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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023859 ID=TCONS_00023859|Name=TCONS_00023859|organism=Clytia hemisphaerica|type=transcript|length=968bp
CTTAAAGTTGTAGGTAATAAAGAAAGATGAAATggattttgctgattcag
cttTTTTTCGTGATCATTGTTCCACATGATTGTCTCGTGTCTGTTAAAAA
AACACTGACGCAGGAGAAAGAAGCATTTTTACGCCGTCAAGAAGAATGGG
TTGATAACTATCATCACTATTTTGTACCgAGCAAGTCTTATTATTGCAAA
AAACGTGTTTGGCGAGCCTGTACTAAAGAATCATGCGGAGAGACCTGTGC
GGTTGGTCGATGTGTCGGATACAACCAATGCCAATACATCACACATAAAC
TGAAAGAAGCTACTCACACAGGTAAATGCATCCATCAGATAGACCTATCT
ACACAACAACAAGCTGAAACATCGATCAAAATGTACGGAACcgaaaataa
aaacccattcctcaaaatacaaaattgtaTTTGGAAAATCAAACTGAGTA
CTCGAAACAAAACGGAAATATCCTTCCGACATTTCAACATGACAAGCGAG
ACGACATGCACACAAAGCATGATAGCGCTTCGTAGCTTTGAAGATCGAAA
CATATTTTTCTATTGCAGTACCATTCAGCCGGTAACCGAAAGAGcattga
ttgttgatgaaaGCGAGGGTTTGATTTTGGAAGTGAATCGCGGAGACTGG
GAGCCGAGCGAAGGATTCGTTTTAAAACTGAAGTGAAGAAAGTTTAAAAT
TCGAACTACAAAACCATTCACTGCATTTTCATCGTCGTGTCAATGGAGAT
AAAGTCAACGTTAAATACATGGATGATTTTTTTACAGGAATTTGTACATA
AACTttaagaccaatttaattttaGCTAAAGTTCGGcaattattcttaat
tttcagCCTTGACAATAATTTAAGTTGATAAAGTTCCTTGAGTTAATTAA
ATTTGCGGGATAATGGTGAGGTGTATGTTTGAgccaaaactaaaaaaaac
aaactaaagaGAATTCTG Run BLAST on NCBI protein sequence of TCONS_00023859-protein >TCONS_00023859-protein ID=TCONS_00023859-protein|Name=TCONS_00023859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MKWILLIQLFFVIIVPHDCLVSVKKTLTQEKEAFLRRQEEWVDNYHHYFV
PSKSYYCKKRVWRACTKESCGETCAVGRCVGYNQCQYITHKLKEATHTGK
CIHQIDLSTQQQAETSIKMYGTENKNPFLKIQNCIWKIKLSTRNKTEISF
RHFNMTSETTCTQSMIALRSFEDRNIFFYCSTIQPVTERALIVDESEGLI
LEVNRGDWEPSEGFVLKLK Run BLAST on NCBI transcript from alignment at sc0000463:231589..234979- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023859 ID=TCONS_00023859|Name=TCONS_00023859|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at sc0000463:231589..234979- (Clytia hemisphaerica)
CTTAAAGTTGTAGGTAATAAAGAAAGATGAAATGGATTTTGCTGATTCAG
CTTTTTTTCGTGATCATTGTTCCACATGATTGTCTCGTGTCTGTTAAAAA
AACACTGACGCAGGAGAAAGAAGCATTTTTACGCCGTCAAGAAGAATGGG
TTGATAACTATCATCACTATTTTGTACCGTAAGTCATCTCAAAATTTCTC
TAGTGTGTAATACAGTAACATAGGTGTTATATGATAATGCGATAATTGTT
ACGGAATAATAAAAGTTTGTATAAATAATGTCATTCAGTTTATCTTATTT
TCATGCCCCGTTCTTTAGCTTCCTAAACTTCTTTCTCTCTAAACCCTATT
GGCATTTAGGGGCCACTCGCATATCGATGTTTCCCACGACTAATGTTTAC
AAATTGATGCAAGGGAGTGGGTGGAGGTCAGAGGCAGTGACGCTAAAAAA
ATCAATTAAAACGTCGATTTTCGGGGCTGATTGAATTCTAATTGGACTTA
GTATGTCATTTTGACGTTAGTCGTGGGANATTCTCTAGCTTCCTAAACTT
CTTTCTCTCTAAACCCTATTGGCATTTAGGGGCCACTCGCATATCGATGT
TTCCCACGACTAACGTTTACAAATTGATGCAAGGGAGTGGGTGGAGGTCA
GAGGCAGTGACGCTAAAAAAATCAATTAAAACGTCGATTTTCGGGGCTGA
TTGAATTCTAATTGGACTTAGTATGTCATTTTGACGTTAGTCGTGGGAAA
AATGGATATGCGAGTGACCTCTCAAGGGTACTATTTTTCATTTACTGTTA
AGTGTCGTACAATGTAGCCCCCTACAGAATCTTAGAATTCATTAATGAAC
CAAAAATATTTCTTTTTCGTTTTTCAGGAGCAAGTCTTATTATTGCAAAA
AACGTGTTTGGCGAGCCTGTACTAAAGGTAGGTTTTCAATTGCACCAACG
TCCATCAATAACATAAAAAGTGGTACAAGTGAGCCTGGGTACGAGATTGG
TTAGTTCAATTCGTTTATCACGATTTACAAAAGTTCGATACCTGCCCAGC
TGGCACACAACGTTGTTTTAACGTTTATCTAATGCTCAAAACGTCTCTAT
AACGTTAGATGAATGTTGAAACAACGTTGTGTACCAATTGGGATATCAAC
TCATGTTCAGACGTTGTGGTTCCGTATCGTTCGAAACGAAACGGTTCCGG
AACAAGTGTGAACGTCAAAATTGGAAACGTCAAAAAAGAAAACGTTACAA
AGCAAAAAGGTTGAAACAGTTTCGCTCCATTATTTTTTATCGGAACGGAA
CTGCTCCGTTTTCTTGCTCCTAAATGTTCCGAAACCAATATGAACACATT
CGATACGTAACGGAAATCATGTCGGAACGATACGAAACCGTAGTTTAAAT
ACGGTCTTATAGCAGTGCGGTCAGCTTTTGAAGAGACTGGTAACGAAAAC
ACAAGTGTAGAAGCGCATTTGTGAAAAATTAGCCTTTGAAGCATGATGGT
ACAAAAGACCAGTCTGTTTACCAATTCGTTTTTCAGTTTCCTATCTAGCT
AAAGGAAAGTGGACTGACCGCACTAACTTGGGTATAAAAATAACGAGTAC
TAAATTCATATTCAATTTGCTTACCGTTCTACAATTAAGAAGGAAGAATC
ACAGGTTTTCTTACAACGACATAGTGATAAATAAGTTATTTAGTCTTGCT
TTCTTAAAAAACCCTCAAAAAAGTGTCCATGTACTTTCAAAGACTTTAAT
TTTTTCTATTCAGTTTGAATTTCATTCCTTAGAATCATGCGGAGAGACCT
GTGCGGTTGGTCGATGTGTCGGATACAACCAATGCCAATACATCACACAT
AAACTGAAAGAAGCTACTCACACAGGTAATTAAAGATGAAAGCACCCGTT
TTCGTTGGGTTCAAAGATAATATTTTTGAAGTGGGAAAAACTAGAAGTGG
CCCGCGTGTTCATTTTGACTTAGCATAAAAGCTTTTTATATTTCGTTATA
ATGAATACTTTCAAAATGCTAGATCAAATCTCAATGTCTGGTTAACTCAG
CCAAAAACTCCAGTCGATGAAGTATGAGCTAACACTAGGACAAATTTCAT
CTAAGACAAACAAATGTGAAGACAGGAATTGTAGCTATTGTCTTATAATC
GATCACTTCTAACGTGATTTTTCTACAGTGATGAACGGCTTTAACCTTCC
GTATCATATCGTCCAATGTTTATCTTCAACCTTTCCAAAAACAAGAAAAA
GTGATGCCTTAAAATTTGCTCCGCATTTCGGATGACGAATTAAATCAAGT
TCTTTCTTTGTTAACGCTTTCTGATTTTTTCGAATTCTGGTAGTAAATGT
TACTTCCAATCAAGCGTTTGTAAAACCAAGCGGGCAGCACAATGTAGGCA
TCCGATCTGTATCAATTTTTACTCATTTTAGGGGTTATAAGTTTTGCCTA
TAACGTCAGTTTTTTGGCCAAAAAAACATTTGCCAGGCCTAGATGAAGGG
TCCCTCTCTCAAAAAAGTTTCAAAATCCTATCTACTTTTGAACCAATCAC
ATGCGGTTGCGCCCCCACTATTTATTTCTTGCATGGTTTTCACACAAATG
TTAGAAAATAAAATTTACCACCAATTTTCCAAAAACGTGCAACGCAAAAA
CAGCTCGTCGTATTTCTTGGTTTAGAAAGAACAAAGATTCAGTTCAAGCC
TTGGGTTTACATTTCGTCATTGAAGAGCTTCTTTTTTCCCTCAGGTAAAT
GCATCCATCAGATAGACCTATCTACACAACAACAAGCTGAAACATCGATC
AAAATGTACGGAACCGAAAATAAAAACCCATTCCTCAAAATACAAAATTG
TATTTGGAAAATCAAACTGAGTACTCGAAACAAAACGGAAATATCCTTCC
GACATTTCAACATGACAAGCGAGACGACATGCACACAAAGCATGATAGCG
CTTCGTAGCTTTGAAGATCGAAACATATTTTTCTATTGCAGTACCATTCA
GCCGGTAACCGAAAGAGCATTGATTGTTGATGAAAGCGAGGGTTTGATTT
TGGAAGTGAATCGCGGAGACTGGGAGCCGAGCGAAGGATTCGTTTTAAAA
CTGAAGTGAAGAAAGTTTAAAATTCGAACTACAAAACCATTCACTGCATT
TTCATCGTCGTGTCAATGGAGATAAAGTCAACGTTAAATACATGGATGAT
TTTTTTACAGGAATTTGTACATAAACTTTAAGACCAATTTAATTTTAGCT
AAAGTTCGGCAATTATTCTTAATTTTCAGCCTTGACAATAATTTAAGTTG
ATAAAGTTCCTTGAGTTAATTAAATTTGCGGGATAATGGTGAGGTGTATG
TTTGAGCCAAAACTAAAAAAAACAAACTAAAGAGAATTCTG Coding sequence (CDS) from alignment at sc0000463:231589..234979- >TCONS_00023859 ID=TCONS_00023859|Name=TCONS_00023859|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at sc0000463:231589..234979- (Clytia hemisphaerica)
GTAAATGCATCCATCAGATAGACCTATCTACACAACAACAAGCTGAAACA
TCGATCAAAATGTACGGAACCGAAAATAAAAACCCATTCCTCAAAATACA
AAATTGTATTTGGAAAATCAAACTGAGTACTCGAAACAAAACGGAAATAT
CCTTCCGACATTTCAACATGACAAGCGAGACGACATGCACACAAAGCATG
ATAGCGCTTCGTAGCTTTGAAGATCGAAACATATTTTTCTATTGCAGTAC
CATTCAGCCGGTAACCGAAAGAGCATTGATTGTTGATGAAAGCGAGGGTT
TGATTTTGGAAGTGAATCGCGGAGACTGGGAGCCGAGCGAAGGATTCGTT
TTAAAACTGAAGTGAAATCATGCGGAGAGACCTGTGCGGTTGGTCGATGT
GTCGGATACAACCAATGCCAATACATCACACATAAACTGAAAGAAGCTAC
TCACACAGGAGCAAGTCTTATTATTGCAAAAAACGTGTTTGGCGAGCCTG
TACTAAAGATGAAATGGATTTTGCTGATTCAGCTTTTTTTCGTGATCATT
GTTCCACATGATTGTCTCGTGTCTGTTAAAAAAACACTGACGCAGGAGAA
AGAAGCATTTTTACGCCGTCAAGAAGAATGGGTTGATAACTATCATCACT
ATTTTGTACCGTAAATGCATCCATCAGATAGACCTATCTACACAACAACA
AGCTGAAACATCGATCAAAATGTACGGAACCGAAAATAAAAACCCATTCC
TCAAAATACAAAATTGTATTTGGAAAATCAAACTGAGTACTCGAAACAAA
ACGGAAATATCCTTCCGACATTTCAACATGACAAGCGAGACGACATGCAC
ACAAAGCATGATAGCGCTTCGTAGCTTTGAAGATCGAAACATATTTTTCT
ATTGCAGTACCATTCAGCCGGTAACCGAAAGAGCATTGATTGTTGATGAA
AGCGAGGGTTTGATTTTGGAAGTGAATCGCGGAGACTGGGAGCCGAGCGA
AGGATTCGTTTTAAAACTGAAGTGAAATCATGCGGAGAGACCTGTGCGGT
TGGTCGATGTGTCGGATACAACCAATGCCAATACATCACACATAAACTGA
AAGAAGCTACTCACACAGGAGCAAGTCTTATTATTGCAAAAAACGTGTTT
GGCGAGCCTGTACTAAAGATGAAATGGATTTTGCTGATTCAGCTTTTTTT
CGTGATCATTGTTCCACATGATTGTCTCGTGTCTGTTAAAAAAACACTGA
CGCAGGAGAAAGAAGCATTTTTACGCCGTCAAGAAGAATGGGTTGATAAC
TATCATCACTATTTTGTACCGTAAATGCATCCATCAGATAGACCTATCTA
CACAACAACAAGCTGAAACATCGATCAAAATGTACGGAACCGAAAATAAA
AACCCATTCCTCAAAATACAAAATTGTATTTGGAAAATCAAACTGAGTAC
TCGAAACAAAACGGAAATATCCTTCCGACATTTCAACATGACAAGCGAGA
CGACATGCACACAAAGCATGATAGCGCTTCGTAGCTTTGAAGATCGAAAC
ATATTTTTCTATTGCAGTACCATTCAGCCGGTAACCGAAAGAGCATTGAT
TGTTGATGAAAGCGAGGGTTTGATTTTGGAAGTGAATCGCGGAGACTGGG
AGCCGAGCGAAGGATTCGTTTTAAAACTGAAGTGAAATCATGCGGAGAGA
CCTGTGCGGTTGGTCGATGTGTCGGATACAACCAATGCCAATACATCACA
CATAAACTGAAAGAAGCTACTCACACAGGAGCAAGTCTTATTATTGCAAA
AAACGTGTTTGGCGAGCCTGTACTAAAGATGAAATGGATTTTGCTGATTC
AGCTTTTTTTCGTGATCATTGTTCCACATGATTGTCTCGTGTCTGTTAAA
AAAACACTGACGCAGGAGAAAGAAGCATTTTTACGCCGTCAAGAAGAATG
GGTTGATAACTATCATCACTATTTTGTACCGTAAATGCATCCATCAGATA
GACCTATCTACACAACAACAAGCTGAAACATCGATCAAAATGTACGGAAC
CGAAAATAAAAACCCATTCCTCAAAATACAAAATTGTATTTGGAAAATCA
AACTGAGTACTCGAAACAAAACGGAAATATCCTTCCGACATTTCAACATG
ACAAGCGAGACGACATGCACACAAAGCATGATAGCGCTTCGTAGCTTTGA
AGATCGAAACATATTTTTCTATTGCAGTACCATTCAGCCGGTAACCGAAA
GAGCATTGATTGTTGATGAAAGCGAGGGTTTGATTTTGGAAGTGAATCGC
GGAGACTGGGAGCCGAGCGAAGGATTCGTTTTAAAACTGAAGTGAAATCA
TGCGGAGAGACCTGTGCGGTTGGTCGATGTGTCGGATACAACCAATGCCA
ATACATCACACATAAACTGAAAGAAGCTACTCACACAGGAGCAAGTCTTA
TTATTGCAAAAAACGTGTTTGGCGAGCCTGTACTAAAGATGAAATGGATT
TTGCTGATTCAGCTTTTTTTCGTGATCATTGTTCCACATGATTGTCTCGT
GTCTGTTAAAAAAACACTGACGCAGGAGAAAGAAGCATTTTTACGCCGTC
AAGAAGAATGGGTTGATAACTATCATCACTATTTTGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023859-exon-sc0000463-1575043694:234802..234979 | TCONS_00023859-exon-sc0000463-1575043694:234802..234979 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1575043694:234053..234102 | TCONS_00023859-exon-sc0000463-1575043694:234053..234102 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1575043694:233105..233197 | TCONS_00023859-exon-sc0000463-1575043694:233105..233197 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1575043694:231589..232235 | TCONS_00023859-exon-sc0000463-1575043694:231589..232235 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1510915933:234802..234979 | TCONS_00023859-exon-sc0000463-1510915933:234802..234979 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1510915933:234053..234102 | TCONS_00023859-exon-sc0000463-1510915933:234053..234102 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1510915933:233105..233197 | TCONS_00023859-exon-sc0000463-1510915933:233105..233197 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1510915933:231589..232235 | TCONS_00023859-exon-sc0000463-1510915933:231589..232235 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1491911889:234802..234979 | TCONS_00023859-exon-sc0000463-1491911889:234802..234979 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1491911889:234053..234102 | TCONS_00023859-exon-sc0000463-1491911889:234053..234102 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1491911889:233105..233197 | TCONS_00023859-exon-sc0000463-1491911889:233105..233197 | Clytia hemisphaerica | exon |
| TCONS_00023859-exon-sc0000463-1491911889:231589..232235 | TCONS_00023859-exon-sc0000463-1491911889:231589..232235 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000463 | supercontig | sc0000463:231589..234979 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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