TCONS_00019798 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019798
Unique Name	TCONS_00019798
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2071

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000336:96270..99095-
coding sequence from alignment at sc0000336:96270..99095-

transcript sequence

>TCONS_00019798 ID=TCONS_00019798|Name=TCONS_00019798|organism=Clytia hemisphaerica|type=transcript|length=2071bp
AAGGGACATGCAATCTACCTTTGTCTTTGCAGGTTAAATAATAAATGTGA
GCAGAAAGATAATTGTGAGAGGAATGCGTTCCATTTCGTTGGTCAACAAG
TTGGAAGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGT
GGATATTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATG
GTGAACTCCATGCTTACAAAGGCTTGGACACGACAAAGCCATGGAAGTTG
AGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGGAGGACATGTTCGAAG
CAAAGATGAAACGTTACTTTGTGCATTAGATTCTGAAGGGAGGTGTAATC
TGTTTGACGTCAAAGAAGAACACGTGACATCTGACCATGATGGATCGTAC
GTTGGTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAAT
GCGTTTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCC
TGGAAGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACT
GATCGTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGATCCCTTGGA
TGACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACAAAA
AATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACACCTT
TCGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTACCAT
CAACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTACTCC
TGAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGCACC
ACTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAACGGTGGATA
TTGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCAGCA
CGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAAGACTCTTACCCA
ATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTTCCAACAACAACA
CATCAACACAGAAATCATCGGAGGTATTCGGCGACAGAAGGGAGCTACAG
GCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATTATTCTTGATAAT
ACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTCTAAAAACAACTG
GTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTGATGACGAAATCG
TTTTGTGTGACCTGAACGGTATGACGTACATCATCGATAAAGAACGAAAT
ATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTTTTGTGCTGGTTA
CTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTTACGTCACTTTGA
GTGGAAAGATTCATTTATATTACGATGTTTGGATCGACGCCATCAAAGTG
CGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAGGAAACCGGAGCT
GCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTGAAGTGGACCATG
AAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTCAATCGTTTCTCA
TCCTCGCTTTTTACCAAGAATAGATAAACTGTAGCATCATACGTCTTACA
TATTGTTTATACCAATATTGTTGTACCAGCTACCTTTCAAACAGAATGAT
TGGTTTCAATCCTGTGCAACCTTTGTGGTTGTCAAAGTAAACAGACTCAT
ACTTAACGCGTTCGCTGCCCACTATAAAGTCGTTGTAGAGGAGTCAAAAT
ACCGGTAATACTTCAAagggccataacttttgatacaaaaaCATTTGact
actttttttcaatttgaaggAATTTGAAGTATTTTTTGAGGCTACAACGT
ACAAGAAACCCTTTGAGTGAAACTATCAACGAAATTAGGGGAGATCAATT
TTATACGAAAACAAGATAACGATGTAAGTGCATTTTTAGATTGTCCAAAA
TAAAGGGTAAAGTTTCATTCTTGTAGAATCAAGAAATCGTGTTCTGTTTA
TTGTGTCACTCTGTGTGCCTT

Run BLAST on NCBI

protein sequence of TCONS_00019798-protein

>TCONS_00019798-protein ID=TCONS_00019798-protein|Name=TCONS_00019798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MRSISLVNKLEVDYKGSLFKSAICLVDIDEDGLNELCVGFTNGELHAYKG
LDTTKPWKLSKGLGSLVVLCGGHVRSKDETLLCALDSEGRCNLFDVKEEH
VTSDHDGSYVGSPPSGAPTCSPTEEMRLVHKEHLPPNAKVAILEDVDNDG
VAELIIGYTDRYVRIYKWTVQGDPLDDVEKKLSKQNTEETDKKSTLSFSL
SLSKEPKHLSPAPRQKSADTAEEGTINNNNSTPYHPVGSFVLLKQFSLIG
QIGSLAVCTTVEGLNQLIVSQPNGGYCILGQYDEDGFTENISTPTSVEAP
SPSNQDSYPIFYPITAYGNRSFQQQHINTEIIGGIRRQKGATGVIGLATH
DGYFIILDNTYFSGQNPVKNSSKNNWFAMSKVDVTNDGDDEIVLCDLNGM
TYIIDKERNIVSYNFNENVAAFCAGYYGNKGRSTPCLCYVTLSGKIHLYY
DVWIDAIKVRCVHAALIEKIKRKPELHYLLELLRGESGEVDHEKLQSLVK
QSASLNRFSSSLFTKNR

Run BLAST on NCBI

transcript from alignment at sc0000336:96270..99095-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019798 ID=TCONS_00019798|Name=TCONS_00019798|organism=Clytia hemisphaerica|type=transcript|length=2826bp|location=Sequence derived from alignment at sc0000336:96270..99095- (Clytia hemisphaerica)
AAGGGACATGCAATCTACCTTTGTCTTTGCAGGTTAAATAATAAATGTGA
GCAGAAAGATAATTGTGAGAGGAATGCGTTCCATTTCGTTGGTCAACAAG
TTGGAAGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGT
GGATATTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATG
GTGAACTCCATGCTTACAAAGGTATTCATCCACTTTCATCGCAACTCGAA
GATCTCGCTCACAGTTGATCTTCTGGTCATTATTGTGAGAATTGATAAAT
AATGATGTAAAGTATAACATATTTCACTTTTATTTGCTAGGCTTGGACAC
GACAAAGCCATGGAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGT
GCGGAGGACATGTTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGAT
TCTGAAGGGAGGTGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATC
TGACCATGATGGATCGTACGTTGTGAGTTTGCTTCCTCTCATGTTCTAAA
ACTTCATCGGCCAAACTTCATTACTCATATTCAGCCACAATACAGTCATT
TTTTGTAATCACTTAGAACTTTTATTGAGCTGTCGCACTTTTTCTAAAGG
GTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAATGCGT
TTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCCTGGA
AGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACTGATC
GTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGGTTTGTTCGTTAGT
CATCCAGCTGGTTATTAGCTTGATGCTTTATCATTTCACGTTACTCCTCA
TGTNATGTTTGTTAGTCATCCAGCTGGTTATTAGCTTGATGCTTTATCAT
TTCACGTTACTCCTCATGTCAAGTTCCTAGTTACAGGGAAATCACCCTAA
TTAGCTAACACTTAACGGATTTTCTTCCGCACCATCAATCGTTCGTGTAA
GCGAGGGGATCTTTTAAAGTTTTTTATAACTACTGTGTTACTTTGTACGA
TTAGGCGTCCCACTGCCTGTTATTGTCTCTTTTTTACTTTTCCTGTAGAT
CCCTTGGATGACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAAC
GGACAAAAAATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCA
AACACCTTTCGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAA
GGTACCATCAACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTT
TGTACTCCTGAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTG
TGTGCACCACTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAAC
GGTGGATATTGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAA
CATCGTGCGTTTGTATTTACTTTCTGTCTGTATAACCCTCCTATTGAGTC
TATTGAGTTTAAAAATTGAGAGAGGAGAAAGTGAACAGTCAAAGCTTCTC
AGTTTGCAAGCTTGTACTTGATACATACCATGCATATAACAAGCCAATTT
TACCCGTCAGATTCAAAGCGTTCAACTGATTTGTTTTGTTTTTGTTTCTA
GAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAAGACTCTT
ACCCAATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTTCCAACAA
CAACACATCAACACAGAAATCATCGGAGGTATTCGGCGACAGAAGGGAGC
TACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATTATTCTTG
ATAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTCTAAAAAC
AACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTGATGACGA
AATCGTTTTGTGTGACCTGAACGGTATGACGTACATCATCGATAAAGAAC
GAAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTTTTGTGCT
GGTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTTACGTCAC
TTTGAGTGGAAAGATTCATTTATATTACGATGTTTGGATCGACGCCATCA
AAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAGGAAACCG
GAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTGAAGTGGA
CCATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTCAATCGTT
TCTCATCCTCGCTTTTTACCAAGAATAGATAAACTGTAGCATCATACGTC
TTACATATTGTTTATACCAATATTGTTGTACCAGCTACCTTTCAAACAGA
ATGATTGGTTTCAATCCTGTGCAACCTTTGTGGTTGTCAAAGTAAACAGA
CTCATACTTAACGCGTTCGCTGCCCACTATAAAGTCGTTGTAGAGGAGTC
AAAATACCGGTAATACTTCAAAGGGCCATAACTTTTGATACAAAAACATT
TGACTACTTTTTTTCAATTTGAAGGAATTTGAAGTATTTTTTGAGGCTAC
AACGTACAAGAAACCCTTTGAGTGAAACTATCAACGAAATTAGGGGAGAT
CAATTTTATACGAAAACAAGATAACGATGTAAGTGCATTTTTAGATTGTC
CAAAATAAAGGGTAAAGTTTCATTCTTGTAGAATCAAGAAATCGTGTTCT
GTTTATTGTGTCACTCTGTGTGCCTT

Coding sequence (CDS) from alignment at sc0000336:96270..99095-

>TCONS_00019798 ID=TCONS_00019798|Name=TCONS_00019798|organism=Clytia hemisphaerica|type=CDS|length=7770bp|location=Sequence derived from alignment at sc0000336:96270..99095- (Clytia hemisphaerica)
AGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAAGACTCTTA
CCCAATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTTCCAACAAC
AACACATCAACACAGAAATCATCGGAGGTATTCGGCGACAGAAGGGAGCT
ACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATTATTCTTGA
TAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTCTAAAAACA
ACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTGATGACGAA
ATCGTTTTGTGTGACCTGAACGGTATGACGTACATCATCGATAAAGAACG
AAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTTTTGTGCTG
GTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTTACGTCACT
TTGAGTGGAAAGATTCATTTATATTACGATGTTTGGATCGACGCCATCAA
AGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAGGAAACCGG
AGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTGAAGTGGAC
CATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTCAATCGTTT
CTCATCCTCGCTTTTTACCAAGAATAGATAAATCCCTTGGATGACGTCGA
GAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACAAAAAATCCACTT
TGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACACCTTTCGCCTGCA
CCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTACCATCAACAACAA
TAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTACTCCTGAAGCAAT
TCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGCACCACTGTGGAA
GGATTGAACCAATTGATCGTGTCACAACCAAACGGTGGATATTGCATCTT
GGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCGGTAGTCCACCAT
CTGGCGCTCCAACCTGTTCGCCAACAGAAGAAATGCGTTTGGTGCACAAA
GAACACCTTCCGCCCAACGCCAAGGTGGCCATCCTGGAAGATGTGGACAA
TGATGGAGTGGCGGAGCTGATCATCGGCTATACTGATCGTTATGTTCGCA
TCTATAAGTGGACCGTTCAAGGAGGCTTGGACACGACAAAGCCATGGAAG
TTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGGAGGACATGTTCG
AAGCAAAGATGAAACGTTACTTTGTGCATTAGATTCTGAAGGGAGGTGTA
ATCTGTTTGACGTCAAAGAAGAACACGTGACATCTGACCATGATGGATCG
TACGTTATGCGTTCCATTTCGTTGGTCAACAAGTTGGAAGTGGATTACAA
AGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGTGGATATTGACGAGGATG
GTTTGAACGAACTGTGTGTTGGCTTCACTAATGGTGAACTCCATGCTTAC
AAAGAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAAGACT
CTTACCCAATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTTCCAA
CAACAACACATCAACACAGAAATCATCGGAGGTATTCGGCGACAGAAGGG
AGCTACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATTATTC
TTGATAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTCTAAA
AACAACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTGATGA
CGAAATCGTTTTGTGTGACCTGAACGGTATGACGTACATCATCGATAAAG
AACGAAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTTTTGT
GCTGGTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTTACGT
CACTTTGAGTGGAAAGATTCATTTATATTACGATGTTTGGATCGACGCCA
TCAAAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAGGAAA
CCGGAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTGAAGT
GGACCATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTCAATC
GTTTCTCATCCTCGCTTTTTACCAAGAATAGATAAATCCCTTGGATGACG
TCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACAAAAAATCC
ACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACACCTTTCGCC
TGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTACCATCAACA
ACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTACTCCTGAAG
CAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGCACCACTGT
GGAAGGATTGAACCAATTGATCGTGTCACAACCAAACGGTGGATATTGCA
TCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCGGTAGTCCA
CCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAATGCGTTTGGTGCA
CAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCCTGGAAGATGTGG
ACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACTGATCGTTATGTT
CGCATCTATAAGTGGACCGTTCAAGGAGGCTTGGACACGACAAAGCCATG
GAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGGAGGACATG
TTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGATTCTGAAGGGAGG
TGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATCTGACCATGATGG
ATCGTACGTTATGCGTTCCATTTCGTTGGTCAACAAGTTGGAAGTGGATT
ACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGTGGATATTGACGAG
GATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATGGTGAACTCCATGC
TTACAAAGAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAACCAA
GACTCTTACCCAATCTTCTACCCGATCACAGCATACGGTAATCGTTCTTT
CCAACAACAACACATCAACACAGAAATCATCGGAGGTATTCGGCGACAGA
AGGGAGCTACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTTCATT
ATTCTTGATAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATTCCTC
TAAAAACAACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGACGGTG
ATGACGAAATCGTTTTGTGTGACCTGAACGGTATGACGTACATCATCGAT
AAAGAACGAAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTGCTTT
TTGTGCTGGTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTGTGTT
ACGTCACTTTGAGTGGAAAGATTCATTTATATTACGATGTTTGGATCGAC
GCCATCAAAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCAAGAG
GAAACCGGAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGCGGTG
AAGTGGACCATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTCTCTC
AATCGTTTCTCATCCTCGCTTTTTACCAAGAATAGATAAATCCCTTGGAT
GACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACAAAAA
ATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACACCTTT
CGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTACCATC
AACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTACTCCT
GAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGCACCA
CTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAACGGTGGATAT
TGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCGGTAG
TCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAATGCGTTTGG
TGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCCTGGAAGAT
GTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACTGATCGTTA
TGTTCGCATCTATAAGTGGACCGTTCAAGGAGGCTTGGACACGACAAAGC
CATGGAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGGAGGA
CATGTTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGATTCTGAAGG
GAGGTGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATCTGACCATG
ATGGATCGTACGTTATGCGTTCCATTTCGTTGGTCAACAAGTTGGAAGTG
GATTACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGTGGATATTGA
CGAGGATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATGGTGAACTCC
ATGCTTACAAAGAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAAGCAA
CCAAGACTCTTACCCAATCTTCTACCCGATCACAGCATACGGTAATCGTT
CTTTCCAACAACAACACATCAACACAGAAATCATCGGAGGTATTCGGCGA
CAGAAGGGAGCTACAGGCGTTATAGGGCTTGCAACGCATGATGGTTATTT
CATTATTCTTGATAATACATATTTCTCTGGTCAAAACCCAGTTAAAAATT
CCTCTAAAAACAACTGGTTCGCTATGTCCAAAGTTGACGTCACAAATGAC
GGTGATGACGAAATCGTTTTGTGTGACCTGAACGGTATGACGTACATCAT
CGATAAAGAACGAAATATTGTAAGTTATAATTTCAATGAGAACGTCGCTG
CTTTTTGTGCTGGTTACTATGGAAACAAAGGACGCTCTACGCCATGTCTG
TGTTACGTCACTTTGAGTGGAAAGATTCATTTATATTACGATGTTTGGAT
CGACGCCATCAAAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAGATCA
AGAGGAAACCGGAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGAGAGC
GGTGAAGTGGACCATGAAAAACTGCAGTCACTTGTTAAGCAATCGGCTTC
TCTCAATCGTTTCTCATCCTCGCTTTTTACCAAGAATAGATAAATCCCTT
GGATGACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACGGACA
AAAAATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAAACAC
CTTTCGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAGGTAC
CATCAACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTTGTAC
TCCTGAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGTGTGC
ACCACTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAACGGTGG
ATATTGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAACATCG
GTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAATGCGT
TTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCCTGGA
AGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACTGATC
GTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGGCTTGGACACGACA
AAGCCATGGAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGTGCGG
AGGACATGTTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGATTCTG
AAGGGAGGTGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATCTGAC
CATGATGGATCGTACGTTATGCGTTCCATTTCGTTGGTCAACAAGTTGGA
AGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGTGGATA
TTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATGGTGAA
CTCCATGCTTACAAAGAGCACGCCAACTAGCGTGGAAGCGCCGTCGCCAA
GCAACCAAGACTCTTACCCAATCTTCTACCCGATCACAGCATACGGTAAT
CGTTCTTTCCAACAACAACACATCAACACAGAAATCATCGGAGGTATTCG
GCGACAGAAGGGAGCTACAGGCGTTATAGGGCTTGCAACGCATGATGGTT
ATTTCATTATTCTTGATAATACATATTTCTCTGGTCAAAACCCAGTTAAA
AATTCCTCTAAAAACAACTGGTTCGCTATGTCCAAAGTTGACGTCACAAA
TGACGGTGATGACGAAATCGTTTTGTGTGACCTGAACGGTATGACGTACA
TCATCGATAAAGAACGAAATATTGTAAGTTATAATTTCAATGAGAACGTC
GCTGCTTTTTGTGCTGGTTACTATGGAAACAAAGGACGCTCTACGCCATG
TCTGTGTTACGTCACTTTGAGTGGAAAGATTCATTTATATTACGATGTTT
GGATCGACGCCATCAAAGTGCGTTGTGTGCATGCTGCTCTCATTGAGAAG
ATCAAGAGGAAACCGGAGCTGCATTACCTGTTGGAACTTTTGCGTGGTGA
GAGCGGTGAAGTGGACCATGAAAAACTGCAGTCACTTGTTAAGCAATCGG
CTTCTCTCAATCGTTTCTCATCCTCGCTTTTTACCAAGAATAGATAAATC
CCTTGGATGACGTCGAGAAAAAGTTGAGCAAACAAAACACTGAAGAAACG
GACAAAAAATCCACTTTGTCTTTTTCACTCTCGTTATCGAAAGAACCCAA
ACACCTTTCGCCTGCACCACGACAAAAGAGTGCTGATACCGCTGAAGAAG
GTACCATCAACAACAATAACAGCACGCCTTATCACCCAGTTGGTTCGTTT
GTACTCCTGAAGCAATTCTCTTTGATCGGACAGATCGGTTCATTGGCTGT
GTGCACCACTGTGGAAGGATTGAACCAATTGATCGTGTCACAACCAAACG
GTGGATATTGCATCTTGGGCCAGTACGATGAAGATGGTTTCACCGAAAAC
ATCGGTAGTCCACCATCTGGCGCTCCAACCTGTTCGCCAACAGAAGAAAT
GCGTTTGGTGCACAAAGAACACCTTCCGCCCAACGCCAAGGTGGCCATCC
TGGAAGATGTGGACAATGATGGAGTGGCGGAGCTGATCATCGGCTATACT
GATCGTTATGTTCGCATCTATAAGTGGACCGTTCAAGGAGGCTTGGACAC
GACAAAGCCATGGAAGTTGAGCAAAGGGTTAGGATCATTGGTTGTGTTGT
GCGGAGGACATGTTCGAAGCAAAGATGAAACGTTACTTTGTGCATTAGAT
TCTGAAGGGAGGTGTAATCTGTTTGACGTCAAAGAAGAACACGTGACATC
TGACCATGATGGATCGTACGTTATGCGTTCCATTTCGTTGGTCAACAAGT
TGGAAGTGGATTACAAAGGGAGTTTGTTCAAAAGCGCTATTTGTCTGGTG
GATATTGACGAGGATGGTTTGAACGAACTGTGTGTTGGCTTCACTAATGG
TGAACTCCATGCTTACAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011133	XLOC_011133	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019798-protein	TCONS_00019798-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000336	supercontig	sc0000336:96270..99095 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.399	25.6779	22.911	20.5575	16.2905	10.6116	17.9303	16.756	17.5273	17.7209	17.7016	16.6106	16.5749	20.5107	28.6128	30.7103	24.8777	29.2332	14.7857	13.5222	18.3115	17.3603	26.0847	25.7009	16.1186	16.6142	8.25589	5.40807	17.5105	18.099

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR031793	Itfg2

Blast

[Close]

BLAST of TCONS_00019798 vs. Swiss-Prot (Human)
Match: ITFG2 (KICSTOR complex protein ITFG2 OS=Homo sapiens GN=ITFG2 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.124e-70
Identity = 155/490 (31.63%), Postives = 245/490 (50.00%), Query Frame = 2

Query:   74 MRSISLVNKLEVDYKGSLFKSAICLVDIDEDGLNELCVGFTNGELHAYKGLDTTKPWKLSKGLGSLVVLCGGHVRSKDETLLCALDSEGRCNLFDVKEEHV--TSDHDGSYVGSPPSGAPTCSPTEEMRLVHKEHLPPNAKVAILEDVDNDGVAELIIGYTDRYVRIYKWTVQGDPLDDVEKKLSKQNTEETDXXXXXXXXXXXXXEPKHLSPAPRQKSADTAEEGTINNNNSTPYHPVGSFVLLKQFSLIGQIGSLAVCTTVEGLNQLIVSQPNGGYCILGQYDEDGFTENISTPTSVEAPSPSNQDSYPIFYPITAYGNRSFQQQHINTEIIGGIRRQKG----ATGVIGLATHDGYFIILDNTYFSGQNPVKNSSKNNWFAMSKVDVTNDGDDEIVLCDLNGMTYIIDKERNIVSYNFNENVAAFCAGYYGNK-GRSTPCLCYVTLSGKIHLYYDVWIDAIKVRCVHAALIEKIKRKPELHYLLELL 1522
            MRS+S V ++ +++ GSLF  AICL D+D D LNEL VG T+G++  YK  D ++PW      G L  +  G V +K + LL A+ +EG  +LFD+    V   S H  + +G            EE R V K+H+P N KV ++ D+D DG  EL++GYTDR VR ++W   G+                                P+HL+                           G  V LK++ L GQ+ SL+V     GL +L+VSQP   Y IL       + ++  +P + E P+  ++++      +    +     ++++T +IG I++  G     +G+  L T DG   +++    + +        +  FA+ K+DVT +G +E+V C  +G TYIID  R +V +  +EN+ AFCAG Y  K GR++PCL YVT + KI++Y++V ++    R     L++ ++ KPE H LL+ L
Sbjct:    1 MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKN-DDSRPWLTCSCQGMLTCVGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIG------------EEQRPVFKQHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGE-------------------------------GPEHLT---------------------------GQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQPGCAYAILLCT----WKKDTGSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYACKEGRNSPCLVYVTFNQKIYVYWEVQLE----RMESTNLVKLLETKPEYHSLLQEL 411

The following BLAST results are available for this feature:

BLAST of TCONS_00019798 vs. Swiss-Prot (Human)

BLAST of TCONS_00019798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ITFG2	7.124e-70	31.63	KICSTOR complex protein ITFG2 OS=Homo sapiens GN=I...	[more]

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TCONS_00019798 (transcript) - C. hemisphaerica