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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018292 ID=TCONS_00018292|Name=TCONS_00018292|organism=Clytia hemisphaerica|type=transcript|length=3406bpRun BLAST on NCBI protein sequence of TCONS_00018292-protein >TCONS_00018292-protein ID=TCONS_00018292-protein|Name=TCONS_00018292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp MDHIKTPKVDNVRLEDVSSTLPGVKGTLHLTTTHLIFVDPNGTKETWILYRun BLAST on NCBI transcript from alignment at sc0000295:214180..238543- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018292 ID=TCONS_00018292|Name=TCONS_00018292|organism=Clytia hemisphaerica|type=transcript|length=24364bp|location=Sequence derived from alignment at sc0000295:214180..238543- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000295:214180..238543- >TCONS_00018292 ID=TCONS_00018292|Name=TCONS_00018292|organism=Clytia hemisphaerica|type=CDS|length=32448bp|location=Sequence derived from alignment at sc0000295:214180..238543- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018292 vs. Swiss-Prot (Human)
Match: MTMR6 (Myotubularin-related protein 6 OS=Homo sapiens GN=MTMR6 PE=1 SV=3) HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0 Identity = 283/544 (52.02%), Postives = 388/544 (71.32%), Query Frame = 2
Query: 203 MDHIKTPKVDNVRLED-VSSTLPGVKGTLHLTTTHLIFVDPNGTKETWILYSQISEVEKLPLTARGSAVRVRTRTFRHVKFVITRDRECTDVFDTIQKLSSPTKTDELYAFVYNPKHIELTQEAGWTLYDPVAEYERMEVPKSLWTRSTLNQNYKLCETYPNTLYFPSSVSAPLIKECAQFRSKSRLPALSYYNKKAQTALCRCAQPMAGLNNRCPEDEAMLQAIIKSTPGTSRMYIVDTRPKINAMANRAAGKGYENVAHYENIDFHFIGIENIHVMRQSLQKLIEVFDTKDLSMSSYLRGLEESGWFKHIKNVLDTSMFIARAVYYEKRSVLVHCSDGWDRTAQTCSMAQIMLDPYYRTIHGFQVLVEKEWLSFGHKFVHRYGLLSGDPKEVSPIFTQFLEACWQLTLQFPTGFQFNERFLLDLHEHLYSCQFGTFLGNCEKERKDSRLNRRTYSLWGYMWQNLPDYINPFYKEGLH--GVLNPSSHPQQFRFWRSLYNRYVDKVHPRESIADRICSLNDHNDSLRDHIRFLEKKIEKLATK 1825
M+HI+T KV+ V+L D S++ + GTL+LT THL+F+D + KETWIL+ I+ VEKL LT G + ++ + FR V F++ R+R+C D+++++ +LS K ++LYAF YNPK + + GW L D EY+RM VP S W S N++YK+CETYP LY P S P+I ++FRSK R P LSYY++ + A+CRC+QP++G + RC EDE +LQAI K+ P MY++DTRPK+NAMANRAAGKGYEN +Y NI F F+GIENIHVMR SLQKL+EV TK LS++ + GLE SGW +HIK V+D ++F+A+A+ E SVLVHCSDGWDRT+Q CS+ ++LD YYRTI GF VL+EK+W+SFGHKF R G L GDPKEVSP+FTQFLE W LT QFP F+F+E FLL +HEH++SCQFG FLGNC+KER++ +L +TYSLW ++ ++ Y+NP Y H VL P++ F+FWR++Y+++ +HPR+S+ + I ++N+ N L I+ LE KI++ K
Sbjct: 1 MEHIRTTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSH-QKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSARCLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGWLRHIKAVMDAAIFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTLHPRQSVFNIIMNMNEQNKQLEKDIKDLESKIKQRKNK 543 The following BLAST results are available for this feature:
BLAST of TCONS_00018292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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