TCONS_00041704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041704
Unique NameTCONS_00041704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041704 ID=TCONS_00041704|Name=TCONS_00041704|organism=Clytia hemisphaerica|type=transcript|length=502bp
AACGCACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAG
GTATTTGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTC
CAAGATGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATA
CGATGCAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGTATGCA
GAATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCTTAGACCCCCTGA
GATAAGATTGTTTAGACAGAGAATAGCAGAAACACTTCTATGGATTGGAG
GCAATGGAGATTGGTGCCAAAAGTTTTGCCGTGTTTGCGGTGAATCCACC
CCTCCAAAGAAAATTAGACCTAGAACAAAACCGAAATGGGATAACATTGT
ATACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATGACTG
AAGGTTGACGgtACAATGCGACCTTTGTATTCCACCAGCTTGGTACCACA
AT
Run BLAST on NCBI

transcript from alignment at sc0002977:9367..14679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041704 ID=TCONS_00041704|Name=TCONS_00041704|organism=Clytia hemisphaerica|type=transcript|length=5313bp|location=Sequence derived from alignment at sc0002977:9367..14679+ (Clytia hemisphaerica)
AACGCACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAG
GTATTTGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTC
CAAGATGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATA
CGATGCAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGGTTAGT
ATAAGCCGTAATTTATTCGCCTTGAGACAATCAACAATAGCGCAGTAACA
CCAAAATAGCGCGCGCAGGTTaccttttttacaaatttttacaaagctct
atttcatACACCATGTGCTTTGACCACATGGTAACATGTATCTTTGATCT
GAATATCTTTTGCATCATGCAATagtaattgaaatattttttagattCAC
ACCATAACTCCTGGTTTAGCAGATGACTTTCCTCCACAAATTTCGGTTAT
TTAATTCTGGTCTGTAGATTAAGTTGTAACCCAATAAGTAACCCAATTGG
GGTACCCCACCTTTTAGAAACACCCTATTTTTCCTCTTTGAACCTCAGTG
GAACATCATGGCTGGGTCAATGGTGTAGCATTCTTTGGCTCGCGCAATTC
GCCTGCTTTTGAAAATACCGAAATAACctttcaaaattatttcttctATT
TCGTAGTATGCAGAATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCT
TAGACCCCCTGAGATAAGATTGTTTAGACAGAGAATAGCAGAAACACTTC
TATGGATTGGAGGttaaattttttacaatttttgattAATTAATTCTGTC
CGATTAACGAAGTTTACCTCATATTAGAGTTCGTTGAAATTTATATCCTt
tgaccgaaaaaaaaaacatatccaCATCTATGgagaataaaaaataacaa
tattaCATCCAGCTTCTTAATACTTTTAGGCAATGGAGATTGGTGCCAAA
AGTTTTGCCGTGTTTGCGGTGAATCCACCCCTCCAAAGAAAATTAGACCT
AGAACAAAACCGAAATGGGTAAATATGATTTTATCTTAATTcaggaaaaa
attgaaatagttTTAAAAATCACTTCTTTTTATAAGTTTCCAGGGGATAC
CGCAATCcgggacaaaaggttgtagacttttcaaaaatacatgaaaagtt
tcaaaaaaagctctgaAACCCCATTTTTACCAGGgccaatgttgttttta
ttggatttgtaGAGTTGGGTGACAAGTCTAGAAGCCAAATCCACTCGACA
TTGAAGGAAATGCATTTTTTAAAAGTCTTCAGGCCTTTTTTGTTGTCTGA
GATTGAAGATTGAAAGTTCAATGAGTCTCGCACTTCAACTTTTTCGAGAA
GACATCTATAATTAGACCATATTCAAGATGGTTTAATCaattataaagaa
ctttttagagCTCTCTGGTGCACCCACCACCCACCACCTGGGTGTGGCTG
AAGTTCACctattttcagtcattttcagtttttaaaagtCTAAAATTCAC
AATTACTAAAGCCACGAGGATTGCTAGCAAGCCCGTAGGTGTCCTCTGcc
aaataatcacttgtggttcatTTGGGGAATTTCAgggctttttggaccta
ccccggtggggtagaggtcctataaattaaccgatgtccgtccgttcgtc
tgttcgtccgttcgtctgtctgttaccagcttttctcaggaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNttagttttttctgattttttgctcaaagatgcgtattaacaatgccca
aaacatggccgagtccgatttttgagaaaattttttttccggccgaaaat
gccggaaatatgcctgaaatcgccgtttttctggattttcattggacttc
tTCCAtataattgtttgttttttctttcaaaaacattattaatagcaatg
cccaccatcaagcatgtttcaattttcaataaaattgatttttgaagccg
gaactttctaaaaatcgccggNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaaatgtcaatacctaaattgtgacggagcccgattttcgaaaaga
atttatttccggccgaaaatgccggaaatatgccggaaaaactgtttttt
gggcattttctcgagattttatcattagttttttctgattttttgcagaa
agatgcgtattcgcaatgctcaaaaaatggccgagttcgatttttgagga
aaaatttttttccagttgaaaatgctggaaatcgccgttttgcagatttt
cattggattttttccttatatttatatgtttttcacacaaaaagattatt
gataacaatgctcaccatcaagcatgattcaattgtcaataaaactgatt
tttgcaaccagaacttcctatttattttttccctacaacccttccctctc
cccatcaacaatcaatgatgaatttattgtgatGTGTATTTTCGgtaacg
ctatattttctgactgatttttttcatttttcttttcgcattgctatcta
actttcatcatcaggtaggtccattcagcatgttgcTTGTTTTTGCACTA
TtaactaatttttgaaaagtctacagaccttttgtccatgattgcagGTT
TGTCGAAACAGGTCGAAAAACACACCCTCGCGAAAACAATATAACCTTAT
CAAatccttttttcttttaatacgAGTTTTCGCATTTTTTTAGGATAACA
TTGTATACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATG
ACTGAAGGTTGACGGTATTACCAATTTTGCATCACGGTGGTCTGCAGAAA
TTCGATTGCACGTGCCTCAATGTTATTGTTATTaacattcaaaaattcaa
aagaggAGAGCACTTTAtcctaaaattgtaaaatatcaAAAGCAAAAATG
TCCCTAGATCACTCTCTTATTTTTGAAATGACATATCGTTGACTCTTTTT
AACGTTTGACGAGTTTGGTCGAATGTCAAATTAACCTTTAttaaaataga
acagatttagcCTATCTGCCAAGTTTACAAATTCTATTTATTCACCAAAG
CAGCTCGTTCTTACCGAAACTAAAATTTTCATGAATTCATCCTATATATC
TTGCAAAACTCAACATGTACGGGCAAAGCTATTAACAATATTAAATTAAA
TGTATTAAAAAAGGAACAGACCCAACGAACANtttgttttgaaagaatga
tggttatacttaaaaatgagcatgtttttactggtttgagacagattcaa
aataacatatttgcgtctaaaggaaatattttatcaccaaaattagataa
aaattgcatataactcactctagctccttggatattgaaaataagttatg
aaaacggggtataggaaactttctacacctcatgccgttcagaaaatgca
aatacatctgtgactttagaggctgggtaaaagatatagcatcttgaagg
tcaaccagtattttggagccctagaatcaatATTGACAAAACccaaaatt
ctaaatatgagaaaaagcaaaaaatcttggaattctattcctatcaccct
gagttaatagtttataacaaaaaattaacattatatataaaaaatttcgc
ttaatcagcaaaaacggcaaattctgtcatttttttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaa
aaacttgattaagacgttgttaaatcaaaattgtcattttgaaaatttct
aaattttcagtttggactttgcaatatcgaaaatcttgaaatatttctta
aaaatcataaattttacatccatcgggtcgcaAATTTAAGGGAagacaca
aatatgttcatagtttttccccctattaccactgggcttaataatttgat
ttaagctacacctccgttttgggggccccaaacctgcattttgacaacca
ggagtatactgtaaaaattttatcaaataaatttatgcccaaaaccctct
aaatcatatttcaaaactatgatcaaaattttgtattcatatcttaagtN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNaaaattttgaaaaagaacttccaggaaataaa
gtagagatgttaaagtttttcatgcagcaaaaatttttgtaaaacctctt
ttcctctagatttgagagtaatttcaaatttgatcgccgttttgggggcc
acatactgtatataTCTTGCAAAACTCAACATGTACGGGCAAAGCTATTA
ACAATATTAAATTAAATGTATTAAACAAGGAACAGACCCAACGAACATCA
AACACAAACAAACTGAAATttacattagaaaaatataaaagcttGAAAca
ttatgtatttttttattcaaggtACAATGCGACCTTTGTATTCCACCAGC
TTGGTACCACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025625XLOC_025625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041704-exon-sc0002977-1491911889:9367..9560TCONS_00041704-exon-sc0002977-1491911889:9367..9560Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1510915933:9367..9560TCONS_00041704-exon-sc0002977-1510915933:9367..9560Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1575043694:9367..9560TCONS_00041704-exon-sc0002977-1575043694:9367..9560Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1491911889:10023..10128TCONS_00041704-exon-sc0002977-1491911889:10023..10128Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1510915933:10023..10128TCONS_00041704-exon-sc0002977-1510915933:10023..10128Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1575043694:10023..10128TCONS_00041704-exon-sc0002977-1575043694:10023..10128Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1491911889:10296..10384TCONS_00041704-exon-sc0002977-1491911889:10296..10384Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1510915933:10296..10384TCONS_00041704-exon-sc0002977-1510915933:10296..10384Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1575043694:10296..10384TCONS_00041704-exon-sc0002977-1575043694:10296..10384Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1491911889:12560..12630TCONS_00041704-exon-sc0002977-1491911889:12560..12630Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1510915933:12560..12630TCONS_00041704-exon-sc0002977-1510915933:12560..12630Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1575043694:12560..12630TCONS_00041704-exon-sc0002977-1575043694:12560..12630Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1491911889:14638..14679TCONS_00041704-exon-sc0002977-1491911889:14638..14679Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1510915933:14638..14679TCONS_00041704-exon-sc0002977-1510915933:14638..14679Clytia hemisphaericaexon
TCONS_00041704-exon-sc0002977-1575043694:14638..14679TCONS_00041704-exon-sc0002977-1575043694:14638..14679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002977supercontigsc0002977:9367..14679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0112974	0	0	1.29914	1.77531	0.772999	1.10869	3.27698	3.00364	3.2705	3.28	0.931154	0.849034	1.4962	0.826563	1.5784	1.2359	0.275056	0.0633297	0.0682626	0.393116	0.793547	1.30104	0.909357	0.728958	0	0	0.555289	0.726989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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