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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041701 ID=TCONS_00041701|Name=TCONS_00041701|organism=Clytia hemisphaerica|type=transcript|length=1144bp
ATTGGGTGCAGACATACCAAATATAGTGACAAAAATTGTAATTAAGGGta
acaaataagtattttcgattttcgacctACGCGTGTATTttatttcgcga
ttttgtatttttgaaaaatttaaacggtattaaatttcgcgaaatttggc
ttaaaaaatcgcgaaattaagtacccgccaaatttaatacacgcgaaata
taataccaataaggtacacacaaaaaaacataaaatggcATTCGTGAAAT
TGTTACTGGGGGACAATCTACAGTTaagaatgctctaaaaatggcattct
taggttctgttgccgaattccatgatggtgatatccTTAAGCGTTTTTTT
GCGGACAATTTCAACATAGATATTCGTATAAAAAAGCAATAACACAACGC
ACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAGGTATT
TGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTCCAAGA
TGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATACGATG
CAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGTATGCAGAATT
GATCATTACTGCTGGTGAAGTTCCTGAAATCCTTAGACCCCCTGAGATAA
GATTGTTTAGACAGAGAATAGCAGAAACACTTCTATGGATTGGAGGCAAT
GGAGATTGGTGCCAAAAGTTTTGCCGTGTTTGCGGTGAATCCACCCCTCC
AAAGAAAATTAGACCTAGAACAAAACCGAAATGGGATAACATTGTATACG
TGACTTTATGACTGAGACAATTGACAAATATTAACGACATGACTGAAGGT
TGACGGTATTACCAATTTTGCATCACGGTGGTCTGCAGAAATTCGATTGC
ACGTGCCTCAATGTTATTGTTATTaacattcaaaaattcaaaagaggAGA
GCACTTTAtcctaaaattgtaaaatatcaAAAGCAAAAATGTCCCTAGAT
CACTCTCTTATTTTTGAAATGACATATCGTTGACTCTTTTTAACGTTTGA
CGAGTTTGGTCGAATGTCAAATTAACCTTTAttaaaatagaacagattta
gcCTATCTGCCAAGTTTACAAATTCTATTTATTCACCAAAGCAG Run BLAST on NCBI transcript from alignment at sc0002977:8972..12919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041701 ID=TCONS_00041701|Name=TCONS_00041701|organism=Clytia hemisphaerica|type=transcript|length=3948bp|location=Sequence derived from alignment at sc0002977:8972..12919+ (Clytia hemisphaerica)
ATTGGGTGCAGACATACCAAATATAGTGACAAAAATTGTAATTAAGGGta
acaaataagtattttcgattttcgacctACGCGTGTATTttatttcgcga
ttttgtatttttgaaaaatttaaacggtattaaatttcgcgaaatttggc
ttaaaaaatcgcgaaattaagtacccgccaaatttaatacacgcgaaata
taataccaataaggtacacacaaaaaaacataaaatggcATTCGTGAAAT
TGTTACTGGGGGACAATCTACAGTTaagaatgctctaaaaatggcattct
taggttctgttgccgaattccatgatggtgatatccTTAAGCGTTTTTTT
GCGGACAATTTCAACATAGATATTCGTATAAAAAAGCAATAACACAACGC
ACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAGGTATT
TGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTCCAAGA
TGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATACGATG
CAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGGTTAGTATAAG
CCGTAATTTATTCGCCTTGAGACAATCAACAATAGCGCAGTAACACCAAA
ATAGCGCGCGCAGGTTaccttttttacaaatttttacaaagctctatttc
atACACCATGTGCTTTGACCACATGGTAACATGTATCTTTGATCTGAATA
TCTTTTGCATCATGCAATagtaattgaaatattttttagattCACACCAT
AACTCCTGGTTTAGCAGATGACTTTCCTCCACAAATTTCGGTTATTTAAT
TCTGGTCTGTAGATTAAGTTGTAACCCAATAAGTAACCCAATTGGGGTAC
CCCACCTTTTAGAAACACCCTATTTTTCCTCTTTGAACCTCAGTGGAACA
TCATGGCTGGGTCAATGGTGTAGCATTCTTTGGCTCGCGCAATTCGCCTG
CTTTTGAAAATACCGAAATAACctttcaaaattatttcttctATTTCGTA
GTATGCAGAATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCTTAGAC
CCCCTGAGATAAGATTGTTTAGACAGAGAATAGCAGAAACACTTCTATGG
ATTGGAGGttaaattttttacaatttttgattAATTAATTCTGTCCGATT
AACGAAGTTTACCTCATATTAGAGTTCGTTGAAATTTATATCCTttgacc
gaaaaaaaaaacatatccaCATCTATGgagaataaaaaataacaatatta
CATCCAGCTTCTTAATACTTTTAGGCAATGGAGATTGGTGCCAAAAGTTT
TGCCGTGTTTGCGGTGAATCCACCCCTCCAAAGAAAATTAGACCTAGAAC
AAAACCGAAATGGGTAAATATGATTTTATCTTAATTcaggaaaaaattga
aatagttTTAAAAATCACTTCTTTTTATAAGTTTCCAGGGGATACCGCAA
TCcgggacaaaaggttgtagacttttcaaaaatacatgaaaagtttcaaa
aaaagctctgaAACCCCATTTTTACCAGGgccaatgttgtttttattgga
tttgtaGAGTTGGGTGACAAGTCTAGAAGCCAAATCCACTCGACATTGAA
GGAAATGCATTTTTTAAAAGTCTTCAGGCCTTTTTTGTTGTCTGAGATTG
AAGATTGAAAGTTCAATGAGTCTCGCACTTCAACTTTTTCGAGAAGACAT
CTATAATTAGACCATATTCAAGATGGTTTAATCaattataaagaactttt
tagagCTCTCTGGTGCACCCACCACCCACCACCTGGGTGTGGCTGAAGTT
CACctattttcagtcattttcagtttttaaaagtCTAAAATTCACAATTA
CTAAAGCCACGAGGATTGCTAGCAAGCCCGTAGGTGTCCTCTGccaaata
atcacttgtggttcatTTGGGGAATTTCAgggctttttggacctaccccg
gtggggtagaggtcctataaattaaccgatgtccgtccgttcgtctgttc
gtccgttcgtctgtctgttaccagcttttctcaggaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtta
gttttttctgattttttgctcaaagatgcgtattaacaatgcccaaaaca
tggccgagtccgatttttgagaaaattttttttccggccgaaaatgccgg
aaatatgcctgaaatcgccgtttttctggattttcattggacttctTCCA
tataattgtttgttttttctttcaaaaacattattaatagcaatgcccac
catcaagcatgtttcaattttcaataaaattgatttttgaagccggaact
ttctaaaaatcgccggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aaatgtcaatacctaaattgtgacggagcccgattttcgaaaagaattta
tttccggccgaaaatgccggaaatatgccggaaaaactgttttttgggca
ttttctcgagattttatcattagttttttctgattttttgcagaaagatg
cgtattcgcaatgctcaaaaaatggccgagttcgatttttgaggaaaaat
ttttttccagttgaaaatgctggaaatcgccgttttgcagattttcattg
gattttttccttatatttatatgtttttcacacaaaaagattattgataa
caatgctcaccatcaagcatgattcaattgtcaataaaactgatttttgc
aaccagaacttcctatttattttttccctacaacccttccctctccccat
caacaatcaatgatgaatttattgtgatGTGTATTTTCGgtaacgctata
ttttctgactgatttttttcatttttcttttcgcattgctatctaacttt
catcatcaggtaggtccattcagcatgttgcTTGTTTTTGCACTATtaac
taatttttgaaaagtctacagaccttttgtccatgattgcagGTTTGTCG
AAACAGGTCGAAAAACACACCCTCGCGAAAACAATATAACCTTATCAAat
ccttttttcttttaatacgAGTTTTCGCATTTTTTTAGGATAACATTGTA
TACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATGACTGA
AGGTTGACGGTATTACCAATTTTGCATCACGGTGGTCTGCAGAAATTCGA
TTGCACGTGCCTCAATGTTATTGTTATTaacattcaaaaattcaaaagag
gAGAGCACTTTAtcctaaaattgtaaaatatcaAAAGCAAAAATGTCCCT
AGATCACTCTCTTATTTTTGAAATGACATATCGTTGACTCTTTTTAACGT
TTGACGAGTTTGGTCGAATGTCAAATTAACCTTTAttaaaatagaacaga
tttagcCTATCTGCCAAGTTTACAAATTCTATTTATTCACCAAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041701-exon-sc0002977-1491911889:8972..9560 | TCONS_00041701-exon-sc0002977-1491911889:8972..9560 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1510915933:8972..9560 | TCONS_00041701-exon-sc0002977-1510915933:8972..9560 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1575043694:8972..9560 | TCONS_00041701-exon-sc0002977-1575043694:8972..9560 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1491911889:10023..10128 | TCONS_00041701-exon-sc0002977-1491911889:10023..10128 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1510915933:10023..10128 | TCONS_00041701-exon-sc0002977-1510915933:10023..10128 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1575043694:10023..10128 | TCONS_00041701-exon-sc0002977-1575043694:10023..10128 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1491911889:10296..10384 | TCONS_00041701-exon-sc0002977-1491911889:10296..10384 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1510915933:10296..10384 | TCONS_00041701-exon-sc0002977-1510915933:10296..10384 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1575043694:10296..10384 | TCONS_00041701-exon-sc0002977-1575043694:10296..10384 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1491911889:12560..12919 | TCONS_00041701-exon-sc0002977-1491911889:12560..12919 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1510915933:12560..12919 | TCONS_00041701-exon-sc0002977-1510915933:12560..12919 | Clytia hemisphaerica | exon |
| TCONS_00041701-exon-sc0002977-1575043694:12560..12919 | TCONS_00041701-exon-sc0002977-1575043694:12560..12919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002977 | supercontig | sc0002977:8972..12919 + |
Blast
The following BLAST results are available for this feature:
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