TCONS_00014419-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014419-protein
Unique Name	TCONS_00014419-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	842

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014419-protein ID=TCONS_00014419-protein|Name=TCONS_00014419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp
MNAKGEQSTRKKNNKKSNDENTNAQSKAKKHHPQKKDQQKDRGKPKQNNE
EKDTIKNESTSPKKKHHSNKKLPEMNFAPYLSKEECSQKLKRGELIKGTL
RINPRNFVDAFISSTDSSERDIYIEGVAARNRSLPGDIVAVQLNPKEEWK
TNRPGEPDEKSDKDVVTKTGKVVYILEEKHPRVACGFLKPFCHNQFGFAL
LSPNDNRLPRLMIPLTECPDDFKNQFSNYVKTLFIAKIVKWEKNKAFAGG
KIMRSLGEAGHIEPETESILLCNDIDSSPFSEKVLRCLPDGKTWKVTSAE
LSKRRDMRKECVFTIDPATARDLDDALSCKKIADGLYEVGVHIADVSYFI
EQNTALDDVASQRATSVYLAQKVIPMLPNILCEQLCSLNPGVERLAYSVF
WNMKSDGTIMSESFGRTVISSCVKLSYDHAQRMIETDDVNDLVIDEFPPI
TGDFSMLTILNTVKNLFGMSKHLRQKRFDSGALRLDQPKLSFTLDSQSGM
PNGCAVYQYKDSNRMIEEFMLLANMAVGRKIYKHHPNRAVLRNHAPPQEV
MMEEVAETCKKFGIPFDISNSSTISASLKSILAREDSGFNKETLFTALTM
LCTKPFQNAKYFCTGTIENESAYRHYALNVPIYTHFTSPIRRYPDVMVHR
LLTASLDKSFVVEADVDQLQTQSDHCNDKKWAAKKASEQSSLLFFAVYLL
ECGPLMEKGVVVGVLDKAVDVLCTRVGNVVRAYMDKLPLIKYQFTTSDGK
PKLALYWFPEDLDSSEKPKNINEEIAKLTERFEKKWEAQKEQSDAIPEDA
LKQELCLFSEVNILLKVERDLPTKILGILAHPKNENTPLLEF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008060	XLOC_008060	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014419	TCONS_00014419	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033771	Rrp44_CSD1
IPR022966	RNase_II/R_CS
IPR028591	DIS3L2
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000175	3'-5'-exoribonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
molecular_function	GO:0000175	3'-5'-exoribonuclease activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00955	RNB_2	coord: 304..658 e-value: 2.6E-129 score: 445.6
None	No IPR available	PFAM	PF00773	RNB	coord: 304..657 e-value: 8.4E-99 score: 330.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
IPR033771	Rrp44-like cold shock domain	PFAM	PF17216	Rrp44_CSD1	coord: 76..151 e-value: 1.7E-5 score: 24.5
IPR022966	Ribonuclease II/R, conserved site	PROSITE	PS01175	RIBONUCLEASE_II	coord: 625..649
IPR028591	DIS3-like exonuclease 2	HAMAP	MF_03045	DIS3L2	coord: 9..835 score: 18.094
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 76..170 coord: 198..256
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 263..700

Blast

[Close]

BLAST of TCONS_00014419-protein vs. Swiss-Prot (Human)
Match: DI3L2 (DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4)

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 323/717 (45.05%), Postives = 459/717 (64.02%), Query Frame = 0

Query:   65 KHHSNKKLPEMNFAPYLSKEECSQKLKRGELIKGTLRINPRNFVDAFISSTDSSE-----RDIYIEGVAARNRSLPGDIVAVQLNPKEEWKTNRPGEPDEKS---------DKDVVTKTGKVVYILEEKHPRVACGFLKPFCHNQF----GFALLSPNDNRLPRLMIPLTECPDDFKNQFSNYVKTLFIAKIVKWEKNKAFAGGKIMRSLGEAGHIEPETESILLCNDIDSSPFSEKVLRCLPDGKTWKVTSAELSKRRDMRKECVFTIDPATARDLDDALSCKKIADGLYEVGVHIADVSYFIEQNTALDDVASQRATSVYLAQKVIPMLPNILCEQLCSLNPGVERLAYSVFWNMKSDGTIMSESFGRTVISSCVKLSYDHAQRMIETDDVNDLVIDEFPPITGDFSMLTILNTVKNLFGMSKHLRQKRFDSGALRLDQPKLSFTLDSQSGMPNGCAVYQYKDSNRMIEEFMLLANMAVGRKIYKHHPNRAVLRNHAPPQEVMMEEVAETCKKFGIPFDISNSSTISASLKSILAREDSGFNKETLFTALTMLCTKPFQNAKYFCTGTIENESAYRHYALNVPIYTHFTSPIRRYPDVMVHRLLTASLDKSFVVEADVDQLQTQSDHCNDKKWAAKKASEQSSLLFFAVYLLECGPLMEKGVVVGVLDKAVDVLCTRVGNVVRAYMDKLPLIKYQFTTSDGKPKLALYWFPEDLD 763
            K  SN K  E  +   + +E C   L +  L   +   +P   V+A    +DS +     +++ ++GV           ++V ++ K     + P   DE +          +  + ++ KVVYILE+KH R A GFLK            +AL SP+D+R+PR+ +PL +CP DF  +  +Y  TLFI +IV W+++  FA G++ +SLG+AG IEPETE IL    +D S FS +VL CLP G  W +   E SKRRD+RK+C+FTIDP+TARDLDDALSCK +ADG ++VGVHIADVSYF+ + + LD VA++RATSVYL QKV+PMLP +LCE+LCSLNP  ++L +SV W +  +G I+ E FGRT+I SC KLSY+HAQ MIE+     +   E PPI+ + S   +   V NL G++K LRQ+RF  GALRLDQ KL+FTLD ++G+P GC +Y+Y++SN+++EEFMLLANMAV  KI++  P +A+LR H PPQ  M+ ++ E C + G+P D S++  ++ SL      +     ++ +   LT +C++P Q A YFC+G +++ + +RHYALNVP+YTHFTSPIRR+ DV+VHRLL A+L     ++   D LQ Q+DHCND++ A+K+  E S+ LFFAV + E GPL  + +V+G+L +A DVL  R G   R Y + L L  + F     KP+L L W PED++
Sbjct:  125 KPESNDKETEAAYESDIPEELCGHHLPQQSL--KSYNDSPDVIVEAQFDGSDSEDGHGITQNVLVDGVKK---------LSVCVSEKGREDGDAPVTKDETTCISQDTRALSEKSLQRSAKVVYILEKKHSRAATGFLKLLADKNSELFRKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIES-PTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEV---LTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRERLDMAPDTLQKQADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKKPELTLVWEPEDME 826

HSP 2 Score: 98.9821 bits (245), Expect = 4.451e-21
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 0

Query:   56 KNESTSPKKKHHSNKKLPEMNFAPYLSKEECSQKLKRGELIKGTLRINPRNFVDAFISSTDSSERDIYIEGVAARNRSLPGDIVAVQLNPKEEWKTNRPGEPDEKSD 162
            KN ST  KKK           F  Y+SKE+ S+ LKRG LI+G LRINP+ F +AFI S D  +RDI+I+GV ARNR+L GD+V V+L P+E WK  +P   D++++
Sbjct:   38 KNRSTRGKKKS---------IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPD-GDRDIFIDGVVARNRALNGDLVVVKLLPEEHWKVVKPESNDKETE 134

The following BLAST results are available for this feature:

BLAST of TCONS_00014419-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014419-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DI3L2	4.451e-21	45.05	DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 ...	[more]

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TCONS_00014419-protein (polypeptide) - C. hemisphaerica