XLOC_013643 (gene) - C. hemisphaerica

Overview
NameXLOC_013643
Unique NameXLOC_013643
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000487:218542..229801+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013643 ID=XLOC_013643|Name=XLOC_013643|organism=Clytia hemisphaerica|type=gene|length=11260bp|location=Sequence derived from alignment at sc0000487:218542..229801+ (Clytia hemisphaerica)
cattgagtttaaagcccgaagggctagagttcaatctctaacctttctca
ggcaagaaaaagtgaagccttaaaaaatgcgccgcacttttgacgacaga
ttgaatctagcaattcctttgtttacgattgatatttttttcgaaattta
gcggtaaattttagtttcaatctgttatttgtgtaaaaaccaggcgagcc
gcgcaactttggtaggatttgtccCGTTTTCAAAGATGACGTTATCTTAG
TGATcaaccactttcgctttcgatctcaacgaaaaaatatttttttccaa
agaaatGTGAAGGAGAGTTTGGAGGTGTTTGTTGTGTATTTAGACATTAG
AGTTTGCTGGAAAGTGGGTTTgcaaacttttatttttgtatGCCTCTGTT
GCAGCATTTATCTTCGTTTAATTTGTGATAAAAAATGAGTGTTATCAGAA
GCCCCAGACACATTTTCAGACaagtaagtttttttaaattttaaaccaga
cccgatcaatcgaacttgtcgaaccaatcgaacaatcgaactaatcgaac
tccatcgaacaattaaagttcgattaaaaaaattaatttaactctaagat
ttttttaaagattgtgagtgttcaattaagttcgatcaatgggtttcggt
tcgatcagttcgataaaccaattttgttcgacaagtttgtgctgctccgc
cactgTATATTCAGGTATATTAcctagcttcttttcaaagccaaattcgt
aATGTAAATcaggaaattacttccgataaccgATTACACACTTTTTCTGT
AtatatccttttagcgccagaggcggtttgttggggcgtagtatATATTC
CGCCACTTCGGCCGCGCGcaaaatcgcaacagaggggctacagACTTTAT
TCCGgttagacaaatatccgggtacaataaacgtcaagctgttaagtcgG
GGAACTGTCAaaatggcaatcgcgtgccaggacaaagtttttgcaagcga
gggaagatatatgaggatttaatatcatcgaactaatcaaactttttact
gaccgaactaatcgaactgctattgcttcaaaaattgtgagtgtttgaTT
AGGttccattaatttttttaattgaactttaatcgttcgatggagttcga
ttagttcgattgttcgattggttcgacaagttcgattgttCGGGTCTGGT
TTAAAGAGCACTAGAGGCAGGGAAACTATCCAGGATCCTACCATTCTAAg
ccagccagccagccagcaaaaactaaatgacacttgtaaacttaagtttc
ttaccatttccattaaaaacaaccaaaaacattactatatacttcccaaa
gccgaagaccaaaacaaattatatatCTCCCAAGAAGATTATGGTGCCCT
TTTTTGTTGTAGATGGACTGTGgtttaaaagttttttggaGGTACGTCGT
GGTGGCAAGGTGTTTTTTTAtgaggttgaagtttggaaATTTCCgctgtc
aacattcaatttcttatacacaacacacTTTTTGCGTCTCTCCTCACAAC
TTGAAATGTCATAGCGACATAATTGGTAATTAAAAATAGAAGAATCTAGC
TCTCACgacaagaaaatcttttaaaagtccATCTTGGGAATTGGATGACT
GATTTTTGATTgagaatgcaattaaaatgctaaGAAAATTCAATTAATGA
GGGAAGTAATAAGGGACAAACCCTTAGGACCCATGACAACCCTATATAAT
gcaattgaattgaattgaattgaattgaatatattttcgctgcaacacag
caggataaccccttacaaaaaaaaatagatttctctaatacaatggggaa
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Natacaatggggaacctagaagaaactgaaaaattattacagaactaaag
aaaaaatgaataaacgattatcataatattaatagtgacaACAAAATAGT
GAATatatataagaaatatttttacttttattttatgacaatttctttga
gtagatttatctataaagttcttcctgttacaccacccaccactcccacc
ctgggaaaacacactaagttCACGCACACACAATACAcgcacacacagac
acacacacacaaagattattcgtcttcaactttgtatttgtctaaataga
attttgtagctaaagattttagttcatcagtatcaaggttgtgaaaatca
gtgtcaggatgatttattagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGTTTAGAAGGATGTGAATTGGAACATAGTGACG
AAGTTTGGatattgccccatttgcccttcTCAATGTAGCAGCAACGAAAG
AAGTATGGACGCAACGCAACAAAACCTGGTCCACTGGGTCCATTTCAAAA
CATGAATGAAGTATTTAAAGGCTATATATAGCTATCAACTTAAAAGTCCT
CTATATCGTTTTATGAGAGCTTTCGGTCGGTTTATAGTTTTTAGGTTTTA
TTGACTTTGGAATTTTGTCAAGCTTTTGGGGTCAAGGGATTTTGAAATGG
ACCAGGTTTGGTTGTGTCGCATGAAAGATGTCACACACCTCCTCAAGAAT
TTACCCCTGCAAAATTATGTTTTATTCTGGCGCAATCTTCAGGCAATGCA
GTgtattcaattttaaattttatttcaatcagttgaagttaaattttatt
ttatttttttcagttatttGACCAAGAATCGTGGACTTTCACTTATTTAT
TGGCATGCTTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACT
CAGGTATATGAATGTATTTCAGAGGGGAACCTAAGGGGGATTtcggtaca
cattttttttacctaaaaactATCGAACAATCTCTCTTCTTTCAAATAtc
agcaaaatctttgaaaaaatcctTCAGTTAAATCTGTTTTGGTTGACTTT
CGCTTACTTATTGGCATGTCTGAAAAAACGTGAAGCTGTTCTCGTCGACC
CAGTGGATACTCAGGTATATGAATTGTATTCCAGAGGGGAACCTAAGGGG
GATTtcggtacacatttttttacctaaaaactATCGAACAATCTCTCTTC
TTTCAAATAtcagcaaaatctttgaaaaaatcctTCAGTTAAATCTGTTT
TGGTTGACTTTCGCTTACTTATTGGCATGTCTGAAAAAACGTGAAGCTAT
TCTCGTCGACCCAGTGGATACTCAGGTATATGAATTGTATGGCAGAGGGG
AAACTAAGGGGGATTtcggtacacatttttttacctaaaaactATCGAAC
AATCTCTCTTCTTTCAAATAtcagcaaaatctttgaaaaaatcctTCAGT
TAAATCTGTTTTGGTTGACTTTCGCTTACTTATTGGCATGTCTGAAAAAA
CGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAGGTATATGAATTGTA
TGGTAGAGGGGGACCTAGGTATCTGGGAAAATGAAGGGTACGGGTATATA
CTGcccttaagggtcccttttttggATATTAAAAAACCTGCTAAAGATGG
TCAAAACCATAAAATCtaattacactctttttttaaaggcataacgttta
taagcatacttatgCTCGAATTCGGTAAAAAgtaagcataatgctaagca
tacctccaagctgaaatgcaaaaagaaaaattgcagcTTTTCTACAAGGC
TGACCTTTTAAGGGTCAGACCAAAGATTTTTGCCCACGGCgcaaaattac
aaagaaaacttttcattctttgagccgaatcaatgttccgacttaaaaat
tcgaaattttcatcttcacccaaagaaaatcaacaaatcaaaGTCTATAA
AgcataaacatatttttttaattttgctaaACATATTGAGCCTTGACCCG
AATTTCCAAGGTCTATCCAAGTTATTAATAAATGGGTCGCTTTCGGAGCC
TTTTTTCTTCCATAAATATAGTTTTAAAACGTGAATTACGCCACCATTCT
TGGATGTCAAATTGATTCCAAACGTTAAGGggcattttttacaatatagt
cccaaacaaaaaaaagtgtTCTGCCAGGTTCCCAAATTTACCATTCGTAt
ttgacagggtccacttttcaaactccagcgagTGGTACCTCCCCTTCGGC
TGGCAAGGTCAGGGCTAAGATTAATCCATGATGAAATGTAAAATATTAAA
AGCATCGTTACTTCTTCTGATTTTTCAGGTGGAAAGAGACTTGAAACTAA
TGGAAGAACTGAAACTCGATTTGAAATACGCAAGTAGGTATCTTAAAGCT
AGATTCCTATAAAAAATAACTTCTGAATCTCTATGAATAAAAACAgttga
aatttcaaaagcttTGCAGTCgcgaaattgtttttttttaaggaatcATT
AAAGCCAGTATATTtgttcatgatatgcaccactggagagtcttctgaaa
acttttaaaattttccactcagtacatcacttaaacaatagaaaaagtga
cgtattgggtggaacaaaaacagaaaagttgtataaattcgtgaagtcat
tgcagtggtgcatatcatgaattcttgaGTCTGCTaaaaaatagtcgaac
gtgcgcaacgcactgggctcaacttcagtagcttCAAGTTAtttataggc
ccaattgtagaccccaagATATTCATCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggtactagggtt
gcgagctgacgggggggccgcccgactttcgaactttgtcCCTTAccgga
ctaaaaaggagaaaacaaaggaaaacttTGAGAGAATTGAGAGAAAACTT
TAGCGGGACAAACTTGACCAACTTTAACCAAATTTcaatctttcaggggg
taaaaagtggaaattttcctattttttccgacccttagtgggactttgga
aatccaaaaaaggtacccttaagggcggcacataccataccctccatttg
cctaagtactcccggacattgagtttaaagcccgaagggctagagttcaa
tctctaatctaagcaagaaaaagtgaagccttaaaaaatgcgccgtattt
ttgacgacggattgaatctagcaattcctttgtttacgattgatattttt
ttcgaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagt
ttcaatctgtcatttgtgtaaaaaccaggcgagccgctcaaggccgcgca
actttggtaggatttgttggcttcaaatcctaccaagaagattgatttct
agcccttcgggtttataCTTCATTGCCCCCGGGCTCTCTGTTCATTGAAA
TGTTATATTTAAGTGAAGACATTCCAGTATTGCATCGAACCATTAAGATA
CGTCACGAGCTatctcttttgttttgatgattggttgaataaCTGCAATC
TTTATGCAAGCTCAGCGTTTTTGGagcagcgattcagacctcggaaaaca
taatgtcaatctggctttaaaggttttatttttacataagtcttctgttt
catatcagacacatatttcatatcaggacagtgtctgtgtattgttatat
tatgctgatgtaagcaaaaaaaatgtttttcttttcctctttctgaccaa
tcttgctccacacccgTGGCAATCCAATGGGAAAAAGCTTGTGAtttgtg
aattgaaattgattagaaagcaaacgatatcactcttatttaaaaacaaa
acctttattaAACTCCAGTGGCAcatccccgtcggccgtcaaggtcagtg
gcCATCCGGGTTAATGTCtaaaaaatttactttcattTCTTTCAGTCAAC
ACTCATTGTCATGCCGACCATATAACCAGTACCggcattttgaaaaacaa
aaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCAAAAGCTGATA
TATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAGGGTAAGCCAA
CTAATTTCTGAATCAAAAATTGTATTGGGCATCGGGACATCTCATCGACA
TCATGGCTAGAATTTATTCCGCCCCTTGCCTGAGAATGAAGTGGCTATAA
GGTTGAGCAGTCGGTGGCACCAATGAATTCCTTTTCTCAAACTATATACG
AAATTCTAAActttgctttttaatgaattttgatGACGCTAAGTCAAGTT
AATTGGTAGACTAGAGGATATTGTCTTCTTTATATTTTACCTTAGCTTTC
AATAAATTTAATTACTGTGTcacaaaaatctgctctcctacaaaaatttt
gccccccccccttgtctacgctactgagaGGGtatgttgtcattgtcttt
tctgatttgatatttttcatgaaGCAAGGGGAGAGAACACTATGTCCTGG
CAGTCCTGGCAATGAAAACAATCTGCAGAATCCTATATAGATTTAAATGA
ATGAATTTAGCGATACCTCCTTTAACTAAAGcccaaataaataataaaat
taataataatttaataataATATGTCACGTgtattaattttaattttttt
cttctccatTTTATTTAAGGAAATAGAATGCATTTCCACGCCTGGACATA
CAGATGGTAAGATGGGACGAATTTAATATAATATTCtatgcccagctggc
acacaacgttattggTCAGCCtcggtgacccttcaaatcggttccgcgat
ttttttcccgctggtgAAGCTCtggatcaaaattttgaaacttttaaaac
cGATTTCCGAAATCCGATTACCGATtaccgatctcactttgatttctaaa
ccttcttccgatcgggttaactttttgcgaacttttagcgtgtgttgttt
ttaacgatcataatgtggtgtttcaagattgCGGCTCAAGCCGATAAAGT
TAAAGTGTTgttccaaagtatttccagtgtgaATCTGTTtgtctgttgca
agcttcaatttctgtcatttatttttctaactcggcaaatcaaacacatt
attttcatcaaggggattttttttctacttcttttgaaggtttaaagccg
tttgctcaagtttttgtttatgttgaattttctgtagctagtttttgcaa
taaaaacatattattcttgtttgcctctagaggggggattgatggtgtta
taatgctattggaatttgataaagtatacaaaagtacagctactgtctaa
atttgataaagactagATGCAATcgtgtttttttggacttggacgttgGC
TTCAGACGACCCTGCCGATACACCATACATTCCGGCGTTATCTTTTGTCT
GGTAttttcttcattaaattttcaaaagtgcGCACCGGACTACACCGGAC
TGTCTGGTAAATTTTTCTCNcatgcatattgtaataattatgcatggttt
tatcattgtttttctgctggactacataattattcaacagggtggcctct
ttgaaaaaaggtctatgaatGGTGACAACAGTTATTACATATCTTTCNTC
GGAGGAAACAAAGTACACCAGACACTACACCGGAACTTTTGTCCAGTGAT
TTATCCATATATTTGCGCACCTGACAAACTGCACCGGAATATCCTGTGTA
TCGGCAAGGTTGTGGCTTCAGTCATATTATATAAGGCGTATCgcaaaaaa
ttatcgaaaatatttttctgttaaagaagcagctacatcttgttgaaagg
gaatcggCGTGGACTTGTCCGAAtttaaaaattgagaaaccgtcaaccgt
ggataaactggttttcggtttactctccctTAGCacgcggctcgctactt
cgatttgaaaacttgtaaacacagagcgNNNNNNNNNNNNNNNNNNNNNN
NNACTACTGTAGCTTAAAATTGTTAATGGCGACCAGTTACAATTTCTGGT
AGGAGCTGCAGAGAATTGTGACAACAAGGCtcaaaataacaatttcaagt
gggtcagacaaaatgtccgatcagggttgctttagcttgaaaattatgat
ttttgggtcggacatgaagccATTTGGGACGGACattgtccgatgtccga
ccgttatttcgagccctgtgaCAAGGTGTTATATATTGGAATTTGGTAAA
GTATACAGACTAAAATTGTTCTgctttagaaatttatgaaggataaaaat
atttctcacaAAGTTATATATATACTGAAGATGTAATATCAGTCATTTTA
AGGAAAGGAAAAGATATGATATATAAGCAGCTTAAAAAGATCTAAATTAA
AAAGACAagaatgtttttgtatttttgaagattatacattttttgattta
ttatttttttgaaatcattcCAATATCAGATGAAAAATACAATAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAA
GAAGCTGCAGAGAGTTACGACAAAGTGTTATTGGGgttttatcaagtaaa
caaaaaaagtacagtttctatgtaatgaaaactaaaaatggTTCTCTCTG
CACTAAAATTACGGCATGTATCTTTATTTTGGGTTTgactttttggcaat
tttcttattttttgtagtataacactttggtcagatatggatattgtcta
cacccaacagaaaaaatgtattataactGACTAAAATGAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACATCCCAAACGAGCGAGGTTCCTGGACTTTTCAACCGGCAGCTAAT
TGCAATTGTATCGAACGCTGATCTAACATTTGCTCGcatctcatcaaaat
tattcCTTTCACCCCTTTGACCCTCTAACCCCTTTGACCCTCTAACCCTC
TTAGCTcttttggctgaccttccagcctcggctggtttatttcaaTGTTC
ATTTAATGTCACAAGGTCCAtataacattagatgaacgataaaacaacgt
tgtgtgccggctgggcgGGAAGACCttcagaaaaatatgggtcggtcggt
cggtataataaaaataagttttttaaaACCTTTGACTCGGAAAATCAAGA
TCTAAGATATTTATGACTTTTTGATGaagctttttcttctttatcgaCGA
ACAAAGTTCGTGATATTTTCttagtaattttttaaattcatcttaTTTCT
AggataaattaataaattttcaCCGATTTCAGTTTTTCAGTAAAAAGCCT
ATACAGTCCATCCTTCAACTTTGCAaattcaatgttattttttttcgttt
ttattacGTTTTTGGACATTACtgtagatgaacgttgaaacaacgctgtg
tgTTAGCTGAGAAGGTTGGCTCTAATAGGTtacacacaatgttgtttcga
cgttcatctaatgtaACTCGAAAGGTCACAAGGAACAATTAATTTTACTT
ATTACGATTACTTCCTGTATTTCCTTATCGGCCCCTTTTACGCGCCGGCC
CTCATTACGCCACatcctaattttgggcttacgccaattagggctaCTAA
AAACgccaacatttttaaaaatggctACTTATACTTCgaattagtaaata
atgactaaaatttaaATTAACGCCGCCTTTAGGTTAAAATTGCACAATCT
TGGCCCTTTTAACACCGGCCCTTTTAACACCGGCCTTtcttacgccacga
gcccaaacttaacgccaataagggccttTGTAAAAAGGGCCCATAAAGTA
TTCTATAGgaaactcttttcgctagaggatgggCAGAAGCCTAACAGAAA
TGGGAAACAgaaaacacaaaataatgaataattttttttttaaaggttgt
ATGACATTGGTAAATTATGAAGAACGAATTGCAATGACAGGGGACACACT
TCTGATACGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATcca
tcaatttttcatatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGT
TTATCtgtctgatattccgatggtggattggcggccgcccttGCTAAAGC
TCTAAACGCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00024309TCONS_00024309Clytia hemisphaericatranscript
TCONS_00024310TCONS_00024310Clytia hemisphaericatranscript
TCONS_00024311TCONS_00024311Clytia hemisphaericatranscript
TCONS_00024312TCONS_00024312Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00024309-proteinTCONS_00024309-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:218542..229801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.41	11.99	21.39	24.67	9.93	9.2	12.76	13.22	15.09	9.64	12.45	15.34	21.64	28.46	17.02	14.46	22.16	20.46	28.93	20.07	22.36	21.42	12.98	14.84	24.42	18.14	19.57	24.93	17.5	19.61