TCONS_00020144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020144
Unique NameTCONS_00020144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020144 ID=TCONS_00020144|Name=TCONS_00020144|organism=Clytia hemisphaerica|type=transcript|length=2042bp
cagaaaattaggaaaaaatatGAATGTGAATTGAGTAAAAAtgtaaactc
ttttttttttgtaagcataacgtttataagcatacttaggtTCAAACTCG
GTAAAAAAAAAGCATAATGCTAAAAGCtacctccaagctgaaatgcaaaa
aaacttGTACAGCTTCtctaaaacgctgacctttAAGGGTTAcctttaaa
gctgttttagctttcttagaccaaagattttcgcTTGCGGCACCAATTTA
CAAAAAATCTGTAACTTTTTGAGCCGTATCAAAGTTCCGACTTAGAAATT
CGAATTTCCatgaacccaaagaaaatcaataaaacgaAGTCTAAGAATat
aaattaaggctgaaaataagattttactaAGCATGCTGAGCCTCGACCCG
ATTTCCCCATGCTTAttaaaaaagtgtataaaaGAGGGATTGTTATTAAC
TATTGGTCTTCCAAAACTAGGTAATATCTTgataaaaaattcataaattc
cTTGGTTTCATTTCAATCTGAAGTCCTTCCTCATTCATCACTCCATGAAT
AACTCCAATAGTCTCCAATAAATCCTCCGCTCGCTGCTTGGCAACAATCT
CGAAATTCAATAACAAATGATACAAAGTGCATTTCATCTCCATCATTGCA
AAACGCTGACCTATGCAATTTCTTGGTCCAGCTGAAAACGGTATAAAAGC
GAATGGGTTCCAGTCATGCTCAGGAGAACCAAATCTTTCGGGTTTGAAAA
CCATCGGATCTGACCAGTTGTTTGGGTCACGCTGCATAGCTAATATGCAG
ATACTAAAAGTGGTACCTTTAGGGAATTTCCAGGAATCGAAGACCATTTC
TTCTTCGATTTCTCGGCTAACGATTGGAGCTGATGGATGAATCCTCAACG
TCTCCTTGATTACACATTCGACATATTTTAACTCCTTAACCATCTCATTT
AGAGGgagattcaatttttcaacgtTCTTAACCTCTTCAAAAGCTTTTTG
TTGGATTTCCGGATGTGAGCCAATCATGAAGAGACACCAACTAAGAGCTG
TTGCTACTGTATCATAACCTGCGAACATGAAACCTTGCGTCTCGTTCAAT
ACATCTTCGACATTTACTTCACCATTTTGTAATGATTTTAACAATCTATC
TAACAAAATAATTTGCTTTTCATCTGACATGGGTTTCTCCTTTAGCTGCT
CAATACGCTTCTCTATGATATTGGTACCAAACTTTTTCACGAAATCTAAC
GTCTCGTAAAAGTCTTGACCGACTGGTGTGAGCTGGAATGTTGTTTTATA
CCATTGCCAAGGTCGATCGTTGCGGTTTACAAGAATGACCAATAGGCGAT
CAATAGCTTTTAAGAATCTGAAAATGTTTGCTTGGTGTTCACCTGGTGAA
TCTTTAACGGTTTCATTGTTTGCAACATCCAAAGCGATATCGATGAAGTC
ATTTTCCACACCCATGGATGTTTCTAATATGACACCGAGAGAATAGGTTT
TCATCACTTTAAACGCATTGAATGAAtctggttgttttttcaaagctttA
ACCAGGTCTTGCGAATGTTTCACCATAGTTGGTAGAAACTCTGTTAAAAT
GTTGAAATGAAATGAAGGCGTTAACAACTTTCTACGCCTTCTCCAAAACG
CCCCAGTACTTGTGAATAAGTTCAATCCAAGCCAGTCATCAAACACCCAG
TAATTAGAAGACTTTGTAAGAACTTTATTACTGGACATAATGGATTCGAA
TAGTTTAACATCCTTGCATAAAACATTCGGTCGAAGTCCAATCCAGAGAG
CTGTGATTGGAGAACGGTCTAACCAATCCAAGAAAAGATGATGAAATTCG
TTAGCTGTGAAGCCAATCACAGACGGTATATGTCCAAGAATGGGGTATAT
TTGAAGTGGTATATTAGATATATGGCTCCATGGGCGTGTAACGTGcaacc
aataaaatttcaataCCAGATATGCGAATAAGCCAAATGCAACCAGTTCA
AATATCATacttattttcttttaattttttggtaattttttt
Run BLAST on NCBI

protein sequence of TCONS_00020144-protein

>TCONS_00020144-protein ID=TCONS_00020144-protein|Name=TCONS_00020144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MIFELVAFGLFAYLVLKFYWLHVTRPWSHISNIPLQIYPILGHIPSVIGF
TANEFHHLFLDWLDRSPITALWIGLRPNVLCKDVKLFESIMSSNKVLTKS
SNYWVFDDWLGLNLFTSTGAFWRRRRKLLTPSFHFNILTEFLPTMVKHSQ
DLVKALKKQPDSFNAFKVMKTYSLGVILETSMGVENDFIDIALDVANNET
VKDSPGEHQANIFRFLKAIDRLLVILVNRNDRPWQWYKTTFQLTPVGQDF
YETLDFVKKFGTNIIEKRIEQLKEKPMSDEKQIILLDRLLKSLQNGEVNV
EDVLNETQGFMFAGYDTVATALSWCLFMIGSHPEIQQKAFEEVKNVEKLN
LPLNEMVKELKYVECVIKETLRIHPSAPIVSREIEEEMVFDSWKFPKGTT
FSICILAMQRDPNNWSDPMVFKPERFGSPEHDWNPFAFIPFSAGPRNCIG
QRFAMMEMKCTLYHLLLNFEIVAKQRAEDLLETIGVIHGVMNEEGLQIEM
KPRNL
Run BLAST on NCBI

transcript from alignment at sc0000349:152461..154502

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020144 ID=TCONS_00020144|Name=TCONS_00020144|organism=Clytia hemisphaerica|type=transcript|length=2042bp|location=Sequence derived from alignment at sc0000349:152461..154502 (Clytia hemisphaerica)
aaaaaaattaccaaaaaattaaaagaaaataagtATGATATTTGAACTGG
TTGCATTTGGCTTATTCGCATATCTGGtattgaaattttattggttgCAC
GTTACACGCCCATGGAGCCATATATCTAATATACCACTTCAAATATACCC
CATTCTTGGACATATACCGTCTGTGATTGGCTTCACAGCTAACGAATTTC
ATCATCTTTTCTTGGATTGGTTAGACCGTTCTCCAATCACAGCTCTCTGG
ATTGGACTTCGACCGAATGTTTTATGCAAGGATGTTAAACTATTCGAATC
CATTATGTCCAGTAATAAAGTTCTTACAAAGTCTTCTAATTACTGGGTGT
TTGATGACTGGCTTGGATTGAACTTATTCACAAGTACTGGGGCGTTTTGG
AGAAGGCGTAGAAAGTTGTTAACGCCTTCATTTCATTTCAACATTTTAAC
AGAGTTTCTACCAACTATGGTGAAACATTCGCAAGACCTGGTTaaagctt
tgaaaaaacaaccagaTTCATTCAATGCGTTTAAAGTGATGAAAACCTAT
TCTCTCGGTGTCATATTAGAAACATCCATGGGTGTGGAAAATGACTTCAT
CGATATCGCTTTGGATGTTGCAAACAATGAAACCGTTAAAGATTCACCAG
GTGAACACCAAGCAAACATTTTCAGATTCTTAAAAGCTATTGATCGCCTA
TTGGTCATTCTTGTAAACCGCAACGATCGACCTTGGCAATGGTATAAAAC
AACATTCCAGCTCACACCAGTCGGTCAAGACTTTTACGAGACGTTAGATT
TCGTGAAAAAGTTTGGTACCAATATCATAGAGAAGCGTATTGAGCAGCTA
AAGGAGAAACCCATGTCAGATGAAAAGCAAATTATTTTGTTAGATAGATT
GTTAAAATCATTACAAAATGGTGAAGTAAATGTCGAAGATGTATTGAACG
AGACGCAAGGTTTCATGTTCGCAGGTTATGATACAGTAGCAACAGCTCTT
AGTTGGTGTCTCTTCATGATTGGCTCACATCCGGAAATCCAACAAAAAGC
TTTTGAAGAGGTTAAGAacgttgaaaaattgaatctcCCTCTAAATGAGA
TGGTTAAGGAGTTAAAATATGTCGAATGTGTAATCAAGGAGACGTTGAGG
ATTCATCCATCAGCTCCAATCGTTAGCCGAGAAATCGAAGAAGAAATGGT
CTTCGATTCCTGGAAATTCCCTAAAGGTACCACTTTTAGTATCTGCATAT
TAGCTATGCAGCGTGACCCAAACAACTGGTCAGATCCGATGGTTTTCAAA
CCCGAAAGATTTGGTTCTCCTGAGCATGACTGGAACCCATTCGCTTTTAT
ACCGTTTTCAGCTGGACCAAGAAATTGCATAGGTCAGCGTTTTGCAATGA
TGGAGATGAAATGCACTTTGTATCATTTGTTATTGAATTTCGAGATTGTT
GCCAAGCAGCGAGCGGAGGATTTATTGGAGACTATTGGAGTTATTCATGG
AGTGATGAATGAGGAAGGACTTCAGATTGAAATGAAACCAAggaatttat
gaattttttatcAAGATATTACCTAGTTTTGGAAGACCAATAGTTAATAA
CAATCCCTCttttatacacttttttaaTAAGCATGGGGAAATCGGGTCGA
GGCTCAGCATGCTtagtaaaatcttattttcagccttaatttatATTCTT
AGACTtcgttttattgattttctttgggttcatGGAAATTCGAATTTCTA
AGTCGGAACTTTGATACGGCTCAAAAAGTTACAGATTTTTTGTAAATTGG
TGCCGCAAgcgaaaatctttggtctaagaaagctaaaacagctttaaagg
TAACCCTTaaaggtcagcgttttagaGAAGCTGTACaagtttttttgcat
ttcagcttggaggtaGCTTTTAGCATTATGCTTTTTTTTTACCGAGTTTG
Aacctaagtatgcttataaacgttatgcttacaaaaaaaaaagagtttac
aTTTTTACTCAATTCACATTCatattttttcctaattttctg

Coding sequence (CDS) from alignment at sc0000349:152461..154502

>TCONS_00020144 ID=TCONS_00020144|Name=TCONS_00020144|organism=Clytia hemisphaerica|type=CDS|length=1518bp|location=Sequence derived from alignment at sc0000349:152461..154502 (Clytia hemisphaerica)
ATGATATTTGAACTGGTTGCATTTGGCTTATTCGCATATCTGGtattgaa
attttattggttgCACGTTACACGCCCATGGAGCCATATATCTAATATAC
CACTTCAAATATACCCCATTCTTGGACATATACCGTCTGTGATTGGCTTC
ACAGCTAACGAATTTCATCATCTTTTCTTGGATTGGTTAGACCGTTCTCC
AATCACAGCTCTCTGGATTGGACTTCGACCGAATGTTTTATGCAAGGATG
TTAAACTATTCGAATCCATTATGTCCAGTAATAAAGTTCTTACAAAGTCT
TCTAATTACTGGGTGTTTGATGACTGGCTTGGATTGAACTTATTCACAAG
TACTGGGGCGTTTTGGAGAAGGCGTAGAAAGTTGTTAACGCCTTCATTTC
ATTTCAACATTTTAACAGAGTTTCTACCAACTATGGTGAAACATTCGCAA
GACCTGGTTaaagctttgaaaaaacaaccagaTTCATTCAATGCGTTTAA
AGTGATGAAAACCTATTCTCTCGGTGTCATATTAGAAACATCCATGGGTG
TGGAAAATGACTTCATCGATATCGCTTTGGATGTTGCAAACAATGAAACC
GTTAAAGATTCACCAGGTGAACACCAAGCAAACATTTTCAGATTCTTAAA
AGCTATTGATCGCCTATTGGTCATTCTTGTAAACCGCAACGATCGACCTT
GGCAATGGTATAAAACAACATTCCAGCTCACACCAGTCGGTCAAGACTTT
TACGAGACGTTAGATTTCGTGAAAAAGTTTGGTACCAATATCATAGAGAA
GCGTATTGAGCAGCTAAAGGAGAAACCCATGTCAGATGAAAAGCAAATTA
TTTTGTTAGATAGATTGTTAAAATCATTACAAAATGGTGAAGTAAATGTC
GAAGATGTATTGAACGAGACGCAAGGTTTCATGTTCGCAGGTTATGATAC
AGTAGCAACAGCTCTTAGTTGGTGTCTCTTCATGATTGGCTCACATCCGG
AAATCCAACAAAAAGCTTTTGAAGAGGTTAAGAacgttgaaaaattgaat
ctcCCTCTAAATGAGATGGTTAAGGAGTTAAAATATGTCGAATGTGTAAT
CAAGGAGACGTTGAGGATTCATCCATCAGCTCCAATCGTTAGCCGAGAAA
TCGAAGAAGAAATGGTCTTCGATTCCTGGAAATTCCCTAAAGGTACCACT
TTTAGTATCTGCATATTAGCTATGCAGCGTGACCCAAACAACTGGTCAGA
TCCGATGGTTTTCAAACCCGAAAGATTTGGTTCTCCTGAGCATGACTGGA
ACCCATTCGCTTTTATACCGTTTTCAGCTGGACCAAGAAATTGCATAGGT
CAGCGTTTTGCAATGATGGAGATGAAATGCACTTTGTATCATTTGTTATT
GAATTTCGAGATTGTTGCCAAGCAGCGAGCGGAGGATTTATTGGAGACTA
TTGGAGTTATTCATGGAGTGATGAATGAGGAAGGACTTCAGATTGAAATG
AAACCAAggaatttatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011317XLOC_011317Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020144-proteinTCONS_00020144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020144-exon-sc0000349-1491911889:152461..154502TCONS_00020144-exon-sc0000349-1491911889:152461..154502Clytia hemisphaericaexon
TCONS_00020144-exon-sc0000349-1510915933:152461..154502TCONS_00020144-exon-sc0000349-1510915933:152461..154502Clytia hemisphaericaexon
TCONS_00020144-exon-sc0000349-1575043694:152461..154502TCONS_00020144-exon-sc0000349-1575043694:152461..154502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:152461..154502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.76057	8.30464	4.44711	3.91758	1.69659	1.25425	4.82566	5.94049	5.56977	4.99006	5.35332	5.58151	5.94705	6.64396	6.5393	6.49595	4.1555	6.00168	3.31254	3.35869	3.70528	2.95741	7.53133	6.31503	6.35887	6.26862	2.04355	1.47283	4.29651	4.09293
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00020144 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.323e-80
Identity = 174/505 (34.46%), Postives = 272/505 (53.86%), Query Frame = -2 
Query:  497 TRPWSHISNIP--LQIYPILGHIPSVIGFTANEFHHLFLDWLDRS---PITALWIGLRPNVLCKDVKLFESIMSSNKVLTKSSNYWVFDDWLGLNLFTSTGAFWRRRRKLLTPSFHFNILTEFLPTMVKHSQDLVKALKKQ--PDSFNAFKVMKTYSLGVILETSMGVENDFIDIALDVANNETVKDSPGEHQANIFRFLKAIDRLLVILVNRNDRPWQWYKTTFQLTPVGQDFYETLDFVKKFGTNIIEKRIEQL----------KEKPMSDEKQIILLDRLLKSLQNGEVNV---EDVLNETQGFMFAGYDTVATALSWCLFMIGSHPEIQQKAFEEVKNV-EKLNLPLN-EMVKELKYVECVIKETLRIHPSAPIVSREIEEEMVFDSWKFPKGTTFSICILAMQRDPNNWSDPMVFKPERFGSPE--HDWNPFAFIPFSAGPRNCIGQRFAMMEMKCTLYHLLLNFEIVAKQRAEDLLETIGVIHGVMNEEGLQIEMKPRN 1939
             R W  +  IP   + YP++GH   ++     EF    +++ +     P+  LW+G  P V   + +  E I++S+K + KSS Y   + WLGL L TSTG  WR RRK+LTP+FHF IL +FL  M + +  LVK L+K    ++FN F  +   +L +I ET+MG                    + G    +   +++A+ R+  ++  R   PW W    + +   G +  ++L  +  F  ++I +R  ++          +    S  K+   LD LL S+ + E N    ED+  E   FMF G+DT A A++W L+++GS+PE+Q+K   E+ +V  K + P   E +K+L+Y+ECVIKETLR+ PS P+ +R + E+     ++  KGT   I   A+ RDP  + +P  F+PERF  PE     +P+A++PFSAGPRNCIGQ+FA+ME K  L  +L +F I + Q+ E+L     +I    N  G+ I++K RN
Sbjct:   41 ARKWQQMRPIPTVARAYPLVGH-ALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHINQEAFNCFFYITLCALDIICETAMG-------------------KNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLL-SVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF-FPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSN--GIWIKLKRRN 521
The following BLAST results are available for this feature:
BLAST of TCONS_00020144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V23.323e-8034.46Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
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