TCONS_00024312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024312
Unique NameTCONS_00024312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024312 ID=TCONS_00024312|Name=TCONS_00024312|organism=Clytia hemisphaerica|type=transcript|length=503bp
CATGTCTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAG
GTGGAAAGAGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAAATA
CGCAATCAACACTCATTGTCATGCCGACCATATAACCAGTACCggcattt
tgaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCA
AAAGCTGATATATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAG
GGAAATAGAATGCATTTCCACGCCTGGACATACAGATGgttgtATGACAT
TGGTAAATTATGAAGAACGAATTGCAATGACAGGGGACACACTTCTGATA
CGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATccatcaattt
ttcatatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGTTTATCtg
tctgatattccgatggtggattggcggccgcccttGCTAAAGCTCTAAAC
GCT
Run BLAST on NCBI

transcript from alignment at sc0000487:222378..229801+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024312 ID=TCONS_00024312|Name=TCONS_00024312|organism=Clytia hemisphaerica|type=transcript|length=7424bp|location=Sequence derived from alignment at sc0000487:222378..229801+ (Clytia hemisphaerica)
CATGTCTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAG
GTATATGAATTGTATGGTAGAGGGGGACCTAGGTATCTGGGAAAATGAAG
GGTACGGGTATATACTGcccttaagggtcccttttttggATATTAAAAAA
CCTGCTAAAGATGGTCAAAACCATAAAATCtaattacactctttttttaa
aggcataacgtttataagcatacttatgCTCGAATTCGGTAAAAAgtaag
cataatgctaagcatacctccaagctgaaatgcaaaaagaaaaattgcag
cTTTTCTACAAGGCTGACCTTTTAAGGGTCAGACCAAAGATTTTTGCCCA
CGGCgcaaaattacaaagaaaacttttcattctttgagccgaatcaatgt
tccgacttaaaaattcgaaattttcatcttcacccaaagaaaatcaacaa
atcaaaGTCTATAAAgcataaacatatttttttaattttgctaaACATAT
TGAGCCTTGACCCGAATTTCCAAGGTCTATCCAAGTTATTAATAAATGGG
TCGCTTTCGGAGCCTTTTTTCTTCCATAAATATAGTTTTAAAACGTGAAT
TACGCCACCATTCTTGGATGTCAAATTGATTCCAAACGTTAAGGggcatt
ttttacaatatagtcccaaacaaaaaaaagtgtTCTGCCAGGTTCCCAAA
TTTACCATTCGTAtttgacagggtccacttttcaaactccagcgagTGGT
ACCTCCCCTTCGGCTGGCAAGGTCAGGGCTAAGATTAATCCATGATGAAA
TGTAAAATATTAAAAGCATCGTTACTTCTTCTGATTTTTCAGGTGGAAAG
AGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAAATACGCAAGTA
GGTATCTTAAAGCTAGATTCCTATAAAAAATAACTTCTGAATCTCTATGA
ATAAAAACAgttgaaatttcaaaagcttTGCAGTCgcgaaattgtttttt
tttaaggaatcATTAAAGCCAGTATATTtgttcatgatatgcaccactgg
agagtcttctgaaaacttttaaaattttccactcagtacatcacttaaac
aatagaaaaagtgacgtattgggtggaacaaaaacagaaaagttgtataa
attcgtgaagtcattgcagtggtgcatatcatgaattcttgaGTCTGCTa
aaaaatagtcgaacgtgcgcaacgcactgggctcaacttcagtagcttCA
AGTTAtttataggcccaattgtagaccccaagATATTCATCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
ggggtactagggttgcgagctgacgggggggccgcccgactttcgaactt
tgtcCCTTAccggactaaaaaggagaaaacaaaggaaaacttTGAGAGAA
TTGAGAGAAAACTTTAGCGGGACAAACTTGACCAACTTTAACCAAATTTc
aatctttcagggggtaaaaagtggaaattttcctattttttccgaccctt
agtgggactttggaaatccaaaaaaggtacccttaagggcggcacatacc
ataccctccatttgcctaagtactcccggacattgagtttaaagcccgaa
gggctagagttcaatctctaatctaagcaagaaaaagtgaagccttaaaa
aatgcgccgtatttttgacgacggattgaatctagcaattcctttgttta
cgattgatatttttttcgaaattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNagtttcaatctgtcatttgtgtaaaaaccaggcgagccg
ctcaaggccgcgcaactttggtaggatttgttggcttcaaatcctaccaa
gaagattgatttctagcccttcgggtttataCTTCATTGCCCCCGGGCTC
TCTGTTCATTGAAATGTTATATTTAAGTGAAGACATTCCAGTATTGCATC
GAACCATTAAGATACGTCACGAGCTatctcttttgttttgatgattggtt
gaataaCTGCAATCTTTATGCAAGCTCAGCGTTTTTGGagcagcgattca
gacctcggaaaacataatgtcaatctggctttaaaggttttatttttaca
taagtcttctgtttcatatcagacacatatttcatatcaggacagtgtct
gtgtattgttatattatgctgatgtaagcaaaaaaaatgtttttcttttc
ctctttctgaccaatcttgctccacacccgTGGCAATCCAATGGGAAAAA
GCTTGTGAtttgtgaattgaaattgattagaaagcaaacgatatcactct
tatttaaaaacaaaacctttattaAACTCCAGTGGCAcatccccgtcggc
cgtcaaggtcagtggcCATCCGGGTTAATGTCtaaaaaatttactttcat
tTCTTTCAGTCAACACTCATTGTCATGCCGACCATATAACCAGTACCggc
attttgaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGG
TGCAAAAGCTGATATATTACTCAATGATGGTGATCGAATTTCCTATGGTG
ATAGGGTAAGCCAACTAATTTCTGAATCAAAAATTGTATTGGGCATCGGG
ACATCTCATCGACATCATGGCTAGAATTTATTCCGCCCCTTGCCTGAGAA
TGAAGTGGCTATAAGGTTGAGCAGTCGGTGGCACCAATGAATTCCTTTTC
TCAAACTATATACGAAATTCTAAActttgctttttaatgaattttgatGA
CGCTAAGTCAAGTTAATTGGTAGACTAGAGGATATTGTCTTCTTTATATT
TTACCTTAGCTTTCAATAAATTTAATTACTGTGTcacaaaaatctgctct
cctacaaaaattttgccccccccccttgtctacgctactgagaGGGtatg
ttgtcattgtcttttctgatttgatatttttcatgaaGCAAGGGGAGAGA
ACACTATGTCCTGGCAGTCCTGGCAATGAAAACAATCTGCAGAATCCTAT
ATAGATTTAAATGAATGAATTTAGCGATACCTCCTTTAACTAAAGcccaa
ataaataataaaattaataataatttaataataATATGTCACGTgtatta
attttaatttttttcttctccatTTTATTTAAGGAAATAGAATGCATTTC
CACGCCTGGACATACAGATGGTAAGATGGGACGAATTTAATATAATATTC
tatgcccagctggcacacaacgttattggTCAGCCtcggtgacccttcaa
atcggttccgcgatttttttcccgctggtgAAGCTCtggatcaaaatttt
gaaacttttaaaaccGATTTCCGAAATCCGATTACCGATtaccgatctca
ctttgatttctaaaccttcttccgatcgggttaactttttgcgaactttt
agcgtgtgttgtttttaacgatcataatgtggtgtttcaagattgCGGCT
CAAGCCGATAAAGTTAAAGTGTTgttccaaagtatttccagtgtgaATCT
GTTtgtctgttgcaagcttcaatttctgtcatttatttttctaactcggc
aaatcaaacacattattttcatcaaggggattttttttctacttcttttg
aaggtttaaagccgtttgctcaagtttttgtttatgttgaattttctgta
gctagtttttgcaataaaaacatattattcttgtttgcctctagaggggg
gattgatggtgttataatgctattggaatttgataaagtatacaaaagta
cagctactgtctaaatttgataaagactagATGCAATcgtgtttttttgg
acttggacgttgGCTTCAGACGACCCTGCCGATACACCATACATTCCGGC
GTTATCTTTTGTCTGGTAttttcttcattaaattttcaaaagtgcGCACC
GGACTACACCGGACTGTCTGGTAAATTTTTCTCNcatgcatattgtaata
attatgcatggttttatcattgtttttctgctggactacataattattca
acagggtggcctctttgaaaaaaggtctatgaatGGTGACAACAGTTATT
ACATATCTTTCNTCGGAGGAAACAAAGTACACCAGACACTACACCGGAAC
TTTTGTCCAGTGATTTATCCATATATTTGCGCACCTGACAAACTGCACCG
GAATATCCTGTGTATCGGCAAGGTTGTGGCTTCAGTCATATTATATAAGG
CGTATCgcaaaaaattatcgaaaatatttttctgttaaagaagcagctac
atcttgttgaaagggaatcggCGTGGACTTGTCCGAAtttaaaaattgag
aaaccgtcaaccgtggataaactggttttcggtttactctccctTAGCac
gcggctcgctacttcgatttgaaaacttgtaaacacagagcgNNNNNNNN
NNNNNNNNNNNNNNNNACTACTGTAGCTTAAAATTGTTAATGGCGACCAG
TTACAATTTCTGGTAGGAGCTGCAGAGAATTGTGACAACAAGGCtcaaaa
taacaatttcaagtgggtcagacaaaatgtccgatcagggttgctttagc
ttgaaaattatgatttttgggtcggacatgaagccATTTGGGACGGACat
tgtccgatgtccgaccgttatttcgagccctgtgaCAAGGTGTTATATAT
TGGAATTTGGTAAAGTATACAGACTAAAATTGTTCTgctttagaaattta
tgaaggataaaaatatttctcacaAAGTTATATATATACTGAAGATGTAA
TATCAGTCATTTTAAGGAAAGGAAAAGATATGATATATAAGCAGCTTAAA
AAGATCTAAATTAAAAAGACAagaatgtttttgtatttttgaagattata
cattttttgatttattatttttttgaaatcattcCAATATCAGATGAAAA
ATACAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTAGAAGAAGCTGCAGAGAGTTACGACAAAGTGTTATTGGGg
ttttatcaagtaaacaaaaaaagtacagtttctatgtaatgaaaactaaa
aatggTTCTCTCTGCACTAAAATTACGGCATGTATCTTTATTTTGGGTTT
gactttttggcaattttcttattttttgtagtataacactttggtcagat
atggatattgtctacacccaacagaaaaaatgtattataactGACTAAAA
TGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACATCCCAAACGAGCGAGGTTCCTGGACTTTTC
AACCGGCAGCTAATTGCAATTGTATCGAACGCTGATCTAACATTTGCTCG
catctcatcaaaattattcCTTTCACCCCTTTGACCCTCTAACCCCTTTG
ACCCTCTAACCCTCTTAGCTcttttggctgaccttccagcctcggctggt
ttatttcaaTGTTCATTTAATGTCACAAGGTCCAtataacattagatgaa
cgataaaacaacgttgtgtgccggctgggcgGGAAGACCttcagaaaaat
atgggtcggtcggtcggtataataaaaataagttttttaaaACCTTTGAC
TCGGAAAATCAAGATCTAAGATATTTATGACTTTTTGATGaagctttttc
ttctttatcgaCGAACAAAGTTCGTGATATTTTCttagtaattttttaaa
ttcatcttaTTTCTAggataaattaataaattttcaCCGATTTCAGTTTT
TCAGTAAAAAGCCTATACAGTCCATCCTTCAACTTTGCAaattcaatgtt
attttttttcgtttttattacGTTTTTGGACATTACtgtagatgaacgtt
gaaacaacgctgtgtgTTAGCTGAGAAGGTTGGCTCTAATAGGTtacaca
caatgttgtttcgacgttcatctaatgtaACTCGAAAGGTCACAAGGAAC
AATTAATTTTACTTATTACGATTACTTCCTGTATTTCCTTATCGGCCCCT
TTTACGCGCCGGCCCTCATTACGCCACatcctaattttgggcttacgcca
attagggctaCTAAAAACgccaacatttttaaaaatggctACTTATACTT
CgaattagtaaataatgactaaaatttaaATTAACGCCGCCTTTAGGTTA
AAATTGCACAATCTTGGCCCTTTTAACACCGGCCCTTTTAACACCGGCCT
TtcttacgccacgagcccaaacttaacgccaataagggccttTGTAAAAA
GGGCCCATAAAGTATTCTATAGgaaactcttttcgctagaggatgggCAG
AAGCCTAACAGAAATGGGAAACAgaaaacacaaaataatgaataattttt
tttttaaaggttgtATGACATTGGTAAATTATGAAGAACGAATTGCAATG
ACAGGGGACACACTTCTGATACGAGCTTGCGGTAGAACTGATTTTCAACA
AGGTCTGTTATccatcaatttttcatatttttatgtacaATTCTTTTTCA
AAGAGCCATGTCGTTTATCtgtctgatattccgatggtggattggcggcc
gcccttGCTAAAGCTCTAAACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013643XLOC_013643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024312-exon-sc0000487-1491911889:222378..222427TCONS_00024312-exon-sc0000487-1491911889:222378..222427Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1510915933:222378..222427TCONS_00024312-exon-sc0000487-1510915933:222378..222427Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1575043694:222378..222427TCONS_00024312-exon-sc0000487-1575043694:222378..222427Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1491911889:223220..223274TCONS_00024312-exon-sc0000487-1491911889:223220..223274Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1510915933:223220..223274TCONS_00024312-exon-sc0000487-1510915933:223220..223274Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1575043694:223220..223274TCONS_00024312-exon-sc0000487-1575043694:223220..223274Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1491911889:225037..225182TCONS_00024312-exon-sc0000487-1491911889:225037..225182Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1510915933:225037..225182TCONS_00024312-exon-sc0000487-1510915933:225037..225182Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1575043694:225037..225182TCONS_00024312-exon-sc0000487-1575043694:225037..225182Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1491911889:225761..225797TCONS_00024312-exon-sc0000487-1491911889:225761..225797Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1510915933:225761..225797TCONS_00024312-exon-sc0000487-1510915933:225761..225797Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1575043694:225761..225797TCONS_00024312-exon-sc0000487-1575043694:225761..225797Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1491911889:229587..229801TCONS_00024312-exon-sc0000487-1491911889:229587..229801Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1510915933:229587..229801TCONS_00024312-exon-sc0000487-1510915933:229587..229801Clytia hemisphaericaexon
TCONS_00024312-exon-sc0000487-1575043694:229587..229801TCONS_00024312-exon-sc0000487-1575043694:229587..229801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:222378..229801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00667573	0	0	0.327172	0.183884	1.54373	2.82497	2.33355	2.4103	1.08382	1.2613e-08	1.59912	2.44572	3.09764	1.70217	1.78629	0.0171103	3.77162	5.73185	1.78231	0	1.9044e-06	0	0	6.81616	3.31435	0	0	0	0.00295929
Blast
[Close]
BLAST of TCONS_00024312 vs. Swiss-Prot (Human)
Match: ETHE1 (Persulfide dioxygenase ETHE1, mitochondrial OS=Homo sapiens GN=ETHE1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.813e-36
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 3 
Query:    9 KKREAILVDPVDTQVERXXXXXXXXXXXXXYAINTHCHADHITSTGILKNK-TNCKSMISLNSGAKADILLNDGDRISYGDREIECISTPGHTDGCMTLVNYEERIAMTGDTLLIRACGRTDFQQG 383
            + REA+L+DPV     RD +L++EL L L YA+NTHCHADHIT +G+L++    C+S+IS  SGA+AD+ + DGD I +G   +E  ++PGHT GC+T V  +  +A TGD LLIR CGRTDFQQG
Sbjct:   44 ESREAVLIDPVLETAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQG 169
The following BLAST results are available for this feature:
BLAST of TCONS_00024312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETHE13.813e-3653.97Persulfide dioxygenase ETHE1, mitochondrial OS=Hom... [more]
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