TCONS_00014419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014419
Unique NameTCONS_00014419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014419 ID=TCONS_00014419|Name=TCONS_00014419|organism=Clytia hemisphaerica|type=transcript|length=3722bp
CGGTTGGTTATAAATTAGTCATCGATTGACATTGAGTCTGGAAAATGACA
ATTAGACACATCGATCGCACCTACCTAGTTAACACAAGACTGatttaaca
gaaaaaaacaacaacaacatgaaTGCTAAAGGAGAGCAATCTACaagaaa
aaagaacaacaaaaagTCTAATGATGAGAATACTAATGCACAAAGCAAGG
CAAAGAAGCATCATCCCCAAAAGAAAGACCAACAGAAGGACAGAGGTAAA
CCTAAgcaaaataatgaagaaaaagataCCATCAAGAATGAGTCAACATC
TcctaaaaagaaacaccattcTAATAAAAAGTTACCTGAGATGAACTTTG
CTCCATACTTGTCAAAGGAAGAATGTTCTCAAAAACTGAAGCGTGGGGAA
TTGATTAAAGGTACTCTACGAATTAATCCAAGAAATTTCGTAGATGCTTT
TATAAGCTCAACAGATAGCAGTGAAAGAGATATTTATATTGAGGGTGTCG
CAGCAAGAAACAGGTCACTGCCTGGTGATATTGTGGCTGTCCAGCTTAAC
CCAAAAGAAGAATGGAAAACAAACCGTCCTGGTGAACCAGACGAGAAATC
TGATAAGGATGTTGTCACCAAAACTGGCAAAGTTGTTTACATTTTGGAAG
AGAAACATCCTCGAGTGGCGTGTGGTTTTCTGAAACCATTTTGCCATAAT
CAATTTGGCTTCGCTTTACTTTCGCCCAATGACAATCGTTTACCAAGATT
GATGATCCCATTGACAGAATGCCCTGatgattttaaaaatcaattttcaa
actatGTAAAGACATTGTTTATtgccaaaattgtaaaatgggAGAAGAAT
AAAGCTTTTGCAGGTGGAAAGATCATGCGAAGTCTTGGAGAAGCTGGCCA
TATTGAGCCAGAGACAGAATCAATATTACTTTGCAATGATATTGACAGCT
CaccattttcagaaaaagttttgCGTTGTTTGCCAGATGGTAAGACATGG
AAAGTGACTTCTGCTGAACTGTCTAAACGTCGAGATATGAGAAAAGAATG
TGTTTTTACTATTGATCCTGCAACTGCCCGTGATTTGGACGATGCTTTAT
CATGTAAAAAAATAGCTGATGGGTTGTATGAGGTTGGTGTGCATATTGCT
GATGTCAGCTATTTTATTGAGCAGAATACAGCCCTTGATGATGTAGCTAG
TCAACGAGCTACCAGCGTTTATTTGGCTCAGAAAGTTATTCCAATGTTAC
CCAATATTCTATGTGAGCAGTTGTGCAGTTTGAATCCTGGCGTGGAGAGA
CTAGCTTATTCTGTATTCTGGAACATGAAATCTGATGGGACTATCATGAG
TGAATCTTTTGGCCGTACCGTTATTAGTTCTTGTGTCAAATTGTCTTATG
ACCATGCACAGAGAATGATTGAAACTGATGATGTAAATGACCTGGTTATT
GATGAATTTCCTCCGATCACTGGTGACTTTTCAATGTTAACTATCCTAAA
TACAGTCAAAAACTTATTTGGGATGTCCAAACATCTTCGCCAGAAACGTT
TTGACAGTGGTGCCTTGAGGTTGGATCAGCCTAAACTCTCTTTTACCTTA
GATAGCCAGTCTGGGATGCCAAATGGTTGTGCTGTGTATCAATACAAAGA
TAGTAATCGAATGATCGAAGAATTCATGTTGTTAGCTAACATGGCTGTTG
GTCGAAAGATTTACAAGCATCATCCAAACCGTGCTGTTCTTCGAAATCAT
GCACCACCACAGGAAGTTATGATGGAAGAGGTTGCTGAGACTTGTAAAAA
GTTTGGTATCCCATTCGACATCTCGAACAGCTCTACTATTAGTGCTTCTC
TCAAATCGATTTTGGCCAGGGAGGATAGTGGATTTAACAAGGAGACTTTG
TTTACAGCTTTGACGATGCTTTGCACCAAGCCATTCCAAAAtgcgaaata
tttttgtacCGGCACAATTGAGAATGAATCAGCTTATCGTCATTATGCCT
TGAATGTTCCCATTTATACTCACTTTACATCACCGATTCGTCGTTACCCA
GATGTGATGGTCCACCGTCTTCTAACAGCATCACTTGACAAATCATTCGT
AGTGGAAGCAGATGTTGATCAACTCCAAACGCAATCTGATCACTGCAACG
ACAAAAAGTGGGCTGCCAAGAAAGCTTCAGAGCAAAGTTCATTGCTTTTC
TTTGCTGTTTACTTGTTAGAATGTGGACCGTTGATGGAGAAAGGTGTTGT
TGTCGGTGTCCTTGATAAAGCTGTAGACGTTTTGTGTACAAGAGTCGGTA
ACGTTGTCAGAGCTTACATGGATAAGTTACCATTAATCAAGTATCAATTC
ACCACCTCTGATGGAAAACCTAAGTTGGCCTTGTATTGGTTTCCTGAAGA
TTTGGATAGTAGTGAAAAGCCAAAAAATATCAATGAGGAAATCGCCAAAT
TGACAGAACGATTCGAAAAGAAATGGGAGGCACAGAAGGAGCAATCTGAT
GCGATACCAGAGGATGCTTTGAAACAAGAATTATGCTTGTTTTCTGAAGT
CAATATCCTATTGAAAGTTGAACGTGATTTACCAACAAAAATTTTAGGCA
TTCTTGCTcatccaaaaaatgaaaatacaccgTTACttgaattttaatat
tttatcattttaattattatttttaacaaATTCTTTTATCCTTTTACCAC
TGATGACACTTAGTAGAAcagtttcaaaaattgtgtgacattTTTTAGAA
cacaaaaaatggacaaaaatctttaaagttgAATAAAATCTACTCAAATC
AATTACaagtcttgaaattttgacaggaaataggaaattttatcaggttt
tcaaaaatatatttatgaaGTCATTCTTTGTGACAATAAATGACTTACTA
AATGAATTACCCTGTTAAGTTCAAAGTATGTCAATCTCTGTCACAATCAA
CTTTTGAATATAATTTAAACATAAATCCATGTTTTCATACCTTCTATATC
ATCCAGTAGTTAAATATGAACAACTTTCAGTGTTGATTATGCCAATAAAC
GACTTACTTTATGGGTAAAAAGCTGAAATATGTCATCCTTAAAGTAAGTC
ATTTTTGTCACACTTCACCTTCTGGGTATAACTTGAGATATAGTAAGTCA
ATTTAGGTAAAAAATAATGCATTATTTAGGGGATATATCTGGCTTAACCA
TATCAAAAAATATAGACATTATGCACAATGTGCTCTGTCTCTATGAGACA
GTTTTGTGTGAGCCTTCAAAAATTTCACACACCCAGTACTGAATTTTTGA
AACTGTTCAGTATGGGTGTTCTCTTTTATCATATATGGTGGTTGTAATCG
CAGGTTGTTACTGACATTCAGACTCGAGATAAACACAAGTTTTCTGTGCT
GAGCAACACCAAAGGCGAAGGTGTCCTTTTTTTAATAGCCTTTGTTCTTG
CCtctaattatgcttctgttttcTCAAATTTGGTGCAAAGGgagattttg
tttaaaaaaaccgTAAGGTATTTTTTGACAAGTTTTAGTATATTCTAATT
ATTGAGCGTATAATATTGTTACGAATTTTAAGTGTATTTTGTTTATTTCG
TTCAATGGTACACAAGTTTTCAAGTTGAtagaaagaaaatctaaaatact
tGCGTTTTCAAAGTACTTCCTGTCCTGCACCTTTTATACTCTTGTTTTAA
TGATAATGATaaagatttttgg
Run BLAST on NCBI

protein sequence of TCONS_00014419-protein

>TCONS_00014419-protein ID=TCONS_00014419-protein|Name=TCONS_00014419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp
MNAKGEQSTRKKNNKKSNDENTNAQSKAKKHHPQKKDQQKDRGKPKQNNE
EKDTIKNESTSPKKKHHSNKKLPEMNFAPYLSKEECSQKLKRGELIKGTL
RINPRNFVDAFISSTDSSERDIYIEGVAARNRSLPGDIVAVQLNPKEEWK
TNRPGEPDEKSDKDVVTKTGKVVYILEEKHPRVACGFLKPFCHNQFGFAL
LSPNDNRLPRLMIPLTECPDDFKNQFSNYVKTLFIAKIVKWEKNKAFAGG
KIMRSLGEAGHIEPETESILLCNDIDSSPFSEKVLRCLPDGKTWKVTSAE
LSKRRDMRKECVFTIDPATARDLDDALSCKKIADGLYEVGVHIADVSYFI
EQNTALDDVASQRATSVYLAQKVIPMLPNILCEQLCSLNPGVERLAYSVF
WNMKSDGTIMSESFGRTVISSCVKLSYDHAQRMIETDDVNDLVIDEFPPI
TGDFSMLTILNTVKNLFGMSKHLRQKRFDSGALRLDQPKLSFTLDSQSGM
PNGCAVYQYKDSNRMIEEFMLLANMAVGRKIYKHHPNRAVLRNHAPPQEV
MMEEVAETCKKFGIPFDISNSSTISASLKSILAREDSGFNKETLFTALTM
LCTKPFQNAKYFCTGTIENESAYRHYALNVPIYTHFTSPIRRYPDVMVHR
LLTASLDKSFVVEADVDQLQTQSDHCNDKKWAAKKASEQSSLLFFAVYLL
ECGPLMEKGVVVGVLDKAVDVLCTRVGNVVRAYMDKLPLIKYQFTTSDGK
PKLALYWFPEDLDSSEKPKNINEEIAKLTERFEKKWEAQKEQSDAIPEDA
LKQELCLFSEVNILLKVERDLPTKILGILAHPKNENTPLLEF
Run BLAST on NCBI

transcript from alignment at sc0000187:140906..146123-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014419 ID=TCONS_00014419|Name=TCONS_00014419|organism=Clytia hemisphaerica|type=transcript|length=5218bp|location=Sequence derived from alignment at sc0000187:140906..146123- (Clytia hemisphaerica)
CGGTTGGTTATAAATTAGTCATCGATTGACATTGAGTCTGGAAAATGACA
ATTAGACACATCGATCGCACCTACCTAGTTAACACAAGGTAACTTCTATC
ACTTTATATAGATTGACACCCCCTGCTATGACTTCTTCTGTGAAATACTA
AGTAAATGATAATCTTTCTTACAACACAACCTAAGCAAATATCAACAAAT
AATTCTACCTGTAAAAATGAAGATCATACCTGTCTGTTGTGTGTGTTGTC
TGTATTGTTGTTGTGTGAAGTGATGTTCAAGAGCAACTCTTTAATTGTAA
GATTCCTATCACTTTATTGGTGCATATTTACTAACTACACAAACATAAAA
TATTATGCTAAAAAGAAATATAAACCTCTTTAAGTACTCTAAAAACACCA
AAAACATGATAAAAATACAAAAATCCAGAGCAAGTCTGCGACAGGATGAT
CATTTGAAAAATTTAGCAATGTTTACGAATGCTTGGTTACACCTACCTAG
CACTTGCAGACTGGAATCATTAAAATTTTATCTTAGCGAGTGAGTCCATA
TTTTAGACTTCGAGAATGTTCTAGAAGTTTCAACTACTTACGTTTTCTAA
TTTCTTTTCCGCACCACTGCCGCCGCCGCCACCGCCACCGCGAAAGCCTA
TTGTAATACTTTCGCTATGCGAAATTAACAAACCGCGCAATGTGGTGGCG
GATTACCCCTTTAATAATCTAGGAAAATTATTTTACTAAGATACCCTCCA
AAGATGTGTTTCGAATAATCATATTCCTACTAGGCAAAAAGAAAAGGTTT
TTAGAGGTGACCAATCAGAATTTCACTAATGCCCAAAATTTCTAGTAGGA
ATCAAAGAGATAATTTACTAAAATCACAAAAGAAAAGGACCTTCAAAGAA
CACTCAAGGACTCTCAGGACTTTACCTTGGAAAAAAGCGACCGGTTTAAT
GAGATCAAAAACTCTTTGGTGATGGTAGCAATGAATCCTTAAAATTCCCT
ATTTTTCAAAAACAAGACTTAGTATTTTCTATTTGATTTTTTATTACTCT
AACTAACTGGGACTCTGGGAGGTGTCATATCATTATGCTTCTTTCCATAT
TGGTTCTTCCTTATATAATGTGAAAATAAGTCTGGAAAGTTTCCTATTTT
TGTCAAATGGTTTCTTGTCAAGAAATGATAGTGATATTGAAATTTCTTTT
TCAATGATATCGTTATCAAGTACTTACCATTTTTGTTCTAACCAGTGCTG
CAAATAACAGCAGGTGACCGGTAAATACCAGTCATTTTGTAGTTTCTACC
GGTCATTCTGAAGCTTAGTTTTTCATTTTGTCCGGTTAAAATTTTAGATT
AGAGGCTTCTTAATAGCGCTTCTAATTAAAAGAGGAGCAGTTTTTAAATC
AAAATAGGTGTTTTAGCCAATCTAACGGTCCTTACAGACTACAAATTTTC
TAAGATGGTTCCGCCAGACCCCCTGCTCGTTACACTCAAAATATTACCGG
CCAACTGAAATTTCCCTATTTGCACCACTGCTAACACACATAATAATGTG
CCCTTTAACCTTATACCTTCTGTCTTTTTCTTAGACTGATTTAACAGAAA
AAAACAACAACAACATGAATGCTAAAGGAGAGCAATCTACAAGAAAAAAG
AACAACAAAAAGTCTAATGATGAGAATACTAATGCACAAAGCAAGGCAAA
GAAGCATCATCCCCAAAAGAAAGACCAACAGAAGGACAGAGGTAAACCTA
AGCAAAATAATGAAGAAAAAGATACCATCAAGAATGAGTCAACATCTCCT
AAAAAGAAACACCATTCTAATAAAAAGTTACCTGAGATGAACTTTGCTCC
ATACTTGTCAAAGGAAGAATGTTCTCAAAAACTGAAGCGTGGGGAATTGA
TTAAAGGTACTCTACGAATTAATCCAAGAAATTTCGTAGATGCTTTTATA
AGCTCAACAGATAGCAGTGAAAGAGATATTTATATTGAGGGTGTCGCAGC
AAGAAACAGGTCACTGCCTGGTGATATTGTGGCTGTCCAGCTTAACCCAA
AAGAAGAATGGAAAACAAACCGTCCTGGTGAACCAGACGAGAAATCTGAT
AAGGATGTTGTCACCAAAACTGGCAAAGTTGTTTACATTTTGGAAGAGAA
ACATCCTCGAGTGGCGTGTGGTTTTCTGAAACCATTTTGCCATAATCAAT
TTGGCTTCGCTTTACTTTCGCCCAATGACAATCGTTTACCAAGATTGATG
ATCCCATTGACAGAATGCCCTGATGATTTTAAAAATCAATTTTCAAACTA
TGTAAAGACATTGTTTATTGCCAAAATTGTAAAATGGGAGAAGAATAAAG
CTTTTGCAGGTGGAAAGATCATGCGAAGTCTTGGAGAAGCTGGCCATATT
GAGCCAGAGACAGAATCAATATTACTTTGCAATGATATTGACAGCTCACC
ATTTTCAGAAAAAGTTTTGCGTTGTTTGCCAGATGGTAAGACATGGAAAG
TGACTTCTGCTGAACTGTCTAAACGTCGAGATATGAGAAAAGAATGTGTT
TTTACTATTGATCCTGCAACTGCCCGTGATTTGGACGATGCTTTATCATG
TAAAAAAATAGCTGATGGGTTGTATGAGGTTGGTGTGCATATTGCTGATG
TCAGCTATTTTATTGAGCAGAATACAGCCCTTGATGATGTAGCTAGTCAA
CGAGCTACCAGCGTTTATTTGGCTCAGAAAGTTATTCCAATGTTACCCAA
TATTCTATGTGAGCAGTTGTGCAGTTTGAATCCTGGCGTGGAGAGACTAG
CTTATTCTGTATTCTGGAACATGAAATCTGATGGGACTATCATGAGTGAA
TCTTTTGGCCGTACCGTTATTAGTTCTTGTGTCAAATTGTCTTATGACCA
TGCACAGAGAATGATTGAAACTGATGATGTAAATGACCTGGTTATTGATG
AATTTCCTCCGATCACTGGTGACTTTTCAATGTTAACTATCCTAAATACA
GTCAAAAACTTATTTGGGATGTCCAAACATCTTCGCCAGAAACGTTTTGA
CAGTGGTGCCTTGAGGTTGGATCAGCCTAAACTCTCTTTTACCTTAGATA
GCCAGTCTGGGATGCCAAATGGTTGTGCTGTGTATCAATACAAAGATAGT
AATCGAATGATCGAAGAATTCATGTTGTTAGCTAACATGGCTGTTGGTCG
AAAGATTTACAAGCATCATCCAAACCGTGCTGTTCTTCGAAATCATGCAC
CACCACAGGAAGTTATGATGGAAGAGGTTGCTGAGACTTGTAAAAAGTTT
GGTATCCCATTCGACATCTCGAACAGCTCTACTATTAGTGCTTCTCTCAA
ATCGATTTTGGCCAGGGAGGATAGTGGATTTAACAAGGAGACTTTGTTTA
CAGCTTTGACGATGCTTTGCACCAAGCCATTCCAAAATGCGAAATATTTT
TGTACCGGCACAATTGAGAATGAATCAGCTTATCGTCATTATGCCTTGAA
TGTTCCCATTTATACTCACTTTACATCACCGATTCGTCGTTACCCAGATG
TGATGGTCCACCGTCTTCTAACAGCATCACTTGACAAATCATTCGTAGTG
GAAGCAGATGTTGATCAACTCCAAACGCAATCTGATCACTGCAACGACAA
AAAGTGGGCTGCCAAGAAAGCTTCAGAGCAAAGTTCATTGCTTTTCTTTG
CTGTTTACTTGTTAGAATGTGGACCGTTGATGGAGAAAGGTGTTGTTGTC
GGTGTCCTTGATAAAGCTGTAGACGTTTTGTGTACAAGAGTCGGTAACGT
TGTCAGAGCTTACATGGATAAGTTACCATTAATCAAGTATCAATTCACCA
CCTCTGATGGAAAACCTAAGTTGGCCTTGTATTGGTTTCCTGAAGATTTG
GATAGTAGTGAAAAGCCAAAAAATATCAATGAGGAAATCGCCAAATTGAC
AGAACGATTCGAAAAGAAATGGGAGGCACAGAAGGAGCAATCTGATGCGA
TACCAGAGGATGCTTTGAAACAAGAATTATGCTTGTTTTCTGAAGTCAAT
ATCCTATTGAAAGTTGAACGTGATTTACCAACAAAAATTTTAGGCATTCT
TGCTCATCCAAAAAATGAAAATACACCGTTACTTGAATTTTAATATTTTA
TCATTTTAATTATTATTTTTAACAAATTCTTTTATCCTTTTACCACTGAT
GACACTTAGTAGAACAGTTTCAAAAATTGTGTGACATTTTTTAGAACACA
AAAAATGGACAAAAATCTTTAAAGTTGAATAAAATCTACTCAAATCAATT
ACAAGTCTTGAAATTTTGACAGGAAATAGGAAATTTTATCAGGTTTTCAA
AAATATATTTATGAAGTCATTCTTTGTGACAATAAATGACTTACTAAATG
AATTACCCTGTTAAGTTCAAAGTATGTCAATCTCTGTCACAATCAACTTT
TGAATATAATTTAAACATAAATCCATGTTTTCATACCTTCTATATCATCC
AGTAGTTAAATATGAACAACTTTCAGTGTTGATTATGCCAATAAACGACT
TACTTTATGGGTAAAAAGCTGAAATATGTCATCCTTAAAGTAAGTCATTT
TTGTCACACTTCACCTTCTGGGTATAACTTGAGATATAGTAAGTCAATTT
AGGTAAAAAATAATGCATTATTTAGGGGATATATCTGGCTTAACCATATC
AAAAAATATAGACATTATGCACAATGTGCTCTGTCTCTATGAGACAGTTT
TGTGTGAGCCTTCAAAAATTTCACACACCCAGTACTGAATTTTTGAAACT
GTTCAGTATGGGTGTTCTCTTTTATCATATATGGTGGTTGTAATCGCAGG
TTGTTACTGACATTCAGACTCGAGATAAACACAAGTTTTCTGTGCTGAGC
AACACCAAAGGCGAAGGTGTCCTTTTTTTAATAGCCTTTGTTCTTGCCTC
TAATTATGCTTCTGTTTTCTCAAATTTGGTGCAAAGGGAGATTTTGTTTA
AAAAAACCGTAAGGTATTTTTTGACAAGTTTTAGTATATTCTAATTATTG
AGCGTATAATATTGTTACGAATTTTAAGTGTATTTTGTTTATTTCGTTCA
ATGGTACACAAGTTTTCAAGTTGATAGAAAGAAAATCTAAAATACTTGCG
TTTTCAAAGTACTTCCTGTCCTGCACCTTTTATACTCTTGTTTTAATGAT
AATGATAAAGATTTTTGG

Coding sequence (CDS) from alignment at sc0000187:140906..146123-

>TCONS_00014419 ID=TCONS_00014419|Name=TCONS_00014419|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at sc0000187:140906..146123- (Clytia hemisphaerica)
ATGAATGCTAAAGGAGAGCAATCTACAAGAAAAAAGAACAACAAAAAGTC
TAATGATGAGAATACTAATGCACAAAGCAAGGCAAAGAAGCATCATCCCC
AAAAGAAAGACCAACAGAAGGACAGAGGTAAACCTAAGCAAAATAATGAA
GAAAAAGATACCATCAAGAATGAGTCAACATCTCCTAAAAAGAAACACCA
TTCTAATAAAAAGTTACCTGAGATGAACTTTGCTCCATACTTGTCAAAGG
AAGAATGTTCTCAAAAACTGAAGCGTGGGGAATTGATTAAAGGTACTCTA
CGAATTAATCCAAGAAATTTCGTAGATGCTTTTATAAGCTCAACAGATAG
CAGTGAAAGAGATATTTATATTGAGGGTGTCGCAGCAAGAAACAGGTCAC
TGCCTGGTGATATTGTGGCTGTCCAGCTTAACCCAAAAGAAGAATGGAAA
ACAAACCGTCCTGGTGAACCAGACGAGAAATCTGATAAGGATGTTGTCAC
CAAAACTGGCAAAGTTGTTTACATTTTGGAAGAGAAACATCCTCGAGTGG
CGTGTGGTTTTCTGAAACCATTTTGCCATAATCAATTTGGCTTCGCTTTA
CTTTCGCCCAATGACAATCGTTTACCAAGATTGATGATCCCATTGACAGA
ATGCCCTGATGATTTTAAAAATCAATTTTCAAACTATGTAAAGACATTGT
TTATTGCCAAAATTGTAAAATGGGAGAAGAATAAAGCTTTTGCAGGTGGA
AAGATCATGCGAAGTCTTGGAGAAGCTGGCCATATTGAGCCAGAGACAGA
ATCAATATTACTTTGCAATGATATTGACAGCTCACCATTTTCAGAAAAAG
TTTTGCGTTGTTTGCCAGATGGTAAGACATGGAAAGTGACTTCTGCTGAA
CTGTCTAAACGTCGAGATATGAGAAAAGAATGTGTTTTTACTATTGATCC
TGCAACTGCCCGTGATTTGGACGATGCTTTATCATGTAAAAAAATAGCTG
ATGGGTTGTATGAGGTTGGTGTGCATATTGCTGATGTCAGCTATTTTATT
GAGCAGAATACAGCCCTTGATGATGTAGCTAGTCAACGAGCTACCAGCGT
TTATTTGGCTCAGAAAGTTATTCCAATGTTACCCAATATTCTATGTGAGC
AGTTGTGCAGTTTGAATCCTGGCGTGGAGAGACTAGCTTATTCTGTATTC
TGGAACATGAAATCTGATGGGACTATCATGAGTGAATCTTTTGGCCGTAC
CGTTATTAGTTCTTGTGTCAAATTGTCTTATGACCATGCACAGAGAATGA
TTGAAACTGATGATGTAAATGACCTGGTTATTGATGAATTTCCTCCGATC
ACTGGTGACTTTTCAATGTTAACTATCCTAAATACAGTCAAAAACTTATT
TGGGATGTCCAAACATCTTCGCCAGAAACGTTTTGACAGTGGTGCCTTGA
GGTTGGATCAGCCTAAACTCTCTTTTACCTTAGATAGCCAGTCTGGGATG
CCAAATGGTTGTGCTGTGTATCAATACAAAGATAGTAATCGAATGATCGA
AGAATTCATGTTGTTAGCTAACATGGCTGTTGGTCGAAAGATTTACAAGC
ATCATCCAAACCGTGCTGTTCTTCGAAATCATGCACCACCACAGGAAGTT
ATGATGGAAGAGGTTGCTGAGACTTGTAAAAAGTTTGGTATCCCATTCGA
CATCTCGAACAGCTCTACTATTAGTGCTTCTCTCAAATCGATTTTGGCCA
GGGAGGATAGTGGATTTAACAAGGAGACTTTGTTTACAGCTTTGACGATG
CTTTGCACCAAGCCATTCCAAAATGCGAAATATTTTTGTACCGGCACAAT
TGAGAATGAATCAGCTTATCGTCATTATGCCTTGAATGTTCCCATTTATA
CTCACTTTACATCACCGATTCGTCGTTACCCAGATGTGATGGTCCACCGT
CTTCTAACAGCATCACTTGACAAATCATTCGTAGTGGAAGCAGATGTTGA
TCAACTCCAAACGCAATCTGATCACTGCAACGACAAAAAGTGGGCTGCCA
AGAAAGCTTCAGAGCAAAGTTCATTGCTTTTCTTTGCTGTTTACTTGTTA
GAATGTGGACCGTTGATGGAGAAAGGTGTTGTTGTCGGTGTCCTTGATAA
AGCTGTAGACGTTTTGTGTACAAGAGTCGGTAACGTTGTCAGAGCTTACA
TGGATAAGTTACCATTAATCAAGTATCAATTCACCACCTCTGATGGAAAA
CCTAAGTTGGCCTTGTATTGGTTTCCTGAAGATTTGGATAGTAGTGAAAA
GCCAAAAAATATCAATGAGGAAATCGCCAAATTGACAGAACGATTCGAAA
AGAAATGGGAGGCACAGAAGGAGCAATCTGATGCGATACCAGAGGATGCT
TTGAAACAAGAATTATGCTTGTTTTCTGAAGTCAATATCCTATTGAAAGT
TGAACGTGATTTACCAACAAAAATTTTAGGCATTCTTGCTCATCCAAAAA
ATGAAAATACACCGTTACTTGAATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008060XLOC_008060Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014419-proteinTCONS_00014419-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014419-exon-sc0000187-1575043694:146036..146123TCONS_00014419-exon-sc0000187-1575043694:146036..146123Clytia hemisphaericaexon
TCONS_00014419-exon-sc0000187-1575043694:140906..144539TCONS_00014419-exon-sc0000187-1575043694:140906..144539Clytia hemisphaericaexon
TCONS_00014419-exon-sc0000187-1510915933:146036..146123TCONS_00014419-exon-sc0000187-1510915933:146036..146123Clytia hemisphaericaexon
TCONS_00014419-exon-sc0000187-1510915933:140906..144539TCONS_00014419-exon-sc0000187-1510915933:140906..144539Clytia hemisphaericaexon
TCONS_00014419-exon-sc0000187-1491911889:146036..146123TCONS_00014419-exon-sc0000187-1491911889:146036..146123Clytia hemisphaericaexon
TCONS_00014419-exon-sc0000187-1491911889:140906..144539TCONS_00014419-exon-sc0000187-1491911889:140906..144539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:140906..146123 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16415	2.44409	19.9015	22.8049	12.0665	9.901	13.8148	15.1577	10.6293	11.3108	8.92198	8.36026	7.83818	6.9961	8.05129	7.71101	10.0831	8.24715	4.66992	6.63922	8.89525	9.14937	11.0003	13.5381	17.9991	15.3477	11.4862	9.54701	10.7714	11.6144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033771Rrp44_CSD1
IPR022966RNase_II/R_CS
IPR028591DIS3L2
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:00001753'-5'-exoribonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0034427nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
molecular_function GO:0000175 3'-5'-exoribonuclease activity
Blast
[Close]
BLAST of TCONS_00014419 vs. Swiss-Prot (Human)
Match: DI3L2 (DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4)

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 299/594 (50.34%), Postives = 411/594 (69.19%), Query Frame = 2 
Query:  638 YILEEKHPRVACGFLKPFCHNQF----GFALLSPNDNRLPRLMIPLTECPDDFKNQFSNYVKTLFIAKIVKWEKNKAFAGGKIMRSLGEAGHIEPETESILLCNDIDSSPFSEKVLRCLPDGKTWKVTSAELSKRRDMRKECVFTIDPATARDLDDALSCKKIADGLYEVGVHIADVSYFIEQNTALDDVASQRATSVYLAQKVIPMLPNILCEQLCSLNPGVERLAYSVFWNMKSDGTIMSESFGRTVISSCVKLSYDHAQRMIETDDVNDLVIDEFPPITGDFSMLTILNTVKNLFGMSKHLRQKRFDSGALRLDQPKLSFTLDSQSGMPNGCAVYQYKDSNRMIEEFMLLANMAVGRKIYKHHPNRAVLRNHAPPQEVMMEEVAETCKKFGIPFDISNSSTISASLKSILAREDSGFNKETLFTALTMLCTKPFQNAKYFCTGTIENESAYRHYALNVPIYTHFTSPIRRYPDVMVHRLLTASLDKSFVVEADVDQLQTQSDHCNDKKWAAKKASEQSSLLFFAVYLLECGPLMEXXXXXXXXXXXXXXXCTRVGNVVRAYMDKLPLIKYQFTTSDGKPKLALYWFPEDLD 2407
            YILE+KH R A GFLK            +AL SP+D+R+PR+ +PL +CP DF  +  +Y  TLFI +IV W+++  FA G++ +SLG+AG IEPETE IL    +D S FS +VL CLP G  W +   E SKRRD+RK+C+FTIDP+TARDLDDALSCK +ADG ++VGVHIADVSYF+ + + LD VA++RATSVYL QKV+PMLP +LCE+LCSLNP  ++L +SV W +  +G I+ E FGRT+I SC KLSY+HAQ MIE+     +   E PPI+ + S   +   V NL G++K LRQ+RF  GALRLDQ KL+FTLD ++G+P GC +Y+Y++SN+++EEFMLLANMAV  KI++  P +A+LR H PPQ  M+ ++ E C + G+P D S++  ++ SL      +     ++ +   LT +C++P Q A YFC+G +++ + +RHYALNVP+YTHFTSPIRR+ DV+VHRLL A+L     ++   D LQ Q+DHCND++ A+K+  E S+ LFFAV + E GPL  + +V+G+L +A DVL  R G   R Y + L L  + F     KP+L L W PED++
Sbjct:  237 YILEKKHSRAATGFLKLLADKNSELFRKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIES-PTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEV---LTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRERLDMAPDTLQKQADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKKPELTLVWEPEDME 826

HSP 2 Score: 97.8265 bits (242), Expect = 1.816e-20
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 2 
Query:  284 KNESTSPKKKHHSNKKLPEMNFAPYLSKEECSQKLKRGELIKGTLRINPRNFVDAFISSTDSSERDIYIEGVAARNRSLPGDIVAVQLNPKEEWKTNRPGEPDE 595
            KN ST  KKK           F  Y+SKE+ S+ LKRG LI+G LRINP+ F +AFI S D  +RDI+I+GV ARNR+L GD+V V+L P+E WK  +P   D+
Sbjct:   38 KNRSTRGKKKS---------IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPD-GDRDIFIDGVVARNRALNGDLVVVKLLPEEHWKVVKPESNDK 131
The following BLAST results are available for this feature:
BLAST of TCONS_00014419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DI3L21.816e-2050.34DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 ... [more]
back to top