TCONS_00018903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018903
Unique NameTCONS_00018903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018903 ID=TCONS_00018903|Name=TCONS_00018903|organism=Clytia hemisphaerica|type=transcript|length=2166bp
acggtatattcAGTAGAGCACACAGTCTTATTTTTGCATCCATAAACTCA
GCATCTAACAACACAATTGAACCACAATTTCTGTAACAGAGACACCatga
caaatgaaatttcactgCTAGCACGTTGTTTCTAAtttcttttcattcaa
aatggccATCGCTGATTGGAGAATTGTAGAGCGCCCACTGCCAAACTGCC
CACTGCCCACCACCCTAAATATAATGAACAAATTACGGGTGTGTAATTTG
CCACTTGGATGACATTATGTGCTCCATCATGATGCTGCAAATTTCTTCTC
CTTCATTTTGGAGAAAGGCAACTTGGAGGAAAGTTGAAAATGGTACCAAA
ATTTAGCTCATGAAAGCTGCTACTCAATTTTACAAACTTTGAAAGCTCCA
CAACTTGCtctcaattttacaaaaaatcgaGCTCAAAATTGCACGGAAAG
CTGGACTGATATTATGAAGAAAATTTGGTTGGTTTCCCAACAAGCCAATG
TTTGACAGTAGATCGATTTCTAGACACTTCAAAAGTTCCTTCTGATCTTT
TTGGTTTTACCATACAAGTGACAAGAGTGTCTGCATGTcaagctaaaaaa
aaaaacatacaatCATTAGGCTAGGTATGGATAGGTTTTCTGTCTCACTG
TCTGAAAGCGCCTGCTGCTTgtgaattttatattttccaaTAAAGTCTTT
TACCAACTaaacaacaattttttatcaaccaatattttgaaaagtaaaat
gggtgcaaaatgaagatattttatTCTTGCCATGTTAATATGAGCTTCCT
TTGTCTATTTCAGTATTATTTGCATGGCAGTTTGGGTTTTGGTTTTCTTT
TAAACTTCAAGCTAAACTATAAGCAATGGGTGCGCGTACATATGTCAACT
GGGCTAGCTTAAAAAATTGGAACATTGAATTTtagaatcaaaataaaatt
tatttgtcaTCTCCTCAACAgttttttaaagattgcgTAAAAGCAAAACA
TGAGTTCAAATCGCTCCATTGTTTCTCAGATAGAATACTGTGAAAGAAGA
ATCAAGAGTTATGAAGATCGTCTGGATGACATTGGCATGACTCTCCGTAA
AGATAAACTAGCAAATGAAAAATATGAACAGTTGTCTGAAGAGAGGGATC
AATTAACATCTACTGTTACTGAATATAaAACCCAGTTGAAAGAATTGCGC
CATGAGAACAGAAGAAGCATGATGTTGTCAATGGCAATCATGTTATTCTT
TGTTATAGCTTATTTTGCATTTGTACAAAGTTGAATGGCAGAAGAAAGAA
AATCTAGaattcaaaaacaaatcaaaaagatGCCtccaaagaaaaaagta
aaaaagaagcGTGCAAAAAGTGCAAAAGCTAGTGAACCAACAATCGAAGA
AAAATATCAGCAAACTATTCAAAAGAttacttctctacaagatcatCTGG
CAATGCGCACTGAAATAGCACGTCGTTCACAGCTCAAATCACATGATTTA
CGAGACCAGATGAGAAAAGCTAATGATGAGATAATTGAAGAACGCAAAAG
CAAACACGATATATCATCAGATCTTATCAGGCAATACAAAAGTATGCAAA
AAGATTTGACGCATAAGACTTATCTACTGGAAAACAAAATCCTTGATTTG
ACTACACGTTTAACAACTACTGAACAAGAATTAGCTAATGAGCGTACCGA
GAAACAAAGAATCATTGAGGAAAAAGATTCAGTGATTTTTAAATTAGAGA
GGAGGCTTGATCATATTGAAAATGCatatgagaatattttacatGATGCT
TTTGATGCGATTGTAGATAAAATGCAAGTAGCTCGGAGTGCTTGGCAAAA
TGAATCAATGGAAATTCAAAGTAGAAACAAAGCTTTGTTATCAAAGTTTG
GTTTGAATCCATTAGAAATTTAAACATATAGTTTGTTTTCTATATTAATT
TCTTAGCCTCGGGCTAATTAGCTGAGGGATAAACTATAACTGGCAACACA
AATAACCATTGTATTATTTGCGTTATACTAGAGTgtaatattttggaaaa
tttgtacATAAATAATATATCGATGATATTTTTATCAGATGATGAGTACT
AATATATTTCTAATATCAGAATAATGTGTTTTAAaattgatattcatgat
gtaatcttttatacag
Run BLAST on NCBI

protein sequence of TCONS_00018903-protein

>TCONS_00018903-protein ID=TCONS_00018903-protein|Name=TCONS_00018903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MAEERKSRIQKQIKKMPPKKKVKKKRAKSAKASEPTIEEKYQQTIQKITS
LQDHLAMRTEIARRSQLKSHDLRDQMRKANDEIIEERKSKHDISSDLIRQ
YKSMQKDLTHKTYLLENKILDLTTRLTTTEQELANERTEKQRIIEEKDSV
IFKLERRLDHIENAYENILHDAFDAIVDKMQVARSAWQNESMEIQSRNKA
LLSKFGLNPLEI
Run BLAST on NCBI

transcript from alignment at sc0000313:4047..8218+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018903 ID=TCONS_00018903|Name=TCONS_00018903|organism=Clytia hemisphaerica|type=transcript|length=4172bp|location=Sequence derived from alignment at sc0000313:4047..8218+ (Clytia hemisphaerica)
acggtatattcAGTAGAGCACACAGTCTTATTTTTGCATCCATAAACTCA
GCATCTAACAACACAATTGAACCACAATTTCTGTAACAGAGACACCatga
caaatgaaatttcactgCTAGCACGTTGTTTCTAAtttcttttcattcaa
aatggccATCGCTGATTGGAGAATTGTAGAGCGCCCACTGCCAAACTGCC
CACTGCCCACCACCCTAAATATAATGAACAAATTACGGGTGTGTAATTTG
CCACTTGGATGACATTATGTGCTCCATCATGATGCTGCAAATTTCTTCTC
CTTCATTTTGGAGAAAGGCAACTTGGAGGAAAGTTGAAAATGGTACCAAA
ATTTAGCTCATGAAAGCTGCTACTCAATTTTACAAACTTTGAAAGCTCCA
CAACTTGCtctcaattttacaaaaaatcgaGCTCAAAATTGCACGGAAAG
CTGGACTGATATTATGAAGAAAATTTGGTTGGTTTCCCAACAAGCCAATG
TTTGACAGTAGATCGATTTCTAGACACTTCAAAAGTTCCTTCTGATCTTT
TTGGTTTTACCATACAAGTGACAAGAGTGTCTGCATGTcaagctaaaaaa
aaaaacatacaatCATTAGGCTAGGTATGGATAGGTTTTCTGTCTCACTG
TCTGAAAGCGCCTGCTGCTTgtgaattttatattttccaaTAAAGTCTTT
TACCAACTaaacaacaattttttatcaaccaatattttgaaaagtaaaat
gggtgcaaaatgaagatattttatTCTTGCCATGTTAATATGAGCTTCCT
TTGTCTATTTCAGTATTATTTGCATGGCAGTTTGGGTTTTGGTTTTCTTT
TAAACTTCAAGCTAAACTATAAGCAATGGGTGCGCGTACATATGTCAACT
GGGCTAGCTTAAAAAATTGGAACATTGAATTTtagaatcaaaataaaatt
tatttgtcaTCTCCTCAACAggtgaattttcagaagaataAGAAGAAATC
AATACATACAGTACAGATTTAGATTTTCTTTCTGAGTACTTTTTGATTGG
ATCAATCATTTCCTTTATATTCTGATtttgagtttaatattttctGCTTA
TTAATCAGGTAgatccataaaagtatcacttatttattttagttttttaa
agattgcgTAAAAGCAAAACATGAGTTCAAATCGCTCCATTGTTTCTCAG
GTAAAATTTTAATGTTGTAATTGATATTTATAATGTTTTCATTCTTTTTA
AGATAATTCATTTTCAATGGATTAAATACATTAAATACTCAATTAGTAAT
AGGTTTCGTTAGAATCAATGTTTAGTTTCAGCTAAAATTCTTGGATTGTC
TTCATTCAGGGAAAAGGATGTATATACAGTATTTTATTTCTTCACAATAT
AGATAGAATACTGTGAAAGAAGAATCAAGAGTTATGAAGATCGTCTGGAT
GACATTGGCATGACTCTCCGTAAAGATAAACTAGCAAATGAAAAATAGTA
AGTCCTTGATTTActgttataaaatatttttaaatttttcaatcagAAAC
ATTTTCATGAGATAATATTTCACCAAAACtctctttatttatttttatcc
ttTACATTCTTTCTTAGTGAACAGTTGTCTGAAGAGAGGGATCAATTAAC
ATCTACTGTTACTGAATATAGTAAGCTTGCTTCTTTGCATTATTTATGCC
TCATCATTGTGCCTTTTTGATGTGTAAAGTACaagttgaaaaatgaataa
atgaCAGGCTAAGTTCcaaatatcaaattaaaaaaactttcctGTCATAA
CCGTATTTTGGATGAGGTTGTTGCCAACTTTAAATATGTCCCAAACCTAC
AGCAGAACTAATTAAAACTGTGATAGAACTTGATTATTAGTGGGGTATTA
GCAGATAGAAATACCAGGTGTGCTAAAAATAAGTTATGTACCCTCTTCAA
AGTGCAATTTCTTGAGATCTCCAAATAGATTGAAAGTTCGACAGAAAGTA
AATTTAATCCATTTACGAGgcctttaaaatatattttaaatattttttac
tgCAATTAAACTGCTTTATTCAGGCAAAAGGCAATAATTCACTGTTCTGT
TTTTTAATATAAATTTGAAAGGTCTATTTTAGACCGGTCttagaattttt
agaaagtgatttattattttatttcagcttataacttttgatctactgga
ccaaatttgataaatgacgtATGAAAATTTGAGTTTATCTTTCCTCTTGT
AGATAAAAAGCCTTTGAAAAGTCatttaaattgagaaatttcacATCAAA
CAGGAAAACTTATTTCTTGCACACCTGGTAAATAAGTTTAATACATGGTA
AGAAATGCTGAAGATCTTTTAGAACTTTTTAGAACTATATATTCCACATG
AACGAATCTTATAACTCAGTGAAtctgtttttgaaaataaataaaattta
atttattgtttatttttagaAACCCAGTTGAAAGAATTGCGCCATGAGAA
CAGAAGAAGCATGATGTTGTCAATGGCAATCATGTTATTCTTTGTTATAG
CTTATTTTGCATTTGTACAAAGTTGAATGGGTGGGGACTTCTTAAATAAT
AAATCCTATTTGAAGGGCATTTTTGCCTTCATGGATATATCCTAAGGGCA
TGATGTttagaatttacaaaaaaaattgatattaatGCCTTTTTTAAAGC
AAGCTCATTCTGTAATTTGCTAAATCTTGTTGGGTCACAGATTTTTCATC
CTTACCTGGCAAACTCTTACCCATTCGGAAAAGAATGTTTTTGGAGACTT
TTTGTGTAAAGTATAAAATTCTGAAAACAAATACAGCCATTTGAAGCTCA
AAATTCTGACAGATATTACAATATAATTAATGTCATATTTCGTCGTCGAA
GCAGAACTTGATCTAAATTTTGAGCTTTATGGCTTTCCCTTATTCGATTC
CTTggatatattttatttatgtatagaactttggaaaatttcatatttat
gTAACTTTTGGTACAAGGTACATCATTTTGTATTGTTATATCTAGAGAAT
TATAGGGCTTATCAAATAAATCAaccaaaaaaattgtatttgtaTCTTAA
AATAAAAGGGATCTGCTGTTGTAAAAAGCTTGATTTAATTCTGAATTGAG
TTTAGCATTAAGCTCTTCACCATCATAGTAACGAACAGGGGAACTCAGAA
CTGCTCtctgaaaaagattcttttcaaaTGGATGAATTTAAAGTTAGGGG
TTGTTTAAGATTGAGAAGTTGAATATAACTTTAATCTATTTCAGCAGAAG
AAAGAAAATCTAGaattcaaaaacaaatcaaaaagatGCCtccaaagaaa
aaagtaaaaaagaagcGTGCAAAAAGTGCAAAAGCTAGTGAACCAACAAT
CGAAGAAAAATATCAGCAAACTATTCAAAAGAttacttctctacaagatc
atCTGGCAATGCGCACTGAAATAGCACGTCGTTCACAGCTCAAATCACAT
GATTTACGAGACCAGATGAGAAAAGCTAATGATGAGATAATTGAAGAACG
CAAAAGCAAACACGATATATCATCAGATCTTATCAGGCAATACAAAAGTA
TGCAAAAAGATTTGACGCATAAGACTTATCTACTGGAAAACAAAATCCTT
GATTTGACTACACGTTTAACAACTACTGAACAAGAATTAGCTAATGAGCG
TACCGAGAAACAAAGAATCATTGAGGAAAAAGATTCAGTGATTTTTAAAT
TAGAGAGGAGGCTTGATCATATTGAAAATGCatatgagaatattttacat
GATGCTTTTGATGCGATTGTAGATAAAATGCAAGTAGCTCGGAGTGCTTG
GCAAAATGAATCAATGGAAATTCAAAGTAGAAACAAAGCTTTGTTATCAA
AGTTTGGTTTGAATCCATTAGAAATTTAAACATATAGTTTGTTTTCTATA
TTAATTTCTTAGCCTCGGGCTAATTAGCTGAGGGATAAACTATAACTGGC
AACACAAATAACCATTGTATTATTTGCGTTATACTAGAGTgtaatatttt
ggaaaatttgtacATAAATAATATATCGATGATATTTTTATCAGATGATG
AGTACTAATATATTTCTAATATCAGAATAATGTGTTTTAAaattgatatt
catgatgtaatcttttatacag

Coding sequence (CDS) from alignment at sc0000313:4047..8218+

>TCONS_00018903 ID=TCONS_00018903|Name=TCONS_00018903|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000313:4047..8218+ (Clytia hemisphaerica)
ATGGCAGAAGAAAGAAAATCTAGaattcaaaaacaaatcaaaaagatGCC
tccaaagaaaaaagtaaaaaagaagcGTGCAAAAAGTGCAAAAGCTAGTG
AACCAACAATCGAAGAAAAATATCAGCAAACTATTCAAAAGAttacttct
ctacaagatcatCTGGCAATGCGCACTGAAATAGCACGTCGTTCACAGCT
CAAATCACATGATTTACGAGACCAGATGAGAAAAGCTAATGATGAGATAA
TTGAAGAACGCAAAAGCAAACACGATATATCATCAGATCTTATCAGGCAA
TACAAAAGTATGCAAAAAGATTTGACGCATAAGACTTATCTACTGGAAAA
CAAAATCCTTGATTTGACTACACGTTTAACAACTACTGAACAAGAATTAG
CTAATGAGCGTACCGAGAAACAAAGAATCATTGAGGAAAAAGATTCAGTG
ATTTTTAAATTAGAGAGGAGGCTTGATCATATTGAAAATGCatatgagaa
tattttacatGATGCTTTTGATGCGATTGTAGATAAAATGCAAGTAGCTC
GGAGTGCTTGGCAAAATGAATCAATGGAAATTCAAAGTAGAAACAAAGCT
TTGTTATCAAAGTTTGGTTTGAATCCATTAGAAATTTAAATGGCAGAAGA
AAGAAAATCTAGaattcaaaaacaaatcaaaaagatGCCtccaaagaaaa
aagtaaaaaagaagcGTGCAAAAAGTGCAAAAGCTAGTGAACCAACAATC
GAAGAAAAATATCAGCAAACTATTCAAAAGAttacttctctacaagatca
tCTGGCAATGCGCACTGAAATAGCACGTCGTTCACAGCTCAAATCACATG
ATTTACGAGACCAGATGAGAAAAGCTAATGATGAGATAATTGAAGAACGC
AAAAGCAAACACGATATATCATCAGATCTTATCAGGCAATACAAAAGTAT
GCAAAAAGATTTGACGCATAAGACTTATCTACTGGAAAACAAAATCCTTG
ATTTGACTACACGTTTAACAACTACTGAACAAGAATTAGCTAATGAGCGT
ACCGAGAAACAAAGAATCATTGAGGAAAAAGATTCAGTGATTTTTAAATT
AGAGAGGAGGCTTGATCATATTGAAAATGCatatgagaatattttacatG
ATGCTTTTGATGCGATTGTAGATAAAATGCAAGTAGCTCGGAGTGCTTGG
CAAAATGAATCAATGGAAATTCAAAGTAGAAACAAAGCTTTGTTATCAAA
GTTTGGTTTGAATCCATTAGAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010596XLOC_010596Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018903-proteinTCONS_00018903-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018903-exon-sc0000313-1491911889:4047..5017TCONS_00018903-exon-sc0000313-1491911889:4047..5017Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:4047..5017TCONS_00018903-exon-sc0000313-1510915933:4047..5017Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:4047..5017TCONS_00018903-exon-sc0000313-1575043694:4047..5017Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1491911889:5189..5246TCONS_00018903-exon-sc0000313-1491911889:5189..5246Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:5189..5246TCONS_00018903-exon-sc0000313-1510915933:5189..5246Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:5189..5246TCONS_00018903-exon-sc0000313-1575043694:5189..5246Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1491911889:5449..5543TCONS_00018903-exon-sc0000313-1491911889:5449..5543Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:5449..5543TCONS_00018903-exon-sc0000313-1510915933:5449..5543Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:5449..5543TCONS_00018903-exon-sc0000313-1575043694:5449..5543Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1491911889:5664..5716TCONS_00018903-exon-sc0000313-1491911889:5664..5716Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:5664..5716TCONS_00018903-exon-sc0000313-1510915933:5664..5716Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:5664..5716TCONS_00018903-exon-sc0000313-1575043694:5664..5716Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1491911889:6516..6626TCONS_00018903-exon-sc0000313-1491911889:6516..6626Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:6516..6626TCONS_00018903-exon-sc0000313-1510915933:6516..6626Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:6516..6626TCONS_00018903-exon-sc0000313-1575043694:6516..6626Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1491911889:7341..8218TCONS_00018903-exon-sc0000313-1491911889:7341..8218Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1510915933:7341..8218TCONS_00018903-exon-sc0000313-1510915933:7341..8218Clytia hemisphaericaexon
TCONS_00018903-exon-sc0000313-1575043694:7341..8218TCONS_00018903-exon-sc0000313-1575043694:7341..8218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:4047..8218 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.7518	19.8483	6.19483	4.73339	20.5004	17.3527	2.97291	1.19988	10.4487	9.16511	11.7795	8.34502	4.30051	2.68812	4.24631	5.70006	5.9253	6.2308	2.00404	3.72978	2.65642	2.18352	16.3126	16.8889	0.54455	0.197292	1.4974	2.39512	4.50017	5.77175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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