggcttcaaatcctaccaagaagattgatttct
agcccttcgggtttataCTTCATTGCCCCCGGGCTCTCTGTTCATTGAAA
TGTTATATTTAAGTGAAGACATTCCAGTATTGCATCGAACCATTAAGATA
CGTCACGAGCTatctcttttgttttgatgattggttgaataaCTGCAATC
TTTATGCAAGCTCAGCGTTTTTGGagcagcgattcagacctcggaaaaca
taatgtcaatctggctttaaaggttttatttttacataagtcttctgttt
catatcagacacatatttcatatcaggacagtgtctgtgtattgttatat
tatgctgatgtaagcaaaaaaaatgtttttcttttcctctttctgaccaa
tcttgctccacacccgTGGCAATCCAATGGGAAAAAGCTTGTGAtttgtg
aattgaaattgattagaaagcaaacgatatcactcttatttaaaaacaaa
acctttattaAACTCCAGTGGCAcatccccgtcggccgtcaaggtcagtg
gcCATCCGGGTTAATGTCtaaaaaatttactttcattTCTTTCAGTCAAC
ACTCATTGTCATGCCGACCATATAACCAGTACCggcattttgaaaaacaa
aaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCAAAAGCTGATA
TATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAGGGTAAGCCAA
CTAATTTCTGAATCAAAAATTGTATTGGGCATCGGGACATCTCATCGACA
TCATGGCTAGAATTTATTCCGCCCCTTGCCTGAGAATGAAGTGGCTATAA
GGTTGAGCAGTCGGTGGCACCAATGAATTCCTTTTCTCAAACTATATACG
AAATTCTAAActttgctttttaatgaattttgatGACGCTAAGTCAAGTT
AATTGGTAGACTAGAGGATATTGTCTTCTTTATATTTTACCTTAGCTTTC
AATAAATTTAATTACTGTGTcacaaaaatctgctctcctacaaaaatttt
gccccccccccttgtctacgctactgagaGGGtatgttgtcattgtcttt
tctgatttgatatttttcatgaaGCAAGGGGAGAGAACACTATGTCCTGG
CAGTCCTGGCAATGAAAACAATCTGCAGAATCCTATATAGATTTAAATGA
ATGAATTTAGCGATACCTCCTTTAACTAAAGcccaaataaataataaaat
taataataatttaataataATATGTCACGTgtattaattttaattttttt
cttctccatTTTATTTAAGGAAATAGAATGCATTTCCACGCCTGGACATA
CAGATGGTAAGATGGGACGAATTTAATATAATATTCtatgcccagctggc
acacaacgttattggTCAGCCtcggtgacccttcaaatcggttccgcgat
ttttttcccgctggtgAAGCTCtggatcaaaattttgaaacttttaaaac
cGATTTCCGAAATCCGATTACCGATtaccgatctcactttgatttctaaa
ccttcttccgatcgggttaactttttgcgaacttttagcgtgtgttgttt
ttaacgatcataatgtggtgtttcaagattgCGGCTCAAGCCGATAAAGT
TAAAGTGTTgttccaaagtatttccagtgtgaATCTGTTtgtctgttgca
agcttcaatttctgtcatttatttttctaactcggcaaatcaaacacatt
attttcatcaaggggattttttttctacttcttttgaaggtttaaagccg
tttgctcaagtttttgtttatgttgaattttctgtagctagtttttgcaa
taaaaacatattattcttgtttgcctctagaggggggattgatggtgtta
taatgctattggaatttgataaagtatacaaaagtacagctactgtctaa
atttgataaagactagATGCAATcgtgtttttttggacttggacgttgGC
TTCAGACGACCCTGCCGATACACCATACATTCCGGCGTTATCTTTTGTCT
GGTAttttcttcattaaattttcaaaagtgcGCACCGGACTACACCGGAC
TGTCTGGTAAATTTTTCTCNcatgcatattgtaataattatgcatggttt
tatcattgtttttctgctggactacataattattcaacagggtggcctct
ttgaaaaaaggtctatgaatGGTGACAACAGTTATTACATATCTTTCNTC
GGAGGAAACAAAGTACACCAGACACTACACCGGAACTTTTGTCCAGTGAT
TTATCCATATATTTGCGCACCTGACAAACTGCACCGGAATATCCTGTGTA
TCGGCAAGGTTGTGGCTTCAGTCATATTATATAAGGCGTATCgcaaaaaa
ttatcgaaaatatttttctgttaaagaagcagctacatcttgttgaaagg
gaatcggCGTGGACTTGTCCGAAtttaaaaattgagaaaccgtcaaccgt
ggataaactggttttcggtttactctccctTAGCacgcggctcgctactt
cgatttgaaaacttgtaaacacagagcgNNNNNNNNNNNNNNNNNNNNNN
NNACTACTGTAGCTTAAAATTGTTAATGGCGACCAGTTACAATTTCTGGT
AGGAGCTGCAGAGAATTGTGACAACAAGGCtcaaaataacaatttcaagt
gggtcagacaaaatgtccgatcagggttgctttagcttgaaaattatgat
ttttgggtcggacatgaagccATTTGGGACGGACattgtccgatgtccga
ccgttatttcgagccctgtgaCAAGGTGTTATATATTGGAATTTGGTAAA
GTATACAGACTAAAATTGTTCTgctttagaaatttatgaaggataaaaat
atttctcacaAAGTTATATATATACTGAAGATGTAATATCAGTCATTTTA
AGGAAAGGAAAAGATATGATATATAAGCAGCTTAAAAAGATCTAAATTAA
AAAGACAagaatgtttttgtatttttgaagattatacattttttgattta
ttatttttttgaaatcattcCAATATCAGATGAAAAATACAATAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAA
GAAGCTGCAGAGAGTTACGACAAAGTGTTATTGGGgttttatcaagtaaa
caaaaaaagtacagtttctatgtaatgaaaactaaaaatggTTCTCTCTG
CACTAAAATTACGGCATGTATCTTTATTTTGGGTTTgactttttggcaat
tttcttattttttgtagtataacactttggtcagatatggatattgtcta
cacccaacagaaaaaatgtattataactGACTAAAATGAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACATCCCAAACGAGCGAGGTTCCTGGACTTTTCAACCGGCAGCTAAT
TGCAATTGTATCGAACGCTGATCTAACATTTGCTCGcatctcatcaaaat
tattcCTTTCACCCCTTTGACCCTCTAACCCCTTTGACCCTCTAACCCTC
TTAGCTcttttggctgaccttccagcctcggctggtttatttcaaTGTTC
ATTTAATGTCACAAGGTCCAtataacattagatgaacgataaaacaacgt
tgtgtgccggctgggcgGGAAGACCttcagaaaaatatgggtcggtcggt
cggtataataaaaataagttttttaaaACCTTTGACTCGGAAAATCAAGA
TCTAAGATATTTATGACTTTTTGATGaagctttttcttctttatcgaCGA
ACAAAGTTCGTGATATTTTCttagtaattttttaaattcatcttaTTTCT
AggataaattaataaattttcaCCGATTTCAGTTTTTCAGTAAAAAGCCT
ATACAGTCCATCCTTCAACTTTGCAaattcaatgttattttttttcgttt
ttattacGTTTTTGGACATTACtgtagatgaacgttgaaacaacgctgtg
tgTTAGCTGAGAAGGTTGGCTCTAATAGGTtacacacaatgttgtttcga
cgttcatctaatgtaACTCGAAAGGTCACAAGGAACAATTAATTTTACTT
ATTACGATTACTTCCTGTATTTCCTTATCGGCCCCTTTTACGCGCCGGCC
CTCATTACGCCACatcctaattttgggcttacgccaattagggctaCTAA
AAACgccaacatttttaaaaatggctACTTATACTTCgaattagtaaata
atgactaaaatttaaATTAACGCCGCCTTTAGGTTAAAATTGCACAATCT
TGGCCCTTTTAACACCGGCCCTTTTAACACCGGCCTTtcttacgccacga
gcccaaacttaacgccaataagggccttTGTAAAAAGGGCCCATAAAGTA
TTCTATAGgaaactcttttcgctagaggatgggCAGAAGCCTAACAGAAA
TGGGAAACAgaaaacacaaaataatgaataattttttttttaaaggttgt
ATGACATTGGTAAATTATGAAGAACGAATTGCAATGACAGGGGACACACT
TCTGATACGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATcca
tcaatttttcatatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGT
TTATCtgtctgatattccgatggtggattggcggccgcccttGCTAAAGC
TCTAAACGCT

Coding sequence (CDS) from alignment at sc0000487:218542..229801+

>TCONS_00024309 ID=TCONS_00024309|Name=TCONS_00024309|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000487:218542..229801+ (Clytia hemisphaerica)
ATGAGTGTTATCAGAAGCCCCAGACACATTTTCAGACaattatttGACCA
AGAATCGTGGACTTTCACTTATTTATTGGCATGCTTGAAAAAACGTGAAG
CTATTCTCGTCGACCCAGTGGATACTCAGGTGGAAAGAGACTTGAAACTA
ATGGAAGAACTGAAACTCGATTTGAAATACGCAATCAACACTCATTGTCA
TGCCGACCATATAACCAGTACCggcattttgaaaaacaaaaccaaCTGTA
AAAGTATGATCAGTCTGAATAGCGGTGCAAAAGCTGATATATTACTCAAT
GATGGTGATCGAATTTCCTATGGTGATAGGGAAATAGAATGCATTTCCAC
GCCTGGACATACAGATGgttgtATGACATTGGTAAATTATGAAGAACGAA
TTGCAATGACAGGGGACACACTTCTGATACGAGCTTGCGGTAGAACTGAT
TTTCAACAAGGTCTGTTATccatcaatttttcatatttttatgtacaATT
CTTTTTCAAAGAGCCATGTCGTTTATCtgtctgaATGAGTGTTATCAGAA
GCCCCAGACACATTTTCAGACaattatttGACCAAGAATCGTGGACTTTC
ACTTATTTATTGGCATGCTTGAAAAAACGTGAAGCTATTCTCGTCGACCC
AGTGGATACTCAGGTGGAAAGAGACTTGAAACTAATGGAAGAACTGAAAC
TCGATTTGAAATACGCAATCAACACTCATTGTCATGCCGACCATATAACC
AGTACCggcattttgaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCT
GAATAGCGGTGCAAAAGCTGATATATTACTCAATGATGGTGATCGAATTT
CCTATGGTGATAGGGAAATAGAATGCATTTCCACGCCTGGACATACAGAT
GgttgtATGACATTGGTAAATTATGAAGAACGAATTGCAATGACAGGGGA
CACACTTCTGATACGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGT
TATccatcaatttttcatatttttatgtacaATTCTTTTTCAAAGAGCCA
TGTCGTTTATCtgtctgaATGAGTGTTATCAGAAGCCCCAGACACATTTT
CAGACaattatttGACCAAGAATCGTGGACTTTCACTTATTTATTGGCAT
GCTTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAGGTG
GAAAGAGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAAATACGC
AATCAACACTCATTGTCATGCCGACCATATAACCAGTACCggcattttga
aaaacaaaaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCAAAA
GCTGATATATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAGGGA
AATAGAATGCATTTCCACGCCTGGACATACAGATGgttgtATGACATTGG
TAAATTATGAAGAACGAATTGCAATGACAGGGGACACACTTCTGATACGA
GCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATccatcaatttttc
atatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGTTTATCtgtct
gaATGAGTGTTATCAGAAGCCCCAGACACATTTTCAGACaattatttGAC
CAAGAATCGTGGACTTTCACTTATTTATTGGCATGCTTGAAAAAACGTGA
AGCTATTCTCGTCGACCCAGTGGATACTCAGGTGGAAAGAGACTTGAAAC
TAATGGAAGAACTGAAACTCGATTTGAAATACGCAATCAACACTCATTGT
CATGCCGACCATATAACCAGTACCggcattttgaaaaacaaaaccaaCTG
TAAAAGTATGATCAGTCTGAATAGCGGTGCAAAAGCTGATATATTACTCA
ATGATGGTGATCGAATTTCCTATGGTGATAGGGAAATAGAATGCATTTCC
ACGCCTGGACATACAGATGgttgtATGACATTGGTAAATTATGAAGAACG
AATTGCAATGACAGGGGACACACTTCTGATACGAGCTTGCGGTAGAACTG
ATTTTCAACAAGGTCTGTTATccatcaatttttcatatttttatgtacaA
TTCTTTTTCAAAGAGCCATGTCGTTTATCtgtctgaATGAGTGTTATCAG
AAGCCCCAGACACATTTTCAGACaattatttGACCAAGAATCGTGGACTT
TCACTTATTTATTGGCATGCTTGAAAAAACGTGAAGCTATTCTCGTCGAC
CCAGTGGATACTCAGGTGGAAAGAGACTTGAAACTAATGGAAGAACTGAA
ACTCGATTTGAAATACGCAATCAACACTCATTGTCATGCCGACCATATAA
CCAGTACCggcattttgaaaaacaaaaccaaCTGTAAAAGTATGATCAGT
CTGAATAGCGGTGCAAAAGCTGATATATTACTCAATGATGGTGATCGAAT
TTCCTATGGTGATAGGGAAATAGAATGCATTTCCACGCCTGGACATACAG
ATGgttgtATGACATTGGTAAATTATGAAGAACGAATTGCAATGACAGGG
GACACACTTCTGATACGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCT
GTTATccatcaatttttcatatttttatgtacaATTCTTTTTCAAAGAGC
CATGTCGTTTATCtgtctgaATGAGTGTTATCAGAAGCCCCAGACACATT
TTCAGACaattatttGACCAAGAATCGTGGACTTTCACTTATTTATTGGC
ATGCTTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAGG
TGGAAAGAGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAAATAC
GCAATCAACACTCATTGTCATGCCGACCATATAACCAGTACCggcatttt
gaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCAA
AAGCTGATATATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAGG
GAAATAGAATGCATTTCCACGCCTGGACATACAGATGgttgtATGACATT
GGTAAATTATGAAGAACGAATTGCAATGACAGGGGACACACTTCTGATAC
GAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATccatcaatttt
tcatatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGTTTATCtgt
ctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013643XLOC_013643Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024309-proteinTCONS_00024309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024309-exon-sc0000487-1491911889:218542..219014TCONS_00024309-exon-sc0000487-1491911889:218542..219014Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:218542..219014TCONS_00024309-exon-sc0000487-1510915933:218542..219014Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:218542..219014TCONS_00024309-exon-sc0000487-1575043694:218542..219014Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1491911889:221705..221794TCONS_00024309-exon-sc0000487-1491911889:221705..221794Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:221705..221794TCONS_00024309-exon-sc0000487-1510915933:221705..221794Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:221705..221794TCONS_00024309-exon-sc0000487-1575043694:221705..221794Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1491911889:223220..223274TCONS_00024309-exon-sc0000487-1491911889:223220..223274Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:223220..223274TCONS_00024309-exon-sc0000487-1510915933:223220..223274Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:223220..223274TCONS_00024309-exon-sc0000487-1575043694:223220..223274Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1491911889:225037..225182TCONS_00024309-exon-sc0000487-1491911889:225037..225182Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:225037..225182TCONS_00024309-exon-sc0000487-1510915933:225037..225182Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:225037..225182TCONS_00024309-exon-sc0000487-1575043694:225037..225182Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1491911889:225761..225797TCONS_00024309-exon-sc0000487-1491911889:225761..225797Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:225761..225797TCONS_00024309-exon-sc0000487-1510915933:225761..225797Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:225761..225797TCONS_00024309-exon-sc0000487-1575043694:225761..225797Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1491911889:229587..229801TCONS_00024309-exon-sc0000487-1491911889:229587..229801Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1510915933:229587..229801TCONS_00024309-exon-sc0000487-1510915933:229587..229801Clytia hemisphaericaexon
TCONS_00024309-exon-sc0000487-1575043694:229587..229801TCONS_00024309-exon-sc0000487-1575043694:229587..229801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:218542..229801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1307	11.9936	21.3909	24.0135	9.55734	6.11454	7.10523	8.54845	10.2669	7.47188	12.4511	12.1465	16.7524	22.2646	13.6156	10.8891	16.6535	12.9124	17.4685	16.5044	22.355	21.4163	12.9841	14.8406	10.7873	11.5068	19.5722	24.9309	17.4956	19.6011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
Blast
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BLAST of TCONS_00024309 vs. Swiss-Prot (Human)
Match: ETHE1 (Persulfide dioxygenase ETHE1, mitochondrial OS=Homo sapiens GN=ETHE1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.385e-41
Identity = 78/146 (53.42%), Postives = 104/146 (71.23%), Query Frame = 3 
Query:  462 IFRQLFDQESWTFTYLLACLKKREAILVDPVDTQVERXXXXXXXXXXXXXYAINTHCHADHITSTGILKNK-TNCKSMISLNSGAKADILLNDGDRISYGDREIECISTPGHTDGCMTLVNYEERIAMTGDTLLIRACGRTDFQQG 896
            + RQ+F+  S TFTYLL   + REA+L+DPV     RD +L++EL L L YA+NTHCHADHIT +G+L++    C+S+IS  SGA+AD+ + DGD I +G   +E  ++PGHT GC+T V  +  +A TGD LLIR CGRTDFQQG
Sbjct:   24 LLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQG 169
The following BLAST results are available for this feature:
BLAST of TCONS_00024309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETHE12.385e-4153.42Persulfide dioxygenase ETHE1, mitochondrial OS=Hom... [more]
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