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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022158 ID=TCONS_00022158|Name=TCONS_00022158|organism=Clytia hemisphaerica|type=transcript|length=3161bpRun BLAST on NCBI protein sequence of TCONS_00022158-protein >TCONS_00022158-protein ID=TCONS_00022158-protein|Name=TCONS_00022158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=774bp FRKVELNRKSLQQKMRHSCLLLLLFVVSTNCRYYLDDSNRDYLANLINQERun BLAST on NCBI transcript from alignment at sc0000406:186854..198407+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022158 ID=TCONS_00022158|Name=TCONS_00022158|organism=Clytia hemisphaerica|type=transcript|length=11554bp|location=Sequence derived from alignment at sc0000406:186854..198407+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000406:186854..198407+ >TCONS_00022158 ID=TCONS_00022158|Name=TCONS_00022158|organism=Clytia hemisphaerica|type=CDS|length=48825bp|location=Sequence derived from alignment at sc0000406:186854..198407+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022158 vs. Swiss-Prot (Human)
Match: AMD (Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 1.364e-62 Identity = 124/326 (38.04%), Postives = 180/326 (55.21%), Query Frame = 2
Query: 398 LLMPGVSPQKPDTYLCYAQKMS-DDDQYITKFEPLADMKVAHHMLLFSCDEPFQKDKVWGCREMAPVCKSGMQMIKYAWGKNAPSLEMPKDVAFHVGGKSPVKYLVLQVHYLNVDSFKDGKTKDHSGLIYTTTTQKPSYFAGIYLLAAGWPPIPPHKDKFHMDMECGYKSSKQMKIYPFRFRVHAHKLGAVITAYRVRNGKYTLIGRGDPQRPQAFYKVDNDLDIKDGDDVIGRCTFNSTSRDTVTNIGATHKDEMCNFYIMMFYKADYGDQNPGCMQTT--DSF-SYPDDSDVTLAEMERKGSMYLH--EKRFKQKMAQLQAKRK 1357
+ MPGV+P++ DTY C + ++ D++ ++ F+P A M HHMLLF C+ P W C E K+ I YAW +NAP +PK V F VGG++ KY VLQVHY ++ +F+D KD SG+ T AG+YL+ + IP + + D+ C YK+ ++ F +RVH H LG V++ YRVRNG++TLIGR PQ PQAFY V + +D+ GD + RC F R T+IG T DEMCN YIM + +A + C Q D F + P ++++ + M+ H E +K K+ LQ ++
Sbjct: 61 IRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDKAN---ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRD-NNKDCSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDISCHYKN---YPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEANIPIPVKSDMVMMHEHHKETEYKDKIPLLQQPKR 379 HSP 2 Score: 194.897 bits (494), Expect = 8.344e-51 Identity = 113/315 (35.87%), Postives = 174/315 (55.24%), Query Frame = 2
Query: 1427 GQIAGVEVN-KDHVIIFHRGGRKWDQNSFDAQNKLASALQEPISDDTLVWLDRHTGEFVKSMGAHLFYMPHGITLDQSGNIWLTDVGAHQVFKLSPEGK--VLLVVGERFVPGDDGKHFCKPTDVVVVQETGEFFVSDGYCNQRVVKFDKTGSKMLMEISPKSISHLNPPSMRIVHSLAFDEENNRLYVADRENNRVLVFNSQDGDYVWQI---AFKEAVYAVAVNKKDNVLHAVT--TNYVDPKKTSGYTYHLKSKSFITTWKPPAG-FGRPHDLAVSKDDNEIYVSEIGPNRVIKFASKQAQKTRP*WNPGVE 2344
GQ++GV ++ K++++IFHRG WD NSFD++ PI +DT++ +D + ++S G +LFY+PHG+++D+ GN W+TDV HQVFKL P K +L++G PG D HFC+PTDV V TG +VSDGYCN R+V+F +G + S S P + HSLA +L VADREN R+ F + ++V +I +F V+A++ +L AV ++ D + G+ + + I +KP F PHD+ V+ +D +Y+ + N V KF + + R G+E
Sbjct: 512 GQVSGVALDPKNNLVIFHRGDHVWDGNSFDSKFVYQQIGLGPIEEDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGNYWVTDVALHQVFKLDPNNKEGPVLILGRSMQPGSDQNHFCQPTDVAVDPGTGAIYVSDGYCNSRIVQFSPSGKFITQWGEESSGSSPLPGQFTVPHSLALVPLLGQLCVADRENGRIQCFKTDTKEFVREIKHSSFGRNVFAISY--IPGLLFAVNGKPHFGDQEPVQGFVMNFSNGEIIDIFKPVRKHFDMPHDI-VASEDGTVYIGDAHTNTVWKFTLTEKLEHRSVKKAGIE 823 The following BLAST results are available for this feature:
BLAST of TCONS_00022158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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