TCONS_00023485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023485
Unique NameTCONS_00023485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023485 ID=TCONS_00023485|Name=TCONS_00023485|organism=Clytia hemisphaerica|type=transcript|length=978bp
CCCCGTCCGAATCCAAAATCATTTCAGGCAACTTTAATCATCATTTTAGT
TCGCACCTTATCCTTTAAATTATTCCATGCGGTAAATCGAATACCATAAA
ATTCAACTGAAGGATCATTAATTCCATTAAAAAAAGCCGTCCCGCAGTCA
TTATACCACCATCCTCCTTGGAAGCGGTCAGCACAATTGCCATAGGGCCA
GCTATCGTGGTCCGAACCAGTTGTTGAAAATGGTTGCCCTTTCACTAAAC
CGAAACCACCCATACCATCCATTACCCTCATATCTGAGCTCATGCGATAA
AAATCATCTTCTGACGAAATGAAAAAACTGTCGTGTCGGCCATATCTGGT
GACTCCATCTGTATCTTCCACTTCGAATATGAATTGAACAGATTTTCCCC
AAGTCAATCGGTAAAGATATTCATTGCCCAACCAAAATTCTCCACCATTA
ATTTGACCAAAACCATCTTTATATTCTTCCCAATCGCGATTGAAATCAAC
AGAATTGttgaatcttttttgaaaaacaatccAACCACCATCGAAATTGG
TCATATCGCACCAAACCTGAACCGATTTTCGATCAATAGCAATGTCATAT
AATCCATCTTTGTCGTATCCAAGAGTTTTCCAATCTTGACAATCCTTTGG
TTTTGGTTTATCTAAAATATAAACCGTGCTATTGGTATGATCTTGAAAAT
ATTCCTTGTCCATGTTTGGGCTTTTCTTATTCATAAATATACGACAATGA
TACCAATGGTCAAAtactttaagaacattgatcatAAAGCGTGTTGGATG
TTGAGATAAGAGTTGACATTCCAAGACAGAAGTGGTGTTTGTCTCCAGAA
CTGGATCCATACCCTTGATAATGGTCTTTTCAAACATTGTATAATAATAG
TCATTAACTGcataacaaaaattatttgaattgAACGTCCATAGTAGATA
ACATgtcaaaaacaaattaaaatcaaaC
Run BLAST on NCBI

protein sequence of TCONS_00023485-protein

>TCONS_00023485-protein ID=TCONS_00023485-protein|Name=TCONS_00023485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
FDFNLFLTCYLLWTFNSNNFCYAVNDYYYTMFEKTIIKGMDPVLETNTTS
VLECQLLSQHPTRFMINVLKVFDHWYHCRIFMNKKSPNMDKEYFQDHTNS
TVYILDKPKPKDCQDWKTLGYDKDGLYDIAIDRKSVQVWCDMTNFDGGWI
VFQKRFNNSVDFNRDWEEYKDGFGQINGGEFWLGNEYLYRLTWGKSVQFI
FEVEDTDGVTRYGRHDSFFISSEDDFYRMSSDMRVMDGMGGFGLVKGQPF
STTGSDHDSWPYGNCADRFQGGWWYNDCGTAFFNGINDPSVEFYGIRFTA
WNNLKDKVRTKMMIKVA
Run BLAST on NCBI

transcript from alignment at sc0000454:245883..246860

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023485 ID=TCONS_00023485|Name=TCONS_00023485|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at sc0000454:245883..246860 (Clytia hemisphaerica)
GtttgattttaatttgtttttgacATGTTATCTACTATGGACGTTcaatt
caaataatttttgttatgCAGTTAATGACTATTATTATACAATGTTTGAA
AAGACCATTATCAAGGGTATGGATCCAGTTCTGGAGACAAACACCACTTC
TGTCTTGGAATGTCAACTCTTATCTCAACATCCAACACGCTTTatgatca
atgttcttaaagtaTTTGACCATTGGTATCATTGTCGTATATTTATGAAT
AAGAAAAGCCCAAACATGGACAAGGAATATTTTCAAGATCATACCAATAG
CACGGTTTATATTTTAGATAAACCAAAACCAAAGGATTGTCAAGATTGGA
AAACTCTTGGATACGACAAAGATGGATTATATGACATTGCTATTGATCGA
AAATCGGTTCAGGTTTGGTGCGATATGACCAATTTCGATGGTGGTTggat
tgtttttcaaaaaagattcaaCAATTCTGTTGATTTCAATCGCGATTGGG
AAGAATATAAAGATGGTTTTGGTCAAATTAATGGTGGAGAATTTTGGTTG
GGCAATGAATATCTTTACCGATTGACTTGGGGAAAATCTGTTCAATTCAT
ATTCGAAGTGGAAGATACAGATGGAGTCACCAGATATGGCCGACACGACA
GTTTTTTCATTTCGTCAGAAGATGATTTTTATCGCATGAGCTCAGATATG
AGGGTAATGGATGGTATGGGTGGTTTCGGTTTAGTGAAAGGGCAACCATT
TTCAACAACTGGTTCGGACCACGATAGCTGGCCCTATGGCAATTGTGCTG
ACCGCTTCCAAGGAGGATGGTGGTATAATGACTGCGGGACGGCTTTTTTT
AATGGAATTAATGATCCTTCAGTTGAATTTTATGGTATTCGATTTACCGC
ATGGAATAATTTAAAGGATAAGGTGCGAACTAAAATGATGATTAAAGTTG
CCTGAAATGATTTTGGATTCGGACGGGG

Coding sequence (CDS) from alignment at sc0000454:245883..246860

>TCONS_00023485 ID=TCONS_00023485|Name=TCONS_00023485|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000454:245883..246860 (Clytia hemisphaerica)
tttgattttaatttgtttttgacATGTTATCTACTATGGACGTTcaattc
aaataatttttgttatgCAGTTAATGACTATTATTATACAATGTTTGAAA
AGACCATTATCAAGGGTATGGATCCAGTTCTGGAGACAAACACCACTTCT
GTCTTGGAATGTCAACTCTTATCTCAACATCCAACACGCTTTatgatcaa
tgttcttaaagtaTTTGACCATTGGTATCATTGTCGTATATTTATGAATA
AGAAAAGCCCAAACATGGACAAGGAATATTTTCAAGATCATACCAATAGC
ACGGTTTATATTTTAGATAAACCAAAACCAAAGGATTGTCAAGATTGGAA
AACTCTTGGATACGACAAAGATGGATTATATGACATTGCTATTGATCGAA
AATCGGTTCAGGTTTGGTGCGATATGACCAATTTCGATGGTGGTTggatt
gtttttcaaaaaagattcaaCAATTCTGTTGATTTCAATCGCGATTGGGA
AGAATATAAAGATGGTTTTGGTCAAATTAATGGTGGAGAATTTTGGTTGG
GCAATGAATATCTTTACCGATTGACTTGGGGAAAATCTGTTCAATTCATA
TTCGAAGTGGAAGATACAGATGGAGTCACCAGATATGGCCGACACGACAG
TTTTTTCATTTCGTCAGAAGATGATTTTTATCGCATGAGCTCAGATATGA
GGGTAATGGATGGTATGGGTGGTTTCGGTTTAGTGAAAGGGCAACCATTT
TCAACAACTGGTTCGGACCACGATAGCTGGCCCTATGGCAATTGTGCTGA
CCGCTTCCAAGGAGGATGGTGGTATAATGACTGCGGGACGGCTTTTTTTA
ATGGAATTAATGATCCTTCAGTTGAATTTTATGGTATTCGATTTACCGCA
TGGAATAATTTAAAGGATAAGGTGCGAACTAAAATGATGATTAAAGTTGC
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013202XLOC_013202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023485-proteinTCONS_00023485-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023485-exon-sc0000454-1491911889:245883..246860TCONS_00023485-exon-sc0000454-1491911889:245883..246860Clytia hemisphaericaexon
TCONS_00023485-exon-sc0000454-1510915933:245883..246860TCONS_00023485-exon-sc0000454-1510915933:245883..246860Clytia hemisphaericaexon
TCONS_00023485-exon-sc0000454-1575043694:245883..246860TCONS_00023485-exon-sc0000454-1575043694:245883..246860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000454supercontigsc0000454:245883..246860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0461349	0.0449888	0	0	0.0622155	0.245818	0.355882	0.277644	0.194385	0.288933	0.0934817	0.215079	4.35697	4.01492	0.261969	0.281133	0.138533	0.141992	5.88509	5.43985	0.223029	0.0652715	0.0528974	0.192366	0.842061	0.928348	0.379561	0.540103	0.409649	0.052171
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
IPR020837Fibrinogen_CS
Blast
[Close]
BLAST of TCONS_00023485 vs. Swiss-Prot (Human)
Match: ANGL1 (Angiopoietin-related protein 1 OS=Homo sapiens GN=ANGPTL1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.792e-31
Identity = 69/180 (38.33%), Postives = 101/180 (56.11%), Query Frame = -2 
Query:  120 KDCQDWKTLGYDKDGLYDIAIDRKS--VQVWCDMTNFDGGWIVFQKRFNNSVDFNRDWEEYKDGFGQINGGEFWLGNEYLYRLTWGKSVQFIFEVEDTDGVTRYGRHDSFFISSEDDFYRMSSDMRVMDGMGGFGLV--KGQPFSTTGSDHDSWPYGNCADRFQGGWWYNDCGTAFFNGI 647
            KDCQ  K  G+   G+Y I  +  +  +Q+WC+ +   GGW V QKR + SV+F R+WE YK GFG I+ GE+WLG E +Y L+   + + + E+ED      Y  + SF +  E +FYR+   +    G  G  ++   G+ F+T   D D +  GNCA   +GGWWYN C  +  NG+
Sbjct:  278 KDCQQAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWENYKKGFGNID-GEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEFYRLR--LGTYQGNAGDSMMWHNGKQFTTLDRDKDMYA-GNCAHFHKGGWWYNACAHSNLNGV 453
The following BLAST results are available for this feature:
BLAST of TCONS_00023485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL11.792e-3138.33Angiopoietin-related protein 1 OS=Homo sapiens GN=... [more]
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