TCONS_00035036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035036
Unique NameTCONS_00035036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035036 ID=TCONS_00035036|Name=TCONS_00035036|organism=Clytia hemisphaerica|type=transcript|length=1564bp
TCTTGACACTATCTTGACACTACCTTGACACTACAAACTGACAGTTGAAC
ATTATTAAGTTATTATAACCTTTGGCATGCAATTAAAttccaaaattcga
aatttctaaTACATGTTTTCCAATACATACTCTAGATGATGATCAAGATT
TTGTCTCAGCTGAAAACCAACCCAAAGacTTCAAAGATGAAATTAAAGCC
TGTGAAATCTTAcagatttttatgaaatgtaGAGAAGCAATTGTTCTTGA
ACAAGACTTCCAAGCTTTGATCAAACAAAGCTTATTTGATCCGAACTTCC
CATCTACAGGAACTCCATCTTTACTCATtgcagaaaatgaaattttgtca
CTATCGACTTACTCAAAATGCACTGATGGTATCTTTCATGTTATGCCATT
AATATTTGAAGTTTGTGGGGAAAATCAGCTATATCTAAGATCGTTTGAAA
CAGGTGTTTATCAAGGGTTTATTCAGAACAACTGGAAAACATTGTTTAAT
GACATTATCACAAAGTTCAAAATTAAGCATTGCAATATTGTGTCGATTTA
TAATACTTGGGATGTTCTTGCTGCTCAACATCGTCGAATCGAAACTAAAA
ATAGTTCTACATCAGacagaaattcaaaaatctttgaCCAAAAGACACAA
AGCAACAAGTCATCCATTCAGAGAAATCTACCAGTTGCTTATTCCATATT
CAAGCAGTCGTTCGGTGATAATGCGCCTGGATTTGTCTTCTTTACTCGAC
GAATGGCTAAATTTACGAAGAAAAATTGCCCGAATACTGAGTTTTACAAG
ATGGTTGGACTTGGTGACTCTAGACAGTGGAAGACAGAGTTACTAAATTA
TAAAATGAGTACTAGTATTACGTCAGAAAAATCTGCCATACTGCAATCGT
TGCAGACTTTTGGTCAAATCGAAAATCTTCCAATTGAATgtcaatttcaa
attatttcttccTTACCAAATTACCATAAGTGGGCGTACAGGAAAAACAC
TAGTGTTAAGAAGAAGCAGTACTTTACACCAAATGGTCTTTCACCAAGAA
ATTTGATGATCCAATCCTTTGATGACGCacctatgaaaaaaattatcttt
ctcAAATTGAAAAACGCTTTCAATATTAAATATATTCCAAGTGGAAGTTA
CAAAAAACGAACAAAGTCCCAAAATTCTGGAAAACGTCGAGCAAATGTTG
ATCGAAGTTTTCTCCTCGAACATCTTGGCGTTACGGAAGACGACTTTGCT
CAAACATATACTGCCAGTTTACCATCAGACATGTATGAAGAGTTCAAGCG
AGCAATATATTTGGACAGCACACTCTTGTGGCGGGAAAAAAGTCGCAGAC
TCCAAACTGTTGTGATGAACGATTACAATTCTGTTTCTGGATTAATTAAA
TTCAACGAATTCGTGACCACAACTCGCAACGTTGAAGACAATCATACTAA
CATACAATGCGCGTGTGAAACGTTTAAAGTGCTATCGACAACAATTGGTT
CATCGGATTGGGATGGTGAAAGTTGTATGCACGCTCGCTTGcttgaaaat
attattgaagAGGT
Run BLAST on NCBI

transcript from alignment at sc0001242:47258..52757-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035036 ID=TCONS_00035036|Name=TCONS_00035036|organism=Clytia hemisphaerica|type=transcript|length=5500bp|location=Sequence derived from alignment at sc0001242:47258..52757- (Clytia hemisphaerica)
TCTTGACACTATCTTGACACTACCTTGACACTACAAACTGACAGTTGAAC
ATTATTAAGTTATTATAACCTTTGGCATGCAATTAAATTCCAAAATTCGA
AATTTCTAATACATGTTTTCCAATACATACTCTAGATGATGATCAAGATT
TTGTCTCAGCTGAAAACCAACCCAAAGGTACACAGTTAATATCTCAAAAA
CTTTCAATAGATTCTATGCAATTTTAGATTTGATCAGATTTGATAAATTT
CTAGAATTGATCAATTTTTTTATCTTTTTTAGACTTCAAAGATGAAATTA
AAGCCTGTGAAATCTTACAGATTTTTATGAAATGTAGAGAAGCAATTGTT
CTTGAACAAGACTTCCAAGCTTTGATCAAACAAAGCTTATTTGATCCGAA
CTTCCCATCTACAGGAACTCCATCTTTACTCATTGCAGAAAATGAAATTT
TGTCACTATCGACTTACTCAAAATGCACTGATGGTATCTTTCATGTTATG
CCATTAATATTTGAAGTTTGTGGGGAAAATCAGCTATATCTAAGGTATAT
AATTTACTATCAGATTTTCTTTTGTAAATATTGTTCATGGTTTCAGCCCC
CTGGATTTCTTAAGGGCCCCTAGGCCAAGTGTGGAGTTTTGGCCTAAAAT
TTAGCAAATCTATGGGGTTACCTGTTCATTGGGGGTACATAGCTGCTCCT
GATAGAGGCTCTATCTAGGTGCTGTTTGTTTATCTGTATTTTCCAAATGG
AATACTTCAGAGTATAAGTTGAAATCTTTTGGCCCATACTTTCTCATTTT
TGTTTTTCTTTTCCAGTTTTTTTTTTTCATTGTGCTGCCATTCTTCATAG
CATAACAACAAAGCTTTTTTACAAAAAAATTCTCGGGTGAAGGGGAGCAC
CTAACCCAGGAGCAAATTCTTAAGGGTAGCTAAATCATTGCGGCACCTTA
TTTCGTTTGGTGTACCTAAAAAGTGGGCTGAAACCATCTTGTTGAATTAT
TGAAAGGAAAACTTTGAAAACTGACACTGAGCTTAAAGGTAACATAAAAT
ACTATTTTTTTCCAGATCGTTTGAAACAGGTGTTTATCAAGGGTTTATTC
AGAACAACTGGAAAACATTGTTTAATGACATTATCACAAAGTTCAAAATT
AAGCATTGCAATATTGTGTCGATTTATAATACTTGGGATGTTCTTGCTGC
TCAACATCGTCGAATCGAAACTAAAAATAGTAAGGAATTCTTTTTCATAG
TTTCAATGCAGGTCCTCTTTTTGGTTGAAGTTAATTTGGCTAATCTAAAT
TATTGTAATCTAAAAATGTTTATTGTATACCAATTTATAAACCAAAAAGT
GGTNTTGTAATCATACATGATCAATCTAAGTATCAATCAGATTCGTGCTC
CCTGGTCAGTAAAATGTGGTTCTATGCATTCATTTTCGGTATTTCTTATC
TGGTCTGTAAAATATTTAGGTACCCCACAACCTAGCCCAATTGGCTAGCC
CAATTGGCTACCCTGCTTTTTAGACCAACCCCCAAAAAGTAATTTTATGT
TTAATTTCTCTTTGTACAAGGCTCTACATCAGACAGAAATTTTGACCAAA
AGAAACAAAGCAATAAGTCATCCATTCAGAGAAATCTACCGGTTGCTTAT
TCCATATTCAAGCAGTCGTTTGGTGATAATGCGCCTGGATTTGTCTTCTT
TACTCGACGAATGACTAAATTTACGAAAAAAATTGCCCGAATAAGGAGTA
AGAGTTTGTTTTCCATCGTCACACTAAGAGCAACTAAAGATAGACAAGTA
ATAAGTAAAGTATGAAAGCAATAAAACATCAGTATTTCTTCTTGTTTCTT
GTTAAACGGGCCTTTAAGTGTCTTTTGGTATTATAAACATCCATTCGATT
TTCAAATTAAATTTATAAGAAAAACAAAAACTTCGTAACGTTTTTACAAT
TCTTTATTTATTTTATAGGTTTTACAAGATGGTTGGACTTGGTGACTCTA
GACAGGGCCGGCGAATCAATTTTGAAAGTGGATGGGCCAAATAGTAAGTG
TCTAAGGAGGCGCCACCATGGTTGGCGCCGACGGACCTTTCTTAGCAAAA
AAGTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATGGGGTAGCCAATTGGGCTAGGCTATGGGGTACCTCTTTTTGCCTAAAC
TTTTGAAATCTGAAACCTGTTTTCATGTGGAAATAACTATTACAACATCT
TGTTAATGCNTTGTGTCGATTTATAATACTTGGGATGTTCTTGCTGCTCA
ACATCGTCGAATCGAAACTAAAAATAGTAAGGAATTCTTTTTCATAGTTT
TAATGCAGGTCCTCTTTTTGGTTGAAGTTAATTTGGCTAATCTAAATTAT
GTTTATTGTATACCAATCTATAAACCAAAAAGTAATTTTATTTTTAATTT
CTCTTTGTACAAGGTTCTACATCAGACAGAAATTCAAAAATCTTTGACCA
AAAGACACAAAGCAACAAGTCATCCATTCAGAGAAATCTACCAGTTGCTT
ATTCCATATTCAAGCAGTCGTTCGGTGATAATGCGCCTGGATTTGTCTTC
TTTACTCGACGAATGGCTAAATTTACGAAGAAAAATTGCCCGAATACTGA
GTAAGAGTTTGTTTTCCATCGTCACACTAAGAGCAACTAAAGATAGACAA
GTAATAAGTAAAGTATGAAAGCAATAAAACATTGGTATTTCTTCTTGTTT
CTTGTTAAGTGTAAATGTTTTCTTGTTTTAAACGGGCCTTTAAGTGTCTT
TTGGTATTATAAACATCTATTCGATTTTCAAATTAAATTTATAAGAAAAA
CAAAAACTTCGTAACGTTTTCACAATTCTTTATTTATTTTATAGGTTTTA
CAAGATGGTTGGACTTGGTGACTCTAGACAGTGGAAGACAGAGTTACTAA
ATTATAAAATGAGTACTAGTATTACGTCAGAAAAATCTGCCATACTGCAA
TCGTTGCAGACTTTTGGTCAAATCGAAAATCTTCCAATTGAATGTCAATT
TCAAATTATTTCTTCCTTACCAAATTACCATAAGTGGGCGTACAGGAAAA
ACACTAGTGTTAAGAAGAAGCAGTACTTTACACCAAATGGTCTTTCACCA
AGAAATTTGATGATCCAATCCTTTGATGACGCACCTATGAAAAAAATTAT
CTTTCTCAAATTGAAAAACGCTTTCAATATTAAATATATTCCAAGTGGAA
GTTACAAAAAACGAACAAAGGTTTTTACAAATTATTTATTTAATTAAATT
TGCATTGCTCAGAGATTGAATTAACGGTCGGTTATCGGATAAAACCAAGA
AACAAAAATAAAAAACAACCTTATATTTTTCCATCTTTAGATAATAACCG
ACTAGTATTTCAGCTTTTTTTCTAGATCTCCTCTGGCTGAACCAAAATTG
ATATTAAATACGAATGATTTATTAAAATAACAGACAAGAAAAAAAAAGCC
CTATTTTGTTTCTTTGTGTTGTCTTATAAACTTTTTTTGAAAAATTTATT
ATCTAATATAAAATTTGATATATTTTCAGTCCCAAAATTCTGGAAAACGT
CGAGCAAATGTTGATCGAAGTTTTCTCCTCGAACATCTTGGCGTTACGGA
AGACGACTTTGCTCAAACATATACTGCCAGTTTACCATCAGACATGTATG
AAGAGTTCAAGCGAGCAATATATTTGGACAGCACACTCTTGTGGCGGGAA
AAAAGTCGCAGACTCCAAACTGTTGTGATGAACGATTACAATTCTGTTTC
TGGATTAATTAAAGTAAGATACGTTTTAACCTTGAAAATATTAAAGTCTA
TTCACGATAAGTGTACACTCTTTTTTCTTTTACCTATAACTTTTGAAAGA
ATTCTTCAATCTTTATAAATTTGGTATCGTTGGAGAGANNNNNNNNNNNN
NNATCGTTGGAGAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAATC
TTCAAAAAAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAATAATGAA
GATCTTGTAGAAAAGTGCTATAACTTTTACTTTCACTGGAGATATTCTTT
GATCTTTGGAGGTCATCACTGTGAAGAAATTTCACAAAAATATTTATTCA
ATACAAAGTTATAATGATACAAAGTTAATAAGTGAATAACCCCAAAAAAC
AGCAGAAAACAGCAGAAAACAGCGTTTTTAGACGTCAATTAGCTTATAAC
TTTGTTTGATATCTTTTGATTGAATGATTATTTTTGAGAAATTTTTTCAC
AGTGATGACGTTCTATGATCAAGGTCTCACTTCAGTGAAAATGATAGTTA
TAGCACTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTC
ATTTTCAGAATTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTCCAATGACACCA
AATTTATAAAGATTGAATAATTCCTTCAAAAGTTATAGGTAAAAGAAAAA
AGAGTGCACACTTATCGTGAATAGACTTTAATTATCATAATCTTTGATGT
ATATACAAAATATAATTGTTTTGATTAGACAATCCTGCGTGCTTTCTGAA
AATTGTTATTGTAGGTCATTTTTATAAATCTTATAGTTCAACGAATTCGT
GACCACAACTCGCAACGTTGAAGACAATCATACTAACATACAATGCGCGT
GTGAAACGTTTAAAGTGCTATCGACAACAATTGGTTCATCGGATTGGGAT
GGTGAAAGTTGTATGCACGCTCGCTTGCTTGAAAATATTATTGAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020388XLOC_020388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035036-exon-sc0001242-1575043694:52581..52757TCONS_00035036-exon-sc0001242-1575043694:52581..52757Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:52214..52475TCONS_00035036-exon-sc0001242-1575043694:52214..52475Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:51553..51692TCONS_00035036-exon-sc0001242-1575043694:51553..51692Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:49882..49905TCONS_00035036-exon-sc0001242-1575043694:49882..49905Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:49558..49744TCONS_00035036-exon-sc0001242-1575043694:49558..49744Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:48938..49313TCONS_00035036-exon-sc0001242-1575043694:48938..49313Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:48395..48628TCONS_00035036-exon-sc0001242-1575043694:48395..48628Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1575043694:47258..47421TCONS_00035036-exon-sc0001242-1575043694:47258..47421Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:52581..52757TCONS_00035036-exon-sc0001242-1510915933:52581..52757Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:52214..52475TCONS_00035036-exon-sc0001242-1510915933:52214..52475Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:51553..51692TCONS_00035036-exon-sc0001242-1510915933:51553..51692Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:49882..49905TCONS_00035036-exon-sc0001242-1510915933:49882..49905Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:49558..49744TCONS_00035036-exon-sc0001242-1510915933:49558..49744Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:48938..49313TCONS_00035036-exon-sc0001242-1510915933:48938..49313Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:48395..48628TCONS_00035036-exon-sc0001242-1510915933:48395..48628Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1510915933:47258..47421TCONS_00035036-exon-sc0001242-1510915933:47258..47421Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:52581..52757TCONS_00035036-exon-sc0001242-1491911889:52581..52757Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:52214..52475TCONS_00035036-exon-sc0001242-1491911889:52214..52475Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:51553..51692TCONS_00035036-exon-sc0001242-1491911889:51553..51692Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:49882..49905TCONS_00035036-exon-sc0001242-1491911889:49882..49905Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:49558..49744TCONS_00035036-exon-sc0001242-1491911889:49558..49744Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:48938..49313TCONS_00035036-exon-sc0001242-1491911889:48938..49313Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:48395..48628TCONS_00035036-exon-sc0001242-1491911889:48395..48628Clytia hemisphaericaexon
TCONS_00035036-exon-sc0001242-1491911889:47258..47421TCONS_00035036-exon-sc0001242-1491911889:47258..47421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001242supercontigsc0001242:47258..52757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.137625	0.10117	0	13.8245	10.2824	14.7333	18.9491	14.9057	9.74431	15.9259	20.0384	13.6168	13.1645	0	0	0.105183	0	0	0	1.55552	0.460822	0.481531	1.22248	23.8037	34.931	0.00145154	0.225187	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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