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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016258 ID=TCONS_00016258|Name=TCONS_00016258|organism=Clytia hemisphaerica|type=transcript|length=2556bpRun BLAST on NCBI protein sequence of TCONS_00016258-protein >TCONS_00016258-protein ID=TCONS_00016258-protein|Name=TCONS_00016258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=786bp MGRKSWGELKERKKGPGRKARKQEHPEENLPFHLLNEEQQKNILKKRKKDRun BLAST on NCBI transcript from alignment at sc0000232:324372..335396+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016258 ID=TCONS_00016258|Name=TCONS_00016258|organism=Clytia hemisphaerica|type=transcript|length=11025bp|location=Sequence derived from alignment at sc0000232:324372..335396+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000232:324372..335396+ >TCONS_00016258 ID=TCONS_00016258|Name=TCONS_00016258|organism=Clytia hemisphaerica|type=CDS|length=42498bp|location=Sequence derived from alignment at sc0000232:324372..335396+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016258 vs. Swiss-Prot (Human)
Match: NOP2 (Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase OS=Homo sapiens GN=NOP2 PE=1 SV=2) HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0 Identity = 269/380 (70.79%), Postives = 324/380 (85.26%), Query Frame = 3
Query: 816 EVFVLPSGQEIEKEGIDPPDLSMVHQRIKDNLHALSDFKKNRQEGRSRHEYLQVLVKDLMKYYSYNEYFMEYLVNLFPGGEILEFLEACEVRRPITIRSNSLKTRRRDLAQSLINRGVNLDPIGKWSKVGLVVYDSSVPIGATPEYLSGHYMLQGASSMLPVMALAPQEHEKIMDMCAAPGGKTTYIGALMKNTGMLVANDAKEERLKSLTANAHRMGINNLIVCNYDGRSFPKVMGGFDRILLDAPCSGTGVISKDEQVKINKSEKDIMRCSHIQKELILAAIDSVDAKSKTGGYVVYSTCSIMVEENEWVVDYALAQRNVKLVPTGIDFGKEGYTKYKDRRFHPSLNLTRRFYPHTQNMDGFFVAKFKKFANIIPKNQ 1955
E FVLP E+E++ PDL VH+RI+D + L DF R+EGRSR EYL L KDL YYSY ++ + L++LFP E++EFLEA EV RP+T+R+N+LKTRRRDLAQ+LINRGVNLDP+GKWSK GLVVYDSSVPIGATPEYL+GHYMLQGASSMLPVMALAPQEHE+I+DMC APGGKT+Y+ LMKNTG+++ANDA ERLKS+ N HR+G+ N I+ +YDGR FPKV+GGFDR+LLDAPCSGTGVISKD VK NK EKDI+RC+H+QKEL+L+AIDSV+A SKTGGY+VY TCSI VEENEWVVDYAL +RNV+LVPTG+DFG+EG+T++++RRFHPSL TRRFYPHT NMDGFF+AKFKKF+N IP++Q
Sbjct: 217 EPFVLPPAGEMEQDA-QAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQ 595 The following BLAST results are available for this feature:
BLAST of TCONS_00016258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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