TCONS_00023633 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023633
Unique Name	TCONS_00023633
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1505

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000457:14268..18008-
coding sequence from alignment at sc0000457:14268..18008-

transcript sequence

>TCONS_00023633 ID=TCONS_00023633|Name=TCONS_00023633|organism=Clytia hemisphaerica|type=transcript|length=1505bp
ccttttcagcaaaattcaGTCTCGCTAAGGGTCAGGGTTCGGAGGTCTGG
TTCGCACATACCCGACATCCCCAACCCTAGTACGGGGGGTACCGGGATTC
AAACGTAAAATTCTTATTCTAGGTACAAGATGGACACAGGAAATAGTATG
GTGCTTAAAAAACAACATGGaccttgaaaaagccttgtCTACAAATTTGA
ACGTCCGAATTCCAATGTTATGtgATGACTTCTTTGCTAACGACTACGTT
GATCCACAAGTCAGCTCATTTGAATTTGTAAAGAGTATGGAAAGACCAAG
AATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATTTActag
agaaaaaaatcaagATGATCTACGTTATTCGAAATCCAAGAGATGTAATC
ATATCTTATCTCAACCATTTGCGAATATTACATGGGTATGAAGAGATGCA
AGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAGAAGTTA
CAATATCAGATGAAGATGTACTGAGATTGTGTGACCatgtatcttttgaa
aaaatgaaagctAATCCTATGGTTAACAAGGACGAATATTTTGAGGAAAG
GAAAAAAGCGATGAATAATGGTTATGCTGGCAAATTTATTAACAAAGGTA
AAAGTGGAACGTGGAAAGAATATCTAACCGATGAAATGGTTCAAAGATTT
GAACAGTGGGAAGAGAAATGGTTGAAAGATACTGATCTTAAATTTGTTTA
TGAAGTTTGAAGTgtattcaatcaatttttttttattacaatGTTTGTGT
AGGGATACCAAAATCCTTTATTTTTGAATCCgtcaatctcgtacccagag
ccatccaccaattttttttattttactgaaaaACGTGGATATAGTTTAGC
ACTGCGCTGTATCAATATTAGGGCGGTGTGCATTTTTGAAAGACTTGGGC
AGGTTATTTTCGGTGCCCAAGAAGGGCTGTGGCATGAAGTATTCGaaata
aaagtgaaagtgaaaaaagtCAAGACCTttttttttcgagtgatttaccc
ctcgcgATAAACTTTAATATATTATTATTAGCAGGGTGATTTGCGCGAAA
TTGTTACGAAAGtgtgaaaaaattgtcaaaaaactttttttcaaaattta
aacttcTTTTAGTGTTTTTGTAAGATAGGGGCCCAGTTTTTTCACTTACA
GCCAGTTCTTTCACAGTCTATGCGAAGAGTCAGTGAATGCATTTTTTGCA
CTTGAGTAGCAAAAATCTGCACAATTTCAACCTCAATAATTTTCATTGTG
GcaacaaactttcaaaatatttgggATTTTGGGAAGCAATCTAGTCTAGA
TTATCCAAccaatgtaataaaaaattggTGGAAACAAGATTTTTTGTGAA
CTTTaagactttttcaaattttgtcgcGTACGGGACAAGAAAAATTTCAG
TTTTGTCCCGTACGCGACagacaaatcaaaaaaataatttgaaaaagctA
AACAA

Run BLAST on NCBI

protein sequence of TCONS_00023633-protein

>TCONS_00023633-protein ID=TCONS_00023633-protein|Name=TCONS_00023633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MDLEKALSTNLNVRIPMLCDDFFANDYVDPQVSSFEFVKSMERPRIVHTH
LMYDMLPRDLLEKKIKMIYVIRNPRDVIISYLNHLRILHGYEEMQADLPK
VIKRIASFLEVTISDEDVLRLCDHVSFEKMKANPMVNKDEYFEERKKAMN
NGYAGKFINKGKSGTWKEYLTDEMVQRFEQWEEKWLKDTDLKFVYEV

Run BLAST on NCBI

transcript from alignment at sc0000457:14268..18008-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023633 ID=TCONS_00023633|Name=TCONS_00023633|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at sc0000457:14268..18008- (Clytia hemisphaerica)
CCTTTTCAGCAAAATTCAGTCTCGCTAAGGGTCAGGGTTCGGAGGTCTGG
TTCGCACATACCCGACATCCCCAACCCTAGTACGGGGGGTACCGGGATTC
AAACGTAAAATTCTTATTCTAGGTACAAGATGGACACAGGAAATAGTATG
GTGCTTAAAAAACAACATGGACCTTGAAAAAGCCTTGTCTACAAATTTGA
ACGTCCGAATTCCAATGTTATGGTATGTTAAATTAATAAGATTTATACTC
TTAAGTTAAGTTTAAGTTTAGTTAACTTTATGCTCTTAAACATGAATATG
TTAGTTTTAATGTGGTACTTCTGAAAACCAATAGACCACTCAAAATAGCT
TTGGCGAATGGCGTTTTAAATCACCATGCTTAGACACCATAAAGTCGGCC
AGAGAGTAACCCACACTGAGGTTCTTCTCGACAAGGCAAATTAGATTTTG
ATGCGGTCCCAACTTGCGGTCTAAAATCCTCATTAGAAATTTTTGTTTTT
GTAGTGATGACTTCTTTGCTAACGACTACGTTGATCCACAAGTCAGCTCA
TTTGAATTTGTAAAGAGTATGGAAAGACCAAGAATTGTGCACACTCATCT
AATGTACGATATGTTACCGAGAGATTTACTAGAGAAAAAAATCAAGGTAT
GTTCGATTTGTTTATTTTTTAAAACACTACTGAAAATGTGACCCAGAAAA
ATGTTCTTAACCCGGGGGGTACTACCCTTGTCGACCGACGGGGGTGCTCC
GCTGAGATTCGAAAAATGGACCCTACGTGGGACTCGAAATTTGCGAAAAA
AGTAACCCTGAATGGGACTGAAATTCCAAAATTTTCTCAAATTTTCTACT
TTTTACCCAAATTTTCCAAAAATAGACACCCTACGAGGGACTGATTTTTC
TATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTTAAAAAAG
GTACCCTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCT
TAAGTATAACAAAAACCAGACAATTAGATCAGGCTGGGTAAAAGTCTTTG
ATATTGATATACATGATACTAAACTGTTAATCTCTTGGAGGAAGTAACGT
CAGATGCATTTTGACGCCAAAGAAAATTAGAGTCGTTCTGCATATAATTC
GACCTTTGTTTTTCGCGTTTGAAAACTTTTGCGGGAACTTAATTTTGTGG
TTTTGGGCCAATTTGGTAGATTAAAAATACTAGTATTGTTGCTTTTGCTT
TTGAGGGTGTGTGTTTTTAAGGGGTATCTACTGACTTGTATCGAATTGCT
TATCAAATTTTGTAGTTTCAGGGGTTTAGCCTGTGATATCAGCTTCTTCC
GGTTTTTCCAAGGTTTTATTCGTTGAAAAATATTTCTGATGGGCTACTAT
TTGAAAAAGAACAAAGGGGTGATTGCATCGTCTGTGACGAATCTTAAGAG
TTGGCCCATTTTACTCCCTGTATTAGGGCTGGAGAATCGGGTATAAGCAG
ACCGAAAACCGACACTTAGAGAGACTAAATTTTGGCGAAAAAGTGAACCT
TAGAGAGATAAAATTGGTGAAAAAGTGACCCTTAGAAACTGTTTTCAAAA
ATTTTCTTGACCTTAGTGAGACTTTCAAGTTTTCGTGCTTTTCGCATCCT
TAGAGACTGTGAAACGTGAAAAACCCGACCCTCAGAGAGAATATTTCGCC
TTTATGTTATTTTTGTAACCCTTAGAGAGACTTTGAAAGGTGAAAAAGCC
TACCTTTACCGTCCGCACGTTCCAGCACCTATTTTTGTCTAAGTACTCCC
ATGAGCTTTACCTTTTTAATTCTTACTGATTTCTACCTTTAGATGATCTA
CGTTATTCGAAATCCAAGAGATGTAATCATATCTTATCTCAACCATTTGC
GAATATTACATGGGTATGAAGGAGATTTGCAAACACTGCTTGATTTATTC
TTAAAAGATTTAGGACCGCATTGGGGTCCTTATTTCAAACATGTTTTAAG
TTATTGGAACAAGAAATCAGAGCTACCAAATTTGTTGATTACAAGGTATG
AAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCTTC
CTAGAAGTTACAATATCAGATGAAGATGTACTGAGATTGTGTGACCATGT
ATCTTTTGAAAAAATGAAAGCTAATCCTATGGTTAACAAGGACGAATATT
TTGAGGTAAGTTGATTTCGTTAATGCTTATTTTAGGAATCATATCGGGCT
TTTCCAGAAAGAAACTCTACAGCCCCTGTTTAGGAGTTCCAACCTTTTGT
GACCTACCCCATTAGAATTCCAACCGGATATACTGTAACCCCCCTTAAAT
TTCCAGTCCAAACCTTTCTGGGATTCCGGATTTTTACAGGAGTTGAAACA
CTACCTCAATGGAATTCTGCTTATTTTTTGACGGATTTTTGTAGACCCCT
ATGTGGAATTCTACCTCATTTCAAACCCTACCCCCTGTAACAGTGGAGAG
TGTAGTTTTTTCTAGAAAAGCCCACTTGGTCTAAAAGCAAATTCTGTTCC
CAAAAAAGCCGATCTCTTTCCCGTTCGGATACAAACGACCCCTGACCGCA
TAATCACGGTTGAAAAGGTTTAATTTCGAAACTAATCTCGCATAGTTGTA
GCCATTCCACAAATCTTCCATATACTTTTAGGAAAGGAAAAAAGCGATGA
ATAATGGTTATGCTGGCAAATTTATTAACAAAGGTAAAAGTGGAACGTGG
AAAGAATATCTAACCGATGAAATGGTTCAAAGATTTGAACAGTGGGAAGA
GAAATGGTTGAAAGATACTGATCTTAAATTTGTTTATGAAGTTTGAAGTG
TATTCAATCAATTTTTTTTTATTACAATGTTTGTGTAGGGATACCAAAAT
CCTTTATTTTTGAATCCGTCAATCTCGTACCCAGAGCCATCCACCAATTT
TTTTTATTTTACTGAAAAACGTGGATATAGTTTAGCACTGCGCTGTATCA
ATATTAGGGCGGTGTGCATTTTTGAAAGACTTGGGCAGGTTATTTTCGGT
GCCCAAGAAGGGCTGTGGCATGAAGTATTCGAAATAAAAGTGAAAGTGAA
AAAAGTCAAGACCTTTTTTTTTCGAGTGATTTACCCCTCGCGATAAACTT
TAATATATTATTATTAGCAGGGTGATTTGCGCGAAATTGTTACGAAAGTG
TGAAAAAATTGTCAAAAAACTTTTTTTCAAAATTTAAACTTCTTTTAGTG
TTTTTGTAAGATAGGGGCCCAGTTTTTTCACTTACAGCCAGTTCTTTCAC
AGTCTATGCGAAGAGTCAGTGAATGCATTTTTTGCACTTGAGTAGCAAAA
ATCTGCACAATTTCAACCTCAATAATTTTCATTGTGGCAACAAACTTTCA
AAATATTTGGGATTTTGGGAAGCAATCTAGTCTAGATTATCCAACCAATG
TAATAAAAAATTGGTGGAAACAAGATTTTTTGTGAACTTTAAGACTTTTT
CAAATTTTGTCGCGTACGGGACAAGAAAAATTTCAGTTTTGTCCCGTACG
CGACAGACAAATCAAAAAAATAATTTGAAAAAGCTAAACAA

Coding sequence (CDS) from alignment at sc0000457:14268..18008-

>TCONS_00023633 ID=TCONS_00023633|Name=TCONS_00023633|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000457:14268..18008- (Clytia hemisphaerica)
GAAAGGAAAAAAGCGATGAATAATGGTTATGCTGGCAAATTTATTAACAA
AGGTAAAAGTGGAACGTGGAAAGAATATCTAACCGATGAAATGGTTCAAA
GATTTGAACAGTGGGAAGAGAAATGGTTGAAAGATACTGATCTTAAATTT
GTTTATGAAGTTTGAGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTA
TTAAAAGAATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTA
CTGAGATTGTGTGACCATGTATCTTTTGAAAAAATGAAAGCTAATCCTAT
GGTTAACAAGGACGAATATTTTGAGATGATCTACGTTATTCGAAATCCAA
GAGATGTAATCATATCTTATCTCAACCATTTGCGAATATTACATGGTGAT
GACTTCTTTGCTAACGACTACGTTGATCCACAAGTCAGCTCATTTGAATT
TGTAAAGAGTATGGAAAGACCAAGAATTGTGCACACTCATCTAATGTACG
ATATGTTACCGAGAGATTTACTAGAGAAAAAAATCAAGATGGACCTTGAA
AAAGCCTTGTCTACAAATTTGAACGTCCGAATTCCAATGTTATGGAAAGG
AAAAAAGCGATGAATAATGGTTATGCTGGCAAATTTATTAACAAAGGTAA
AAGTGGAACGTGGAAAGAATATCTAACCGATGAAATGGTTCAAAGATTTG
AACAGTGGGAAGAGAAATGGTTGAAAGATACTGATCTTAAATTTGTTTAT
GAAGTTTGAGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAA
GAATTGCCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGA
TTGTGTGACCATGTATCTTTTGAAAAAATGAAAGCTAATCCTATGGTTAA
CAAGGACGAATATTTTGAGATGATCTACGTTATTCGAAATCCAAGAGATG
TAATCATATCTTATCTCAACCATTTGCGAATATTACATGGTGATGACTTC
TTTGCTAACGACTACGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAA
GAGTATGGAAAGACCAAGAATTGTGCACACTCATCTAATGTACGATATGT
TACCGAGAGATTTACTAGAGAAAAAAATCAAGATGGACCTTGAAAAAGCC
TTGTCTACAAATTTGAACGTCCGAATTCCAATGTTATGGAAAGGAAAAAA
GCGATGAATAATGGTTATGCTGGCAAATTTATTAACAAAGGTAAAAGTGG
AACGTGGAAAGAATATCTAACCGATGAAATGGTTCAAAGATTTGAACAGT
GGGAAGAGAAATGGTTGAAAGATACTGATCTTAAATTTGTTTATGAAGTT
TGAGTATGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAGAATTG
CCAGCTTCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGATTGTGT
GACCATGTATCTTTTGAAAAAATGAAAGCTAATCCTATGGTTAACAAGGA
CGAATATTTTGAGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCA
TATCTTATCTCAACCATTTGCGAATATTACATGGTGATGACTTCTTTGCT
AACGACTACGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAGTAT
GGAAAGACCAAGAATTGTGCACACTCATCTAATGTACGATATGTTACCGA
GAGATTTACTAGAGAAAAAAATCAAGATGGACCTTGAAAAAGCCTTGTCT
ACAAATTTGAACGTCCGAATTCCAATGTTATGGAAAGGAAAAAAGCGATG
AATAATGGTTATGCTGGCAAATTTATTAACAAAGGTAAAAGTGGAACGTG
GAAAGAATATCTAACCGATGAAATGGTTCAAAGATTTGAACAGTGGGAAG
AGAAATGGTTGAAAGATACTGATCTTAAATTTGTTTATGAAGTTTGAGTA
TGAAGAGATGCAAGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCT
TCCTAGAAGTTACAATATCAGATGAAGATGTACTGAGATTGTGTGACCAT
GTATCTTTTGAAAAAATGAAAGCTAATCCTATGGTTAACAAGGACGAATA
TTTTGAGATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTT
ATCTCAACCATTTGCGAATATTACATGGTGATGACTTCTTTGCTAACGAC
TACGTTGATCCACAAGTCAGCTCATTTGAATTTGTAAAGAGTATGGAAAG
ACCAAGAATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATT
TACTAGAGAAAAAAATCAAGATGGACCTTGAAAAAGCCTTGTCTACAAAT
TTGAACGTCCGAATTCCAATGTTATGGAAAGGAAAAAAGCGATGAATAAT
GGTTATGCTGGCAAATTTATTAACAAAGGTAAAAGTGGAACGTGGAAAGA
ATATCTAACCGATGAAATGGTTCAAAGATTTGAACAGTGGGAAGAGAAAT
GGTTGAAAGATACTGATCTTAAATTTGTTTATGAAGTTTGAGTATGAAGA
GATGCAAGCAGATTTACCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAG
AAGTTACAATATCAGATGAAGATGTACTGAGATTGTGTGACCATGTATCT
TTTGAAAAAATGAAAGCTAATCCTATGGTTAACAAGGACGAATATTTTGA
GATGATCTACGTTATTCGAAATCCAAGAGATGTAATCATATCTTATCTCA
ACCATTTGCGAATATTACATGGTGATGACTTCTTTGCTAACGACTACGTT
GATCCACAAGTCAGCTCATTTGAATTTGTAAAGAGTATGGAAAGACCAAG
AATTGTGCACACTCATCTAATGTACGATATGTTACCGAGAGATTTACTAG
AGAAAAAAATCAAGATGGACCTTGAAAAAGCCTTGTCTACAAATTTGAAC
GTCCGAATTCCAATGTTATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013275	XLOC_013275	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023633-protein	TCONS_00023633-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000457	supercontig	sc0000457:14268..18008 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
248.426	244.467	198.434	192.001	10.9063	8.66052	33.7503	20.6752	8.08298	22.2644	19.8328	5.25004	0.0546184	0.0224029	0.0155443	0.100089	34.3266	49.9684	0	0	114.609	102.175	107.633	96.4568	2.27658	1.04969	5.23266	5.29263	35.1694	46.4004

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000863	Sulfotransferase_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0008146	sulfotransferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008146	sulfotransferase activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023633 vs. Swiss-Prot (Human)

BLAST of TCONS_00023633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023633 (transcript) - C. hemisphaerica