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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00016258-protein ID=TCONS_00016258-protein|Name=TCONS_00016258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=786bp
MGRKSWGELKERKKGPGRKARKQEHPEENLPFHLLNEEQQKNILKKRKKD
KKKVKEEKIEKKIESKEENQIVDFTANKDVKPKKLTKWEKKKAKKLQAKK
ETTIFDSDSENDYDEEEDNEGDKETSESEEDEGIQDENKEWLKLKKDGGE
REEEEESEEEEDEESGEEEESDVEMPDDEFDMDEDEDESDDDEDEEGDEG
SGEEDELPFEKKAKKLKAAQKKKKELAEEELKTNIAQSEVFVLPSGQEIE
KEGIDPPDLSMVHQRIKDNLHALSDFKKNRQEGRSRHEYLQVLVKDLMKY
YSYNEYFMEYLVNLFPGGEILEFLEACEVRRPITIRSNSLKTRRRDLAQS
LINRGVNLDPIGKWSKVGLVVYDSSVPIGATPEYLSGHYMLQGASSMLPV
MALAPQEHEKIMDMCAAPGGKTTYIGALMKNTGMLVANDAKEERLKSLTA
NAHRMGINNLIVCNYDGRSFPKVMGGFDRILLDAPCSGTGVISKDEQVKI
NKSEKDIMRCSHIQKELILAAIDSVDAKSKTGGYVVYSTCSIMVEENEWV
VDYALAQRNVKLVPTGIDFGKEGYTKYKDRRFHPSLNLTRRFYPHTQNMD
GFFVAKFKKFANIIPKNQKPAEEEVEEVGAEETSENEDETEETSEQAEEM
ESEDVPEKKEDTPKQKEDTPKQKKTNKKRKNTDTKPKESTDEKSPKKKQK
KMPKKENSQNKTKKEKTVEKVDNNEADENTTESQDKNEETQSKEVDTQSK
EVSTQSPKTTKKTNKKKINKTKKSPNKKKKKPAAQT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
| GO:0003723 | RNA binding |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006364 | rRNA processing |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006364 |
rRNA processing |
| molecular_function |
GO:0008168 |
methyltransferase activity |
| molecular_function |
GO:0003723 |
RNA binding |
| molecular_function |
GO:0008757 |
S-adenosylmethionine-dependent methyltransferase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 49..69 |
| None | No IPR available | COILS | Coil | Coil | coord: 209..239 |
| None | No IPR available | COILS | Coil | Coil | coord: 150..170 |
| None | No IPR available | COILS | Coil | Coil | coord: 630..653 |
| None | No IPR available | GENE3D | 3.40.50.150 | | coord: 393..618
e-value: 2.0E-63
score: 213.2 |
| None | No IPR available | GENE3D | 3.30.70.1170 | | coord: 323..392
e-value: 3.1E-16
score: 58.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..58 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 91..211 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 618..786 |
| IPR023273 | RNA (C5-cytosine) methyltransferase, NOP2 | PRINTS | PR02012 | RCMTNOP2 | coord: 286..306
score: 44.32
coord: 319..331
score: 52.78
coord: 342..355
score: 80.6 |
| IPR023267 | RNA (C5-cytosine) methyltransferase | PRINTS | PR02008 | RCMTFAMILY | coord: 532..548
score: 58.56
coord: 478..490
score: 76.86
coord: 592..609
score: 41.58
coord: 412..422
score: 74.26
coord: 383..397
score: 32.07 |
| IPR031341 | Ribosomal RNA small subunit methyltransferase F, N-terminal | PFAM | PF17125 | Methyltr_RsmF_N | coord: 305..397
e-value: 4.9E-9
score: 36.5 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PFAM | PF01189 | Methyltr_RsmB-F | coord: 400..608
e-value: 1.4E-77
score: 259.7 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PROSITE | PS51686 | SAM_MT_RSMB_NOP | coord: 323..610
score: 72.934 |
| IPR011023 | Nop2p | TIGRFAM | TIGR00446 | TIGR00446 | coord: 335..609
e-value: 3.3E-104
score: 345.8 |
| IPR018314 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | PROSITE | PS01153 | NOL1_NOP2_SUN | coord: 477..488 |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 296..609 |
Blast
BLAST of TCONS_00016258-protein vs. Swiss-Prot (Human)
Match: NSUN6 (Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.993e-26 Identity = 89/272 (32.72%), Postives = 130/272 (47.79%), Query Frame = 0
Query: 377 PIGATPEY---LSGHYMLQGASSMLPVMALAPQEHEKIMDMCAAPGGKTTYIGALMKNTGMLVANDAKEERLKSLTANAHRMGINNLIVCNYDGRSF-------------PKVMGGFDRILLDAPCSGTGVISKDEQVKINKSEKDIMRCSHIQKELILAAIDSVDAKSKTGGYVVYSTCSIMVEENEWVVDYALAQR-NVKLVPTGIDFGKEGYTKY--------KDRRFHP-----------SLNLTRR---FYPHTQNMDGFFVAKFKK 609
P+ +P + L + LQ S L L PQ EKI+D+CAAPGGKTT+I ALM + G ++A D +++ + NA +G+N++ +DG P + FDRILLDAPCSG G + + S K++ +Q++L AA+ + K G +VYSTC+I + ENE V +AL + ++L P G EG + +RF P SL RR ++ GFF+AKF K
Sbjct: 201 PVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMG---QRPNMACTWSVKEVASYQPLQRKLFTAAVQLL----KPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465
The following BLAST results are available for this feature:
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