XLOC_025625 (gene) - C. hemisphaerica

Overview
NameXLOC_025625
Unique NameXLOC_025625
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002977:8972..14679+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_025625 ID=XLOC_025625|Name=XLOC_025625|organism=Clytia hemisphaerica|type=gene|length=5708bp|location=Sequence derived from alignment at sc0002977:8972..14679+ (Clytia hemisphaerica)
ATTGGGTGCAGACATACCAAATATAGTGACAAAAATTGTAATTAAGGGta
acaaataagtattttcgattttcgacctACGCGTGTATTttatttcgcga
ttttgtatttttgaaaaatttaaacggtattaaatttcgcgaaatttggc
ttaaaaaatcgcgaaattaagtacccgccaaatttaatacacgcgaaata
taataccaataaggtacacacaaaaaaacataaaatggcATTCGTGAAAT
TGTTACTGGGGGACAATCTACAGTTaagaatgctctaaaaatggcattct
taggttctgttgccgaattccatgatggtgatatccTTAAGCGTTTTTTT
GCGGACAATTTCAACATAGATATTCGTATAAAAAAGCAATAACACAACGC
ACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAGGTATT
TGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTCCAAGA
TGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATACGATG
CAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGGTTAGTATAAG
CCGTAATTTATTCGCCTTGAGACAATCAACAATAGCGCAGTAACACCAAA
ATAGCGCGCGCAGGTTaccttttttacaaatttttacaaagctctatttc
atACACCATGTGCTTTGACCACATGGTAACATGTATCTTTGATCTGAATA
TCTTTTGCATCATGCAATagtaattgaaatattttttagattCACACCAT
AACTCCTGGTTTAGCAGATGACTTTCCTCCACAAATTTCGGTTATTTAAT
TCTGGTCTGTAGATTAAGTTGTAACCCAATAAGTAACCCAATTGGGGTAC
CCCACCTTTTAGAAACACCCTATTTTTCCTCTTTGAACCTCAGTGGAACA
TCATGGCTGGGTCAATGGTGTAGCATTCTTTGGCTCGCGCAATTCGCCTG
CTTTTGAAAATACCGAAATAACctttcaaaattatttcttctATTTCGTA
GTATGCAGAATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCTTAGAC
CCCCTGAGATAAGATTGTTTAGACAGAGAATAGCAGAAACACTTCTATGG
ATTGGAGGttaaattttttacaatttttgattAATTAATTCTGTCCGATT
AACGAAGTTTACCTCATATTAGAGTTCGTTGAAATTTATATCCTttgacc
gaaaaaaaaaacatatccaCATCTATGgagaataaaaaataacaatatta
CATCCAGCTTCTTAATACTTTTAGGCAATGGAGATTGGTGCCAAAAGTTT
TGCCGTGTTTGCGGTGAATCCACCCCTCCAAAGAAAATTAGACCTAGAAC
AAAACCGAAATGGGTAAATATGATTTTATCTTAATTcaggaaaaaattga
aatagttTTAAAAATCACTTCTTTTTATAAGTTTCCAGGGGATACCGCAA
TCcgggacaaaaggttgtagacttttcaaaaatacatgaaaagtttcaaa
aaaagctctgaAACCCCATTTTTACCAGGgccaatgttgtttttattgga
tttgtaGAGTTGGGTGACAAGTCTAGAAGCCAAATCCACTCGACATTGAA
GGAAATGCATTTTTTAAAAGTCTTCAGGCCTTTTTTGTTGTCTGAGATTG
AAGATTGAAAGTTCAATGAGTCTCGCACTTCAACTTTTTCGAGAAGACAT
CTATAATTAGACCATATTCAAGATGGTTTAATCaattataaagaactttt
tagagCTCTCTGGTGCACCCACCACCCACCACCTGGGTGTGGCTGAAGTT
CACctattttcagtcattttcagtttttaaaagtCTAAAATTCACAATTA
CTAAAGCCACGAGGATTGCTAGCAAGCCCGTAGGTGTCCTCTGccaaata
atcacttgtggttcatTTGGGGAATTTCAgggctttttggacctaccccg
gtggggtagaggtcctataaattaaccgatgtccgtccgttcgtctgttc
gtccgttcgtctgtctgttaccagcttttctcaggaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtta
gttttttctgattttttgctcaaagatgcgtattaacaatgcccaaaaca
tggccgagtccgatttttgagaaaattttttttccggccgaaaatgccgg
aaatatgcctgaaatcgccgtttttctggattttcattggacttctTCCA
tataattgtttgttttttctttcaaaaacattattaatagcaatgcccac
catcaagcatgtttcaattttcaataaaattgatttttgaagccggaact
ttctaaaaatcgccggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aaatgtcaatacctaaattgtgacggagcccgattttcgaaaagaattta
tttccggccgaaaatgccggaaatatgccggaaaaactgttttttgggca
ttttctcgagattttatcattagttttttctgattttttgcagaaagatg
cgtattcgcaatgctcaaaaaatggccgagttcgatttttgaggaaaaat
ttttttccagttgaaaatgctggaaatcgccgttttgcagattttcattg
gattttttccttatatttatatgtttttcacacaaaaagattattgataa
caatgctcaccatcaagcatgattcaattgtcaataaaactgatttttgc
aaccagaacttcctatttattttttccctacaacccttccctctccccat
caacaatcaatgatgaatttattgtgatGTGTATTTTCGgtaacgctata
ttttctgactgatttttttcatttttcttttcgcattgctatctaacttt
catcatcaggtaggtccattcagcatgttgcTTGTTTTTGCACTATtaac
taatttttgaaaagtctacagaccttttgtccatgattgcagGTTTGTCG
AAACAGGTCGAAAAACACACCCTCGCGAAAACAATATAACCTTATCAAat
ccttttttcttttaatacgAGTTTTCGCATTTTTTTAGGATAACATTGTA
TACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATGACTGA
AGGTTGACGGTATTACCAATTTTGCATCACGGTGGTCTGCAGAAATTCGA
TTGCACGTGCCTCAATGTTATTGTTATTaacattcaaaaattcaaaagag
gAGAGCACTTTAtcctaaaattgtaaaatatcaAAAGCAAAAATGTCCCT
AGATCACTCTCTTATTTTTGAAATGACATATCGTTGACTCTTTTTAACGT
TTGACGAGTTTGGTCGAATGTCAAATTAACCTTTAttaaaatagaacaga
tttagcCTATCTGCCAAGTTTACAAATTCTATTTATTCACCAAAGCAGCT
CGTTCTTACCGAAACTAAAATTTTCATGAATTCATCCTATATATCTTGCA
AAACTCAACATGTACGGGCAAAGCTATTAACAATATTAAATTAAATGTAT
TAAAAAAGGAACAGACCCAACGAACANtttgttttgaaagaatgatggtt
atacttaaaaatgagcatgtttttactggtttgagacagattcaaaataa
catatttgcgtctaaaggaaatattttatcaccaaaattagataaaaatt
gcatataactcactctagctccttggatattgaaaataagttatgaaaac
ggggtataggaaactttctacacctcatgccgttcagaaaatgcaaatac
atctgtgactttagaggctgggtaaaagatatagcatcttgaaggtcaac
cagtattttggagccctagaatcaatATTGACAAAACccaaaattctaaa
tatgagaaaaagcaaaaaatcttggaattctattcctatcaccctgagtt
aatagtttataacaaaaaattaacattatatataaaaaatttcgcttaat
cagcaaaaacggcaaattctgtcatttttttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaaact
tgattaagacgttgttaaatcaaaattgtcattttgaaaatttctaaatt
ttcagtttggactttgcaatatcgaaaatcttgaaatatttcttaaaaat
cataaattttacatccatcgggtcgcaAATTTAAGGGAagacacaaatat
gttcatagtttttccccctattaccactgggcttaataatttgatttaag
ctacacctccgttttgggggccccaaacctgcattttgacaaccaggagt
atactgtaaaaattttatcaaataaatttatgcccaaaaccctctaaatc
atatttcaaaactatgatcaaaattttgtattcatatcttaagtNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaaaattttgaaaaagaacttccaggaaataaagtaga
gatgttaaagtttttcatgcagcaaaaatttttgtaaaacctcttttcct
ctagatttgagagtaatttcaaatttgatcgccgttttgggggccacata
ctgtatataTCTTGCAAAACTCAACATGTACGGGCAAAGCTATTAACAAT
ATTAAATTAAATGTATTAAACAAGGAACAGACCCAACGAACATCAAACAC
AAACAAACTGAAATttacattagaaaaatataaaagcttGAAAcattatg
tatttttttattcaaggtACAATGCGACCTTTGTATTCCACCAGCTTGGT
ACCACAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00041701TCONS_00041701Clytia hemisphaericatranscript
TCONS_00041702TCONS_00041702Clytia hemisphaericatranscript
TCONS_00041703TCONS_00041703Clytia hemisphaericatranscript
TCONS_00041704TCONS_00041704Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002977supercontigsc0002977:8972..14679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13	0.12	0.33	0.32	2.78	2.08	1.65	2.65	7.78	7.01	4.2	5.99	1.73	2.01	1.94	1.49	2.29	1.88	0.9	0.88	1.2	1.75	1.09	1.77	1.26	1.11	1.07	1.09	2.01	1.29