XLOC_020388 (gene) - C. hemisphaerica

Overview
NameXLOC_020388
Unique NameXLOC_020388
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001242:44383..54274-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_020388 ID=XLOC_020388|Name=XLOC_020388|organism=Clytia hemisphaerica|type=gene|length=9892bp|location=Sequence derived from alignment at sc0001242:44383..54274- (Clytia hemisphaerica)
CATTTCTAATACATGTTTTTCAATACATACTCTAGATGATGATCAAGATT
TTGTCTCAGCTGAAAATCAACCCAAAGGTACACAGTTAATATCTCATTTT
AAACTTTCAATAGATTTATGTATCAATGATCAATTGATATAAATTGATTA
TTACGAACTTTATTTAAACAAAATACAAAAACGTATTTACAAATTTAGAA
AACATACTAAACATCGTACTTCAAGTTGTTCGAAAAATGTTGAAATATCA
TATTTCGAGACATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNTATCTTGACACTATCTTGACACTACCTTGACACTA
CAAACTGACAGTTGAACATTATTAAGTTATTATAACCTTTGGCATGCAAT
TAAATTCCAAAATTCGAAATTTCTAATACATGTTTTCCAATACATACTCT
AGATGATGATCAAGATTTTGTCTCAGCTGAAAACCAACCCAAAGGTACAC
AGTTAATATCTCAAAAACTTTCAATAGATTCTATGCAATTTTAGATTTGA
TCAGATTTGATAAATTTCTAGAATTGATCAATTTTTTTATCTTTTTTAGA
CTTCAAAGATGAAATTAAAGCCTGTGAAATCTTACAGATTTTTATGAAAT
GTAGAGAAGCAATTGTTCTTGAACAAGACTTCCAAGCTTTGATCAAACAA
AGCTTATTTGATCCGAACTTCCCATCTACAGGAACTCCATCTTTACTCAT
TGCAGAAAATGAAATTTTGTCACTATCGACTTACTCAAAATGCACTGATG
GTATCTTTCATGTTATGCCATTAATATTTGAAGTTTGTGGGGAAAATCAG
CTATATCTAAGGTATATAATTTACTATCAGATTTTCTTTTGTAAATATTG
TTCATGGTTTCAGCCCCCTGGATTTCTTAAGGGCCCCTAGGCCAAGTGTG
GAGTTTTGGCCTAAAATTTAGCAAATCTATGGGGTTACCTGTTCATTGGG
GGTACATAGCTGCTCCTGATAGAGGCTCTATCTAGGTGCTGTTTGTTTAT
CTGTATTTTCCAAATGGAATACTTCAGAGTATAAGTTGAAATCTTTTGGC
CCATACTTTCTCATTTTTGTTTTTCTTTTCCAGTTTTTTTTTTTCATTGT
GCTGCCATTCTTCATAGCATAACAACAAAGCTTTTTTACAAAAAAATTCT
CGGGTGAAGGGGAGCACCTAACCCAGGAGCAAATTCTTAAGGGTAGCTAA
ATCATTGCGGCACCTTATTTCGTTTGGTGTACCTAAAAAGTGGGCTGAAA
CCATCTTGTTGAATTATTGAAAGGAAAACTTTGAAAACTGACACTGAGCT
TAAAGGTAACATAAAATACTATTTTTTTCCAGATCGTTTGAAACAGGTGT
TTATCAAGGGTTTATTCAGAACAACTGGAAAACATTGTTTAATGACATTA
TCACAAAGTTCAAAATTAAGCATTGCAATATTGTGTCGATTTATAATACT
TGGGATGTTCTTGCTGCTCAACATCGTCGAATCGAAACTAAAAATAGTAA
GGAATTCTTTTTCATAGTTTCAATGCAGGTCCTCTTTTTGGTTGAAGTTA
ATTTGGCTAATCTAAATTATTGTAATCTAAAAATGTTTATTGTATACCAA
TTTATAAACCAAAAAGTGGTNTTGTAATCATACATGATCAATCTAAGTAT
CAATCAGATTCGTGCTCCCTGGTCAGTAAAATGTGGTTCTATGCATTCAT
TTTCGGTATTTCTTATCTGGTCTGTAAAATATTTAGGTACCCCACAACCT
AGCCCAATTGGCTAGCCCAATTGGCTACCCTGCTTTTTAGACCAACCCCC
AAAAAGTAATTTTATGTTTAATTTCTCTTTGTACAAGGCTCTACATCAGA
CAGAAATTTTGACCAAAAGAAACAAAGCAATAAGTCATCCATTCAGAGAA
ATCTACCGGTTGCTTATTCCATATTCAAGCAGTCGTTTGGTGATAATGCG
CCTGGATTTGTCTTCTTTACTCGACGAATGACTAAATTTACGAAAAAAAT
TGCCCGAATAAGGAGTAAGAGTTTGTTTTCCATCGTCACACTAAGAGCAA
CTAAAGATAGACAAGTAATAAGTAAAGTATGAAAGCAATAAAACATCAGT
ATTTCTTCTTGTTTCTTGTTAAACGGGCCTTTAAGTGTCTTTTGGTATTA
TAAACATCCATTCGATTTTCAAATTAAATTTATAAGAAAAACAAAAACTT
CGTAACGTTTTTACAATTCTTTATTTATTTTATAGGTTTTACAAGATGGT
TGGACTTGGTGACTCTAGACAGGGCCGGCGAATCAATTTTGAAAGTGGAT
GGGCCAAATAGTAAGTGTCTAAGGAGGCGCCACCATGGTTGGCGCCGACG
GACCTTTCTTAGCAAAAAAGTGGGGGGGGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAATGGGGTAGCCAATTGGGCTAGGCTATGGGGTA
CCTCTTTTTGCCTAAACTTTTGAAATCTGAAACCTGTTTTCATGTGGAAA
TAACTATTACAACATCTTGTTAATGCNTTGTGTCGATTTATAATACTTGG
GATGTTCTTGCTGCTCAACATCGTCGAATCGAAACTAAAAATAGTAAGGA
ATTCTTTTTCATAGTTTTAATGCAGGTCCTCTTTTTGGTTGAAGTTAATT
TGGCTAATCTAAATTATGTTTATTGTATACCAATCTATAAACCAAAAAGT
AATTTTATTTTTAATTTCTCTTTGTACAAGGTTCTACATCAGACAGAAAT
TCAAAAATCTTTGACCAAAAGACACAAAGCAACAAGTCATCCATTCAGAG
AAATCTACCAGTTGCTTATTCCATATTCAAGCAGTCGTTCGGTGATAATG
CGCCTGGATTTGTCTTCTTTACTCGACGAATGGCTAAATTTACGAAGAAA
AATTGCCCGAATACTGAGTAAGAGTTTGTTTTCCATCGTCACACTAAGAG
CAACTAAAGATAGACAAGTAATAAGTAAAGTATGAAAGCAATAAAACATT
GGTATTTCTTCTTGTTTCTTGTTAAGTGTAAATGTTTTCTTGTTTTAAAC
GGGCCTTTAAGTGTCTTTTGGTATTATAAACATCTATTCGATTTTCAAAT
TAAATTTATAAGAAAAACAAAAACTTCGTAACGTTTTCACAATTCTTTAT
TTATTTTATAGGTTTTACAAGATGGTTGGACTTGGTGACTCTAGACAGTG
GAAGACAGAGTTACTAAATTATAAAATGAGTACTAGTATTACGTCAGAAA
AATCTGCCATACTGCAATCGTTGCAGACTTTTGGTCAAATCGAAAATCTT
CCAATTGAATGTCAATTTCAAATTATTTCTTCCTTACCAAATTACCATAA
GTGGGCGTACAGGAAAAACACTAGTGTTAAGAAGAAGCAGTACTTTACAC
CAAATGGTCTTTCACCAAGAAATTTGATGATCCAATCCTTTGATGACGCA
CCTATGAAAAAAATTATCTTTCTCAAATTGAAAAACGCTTTCAATATTAA
ATATATTCCAAGTGGAAGTTACAAAAAACGAACAAAGGTTTTTACAAATT
ATTTATTTAATTAAATTTGCATTGCTCAGAGATTGAATTAACGGTCGGTT
ATCGGATAAAACCAAGAAACAAAAATAAAAAACAACCTTATATTTTTCCA
TCTTTAGATAATAACCGACTAGTATTTCAGCTTTTTTTCTAGATCTCCTC
TGGCTGAACCAAAATTGATATTAAATACGAATGATTTATTAAAATAACAG
ACAAGAAAAAAAAAGCCCTATTTTGTTTCTTTGTGTTGTCTTATAAACTT
TTTTTGAAAAATTTATTATCTAATATAAAATTTGATATATTTTCAGTCCC
AAAATTCTGGAAAACGTCGAGCAAATGTTGATCGAAGTTTTCTCCTCGAA
CATCTTGGCGTTACGGAAGACGACTTTGCTCAAACATATACTGCCAGTTT
ACCATCAGACATGTATGAAGAGTTCAAGCGAGCAATATATTTGGACAGCA
CACTCTTGTGGCGGGAAAAAAGTCGCAGACTCCAAACTGTTGTGATGAAC
GATTACAATTCTGTTTCTGGATTAATTAAAGTAAGATACGTTTTAACCTT
GAAAATATTAAAGTCTATTCACGATAAGTGTACACTCTTTTTTCTTTTAC
CTATAACTTTTGAAAGAATTCTTCAATCTTTATAAATTTGGTATCGTTGG
AGAGANNNNNNNNNNNNNNATCGTTGGAGAGATATTTGTGAGTGGAACAA
TTTGAAATAAAAAAATCTTCAAAAAAATTCTAAAAATGAAGATGAAAATG
AAGAAGAAAATAATGAAGATCTTGTAGAAAAGTGCTATAACTTTTACTTT
CACTGGAGATATTCTTTGATCTTTGGAGGTCATCACTGTGAAGAAATTTC
ACAAAAATATTTATTCAATACAAAGTTATAATGATACAAAGTTAATAAGT
GAATAACCCCAAAAAACAGCAGAAAACAGCAGAAAACAGCGTTTTTAGAC
GTCAATTAGCTTATAACTTTGTTTGATATCTTTTGATTGAATGATTATTT
TTGAGAAATTTTTTCACAGTGATGACGTTCTATGATCAAGGTCTCACTTC
AGTGAAAATGATAGTTATAGCACTTTTCTACAAGATCTTCATTTTTTTCT
TCTTCATTTTCATCTTCATTTTCAGAATTATTTTGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCTTTCCAATGACACCAAATTTATAAAGATTGAATAATTCCTTCAAAAGT
TATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATT
ATCATAATCTTTGATGTATATACAAAATATAATTGTTTTGATTAGACAAT
CCTGCGTGCTTTCTGAAAATTGTTATTGTAGGTCATTTTTATAAATCTTA
TAGTTCAACGAATTCGTGACCACAACTCGCAACGTTGAAGACAATCATAC
TAACATACAATGCGCGTGTGAAACGTTTAAAGTGCTATCGACAACAATTG
GTTCATCGGATTGGGATGGTGAAAGTTGTATGCACGCTCGCTTGCTTGAA
AATATTATTGAAGAGGTTAGTCAATTGTTTTAGAATTATCGTTTATGAAT
TTTGATTTCAATACCAATAGTTTCCCGTGTCTCCACGATCATAAGTTGAA
AATTGAGAAAGTTGAAAATAAATTTAAAATATATATCTTTTGAGAAAATA
AATTCATATAATGAAGTTTGGTTTTTAATAGATCTTTTCTGTGTTAAGAT
GACATGTTATAATGTCCAGTATAAATTGTATTTATTTTCACCGGCTCACT
CTCCGTTCTTTCTTTTATTATATTTTCAGTTTAACATCGATTTCCACGAA
TCTAGCGAACATGGTTATTCAATTCCTCAGTCGAACATGGAAATGGGAAC
AGTTGTTGCTAGCAAAATTAAGATGTCATTAGAGGCTGTTACACAAGATG
TTATTCTGCTATCATCGGCCGAAACGATTGAAAAGTTTTCCGTTCGCTCA
ATTTCCAGTCACCAATTTGTGCACATCTTCGCTTCAAACGATAAGACACG
CGTGTATGTCAAATGCTCATCAGGCTTGTGTGTGCATGCTCATTCAAAGA
AAGTTTTGCTTCGGAACTTAGAGGAAGATGAACGCTGTGATCATTTGGAG
GTGTTCAAACGCTACAATGACGAGAACTGGCAAAATCATCCTTTGATGCA
ACTTCGCAGTGAGACGCCTGAACCTAATGTACCAAGTGATGGTGAAACTG
ACAGTGATACTGATGGAAATCAACAAGAGGACGATCACTCGCCACTAATT
GATGAAAACCCTTTTGAGAAGGTATAGAAATATTGAACAATATTTTTTGA
AAAGCTTTACTTTTCCATTTTTATTGTGGCTCTTCCAGGTTATCAGTGGA
ATAACTGTCAAAGTTTAGGACAGAAATGAGTAAAAAGGTTCTAAGAAATA
AAGAGAAGCTGCAACGACTTGTTTTTTCTCATCACTAAATTTTGAATGTT
GTTTTATAGACCAATGGTTTCGACTCATCGACCGGGAAGTGGTCCTTCTA
TTCACCATACGCTCGCGATGTCAACCTAAAACGTGAAGATTTAGAGGAAC
AGTTTCTTCAGCATTACGAATCCAGTCTTCAAGCATTACGTGACAAAGAC
TTCAAATTGTCTTTTTATCCAAAGCCTCTTCTGCCCACATGTGCCTGTGA
GGTATGTTTTTCAAGAGTTTACAAAAATGTGCCATTTTGTTTCTTTGACA
GTAATTACTGAAAATGGGATCTTCTAGAGCTTAAAAATCTTTCTATTGAC
TATTTGCCTATCATATTGTTCTGTTAATAAATGTTTATCGTTTTCTTGTT
TCCCGTGTTACCGTAATACTGAAAAGCACTTGCTTAAAATTCTTTGAGAC
AGGGTTAGTATATTATGGTATGAATTAGAGAGATCCCTCTGCACACGACT
TCTTTTGGGTAAAATAAAGAGCACCCAGGCCATGGAGCACCTATAAATTA
AAAACAGTACCCAGCAGTGCGATGTTAGCTTTTTTTGGAAATAGATGTAT
AGTAACTGATAGAAATACTAATAGAAAGAGTACCTTTTTATTCTTCTTCC
TTTACTTAAGCTTGAGAATTGGTGCTTATTTTAGATACCTTGGCCACAAG
ATGATGATGATGGATATTTGTTTACCAAAGAATGTTCCGCATCGTTTTCC
ACCAATTTAACGATGATACCGTGTGATGTTTACAAACTGTCTTGCTCGGA
GAATAAGTGCACGTTGAAATGGGATGGACAGCTTGATGGAGTGTATCGAA
TCTCGCAACAAACCTGCTTTACCGAAAAGCTCTGCTGGGACTTCGTTGAT
TCAGTGTCCACAATAAAGTCAAACTTTTCATCCTAATTTCCAACACATAC
ACATGTTTGGGAACACGTCCCTTTGTTTCTGCGAAAACCTTCTCGAAGTT
GTTTTTCTCTTGGGCCAGTCACCAACCCAGAGAATTTCGTAAAAGCTGTA
CTTGGTGTGGTTGAGATCCAAAAGTGTTGCCTTGTGATGGTACAAAGATC
AGCATTTTGCACCACAACATGTCANTGGTTGTGATCCCAAAGTGTTGGCT
TGTGATGGTACAAAGATCGGCATTTTGCACCACAACATGTCAATTACACC
CATTGAACAAACGAACCCCGAAGCAGTAACAGTACCAACCCCTAATCGCC
GCTTCGATCGATGTTTCTTGACCTACCCCAAAACGTCGCAGAATGAAAAT
GAAGATGAACACAAGAAGAAGTGCGAAAACGTTAGAAGTGCTCGAGATTT
TCTCAAACTATTTACGGCGAAAGTCCCGGACCAGAAACTTGCAGAAATGC
CTATAGCAGAACAAACTAAGCAAAAACAAAACGTCATTTCTTTGCTTTCA
GAAGACTGTAAACCCTTAGCAAAGAGATTTTTCCTGCAACATCTGATGAC
GGATCAGCTTGCAACAACAAAGCGCTGCCTTAACGTTTTAAGCTATGATA
CACCACTGCGCGCATTTTTGCCACATAACCTGATCAACGTGATAGCACCT
TTGTTAGAAATCGAGAACGGATTATCCTTAGACAAAGTCCAAAAAATCAT
CAGAGAAACAAGACAATACAGTCGGTACGTTGGCAACTGGATCAAGTCTT
TCTCAAGTAATACCACGATCGACAATGACTTGGTTTCTTTCTTGAAATGT
CTGGTTGACGAAATCTTGAAAGTTGAGGCACAGTGCGTAGCTCCGCCAGA
AACTGAAGAAGGAGCTGGTCAATATAATCCTGCTAAAACGGGTGCCTTTT
ACTACTTCAAAGAGGATGGAGCGCCGGTCCGTAGTAATCGTCTTTAAGAT
ATCGAAAAAAGAAGAAAATAAATCGAAATCAAACAAATCTACCCATGATC
CAATCCATCTACCCATGATCCAATCCATCTACCGGTGATCCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00035036TCONS_00035036Clytia hemisphaericatranscript
TCONS_00035035TCONS_00035035Clytia hemisphaericatranscript
TCONS_00035034TCONS_00035034Clytia hemisphaericatranscript
TCONS_00035033TCONS_00035033Clytia hemisphaericatranscript
TCONS_00035032TCONS_00035032Clytia hemisphaericatranscript
TCONS_00035031TCONS_00035031Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00035033-proteinTCONS_00035033-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001242supercontigsc0001242:44383..54274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.99	1.11	0.44	0.23	29.78	23.16	35.75	42.34	36.99	28.76	38.94	46.08	34.53	35.33	8.62	14.52	11.79	13.87	8.07	10.74	14.3	10.77	5.79	8.39	38.88	56.84	11.96	8.3	9.27	7.93