MSTRG.14943.5.p2 (mRNA) -

Overview
NameMSTRG.14943.5.p2
Unique NameMSTRG.14943.5.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000128_pilon:454326..460367+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14943.5.p2 ID=MSTRG.14943.5.p2|Name=MSTRG.14943.5.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6042bp|location=Sequence derived from alignment at sc0000128_pilon:454326..460367+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTTACAGGTAATAAATTCACCAACCCGGTAGCCAGAATATTTGCTga
ggttttcaaaacaaatgatacACTGGTCGAACTTGATTTGAGTTATAATG
AATTTCATGAGAATGGTTCACTTTACTTGGGTGCTGGACTGGTAAgttat
ttttctcttattttacAGACTAGATACTAcccatgatatgcaccattgca
atgtcttccacggacccaacagctgattggttgaaagtgacgtattgtaT
TGACTAATTttaccaatcagctgttgggtccggtaatgtcagaagacatt
gcgaTGATACATATCATGGATAATTTCTAGTTTGTAAAATAAGAGAAAGT
TTTTCATGTTTGTTAAGTTGCGTgttttccgccattatggaagcaaacgt
tcgatttgcGTATGGGATCGCCTCTACatattcgaacgtttgcttccatg
aTGGCTGAtaaagttacgtaacttaacaataCATGTAAAAGCTCTAGATA
TTATGTTGCTGTTTTTGACCCCATTTTCCGGCCCAAAGCTGAGGGGTCCG
TTTAATATTTTGTAGCCATTTTAATTTCTGTATTGGGAAGATTtcggaga
agaaaaaaaaacagcttaACATTAAAGttatagtttgatcaattatttTC
CTGAACTAACATGATATGAGATAAATTTATTTATACTAGCAGGCACGACT
CACAGAGTACGATTGTTAAAGTATTTCCTTTTATTCTCCATATATCAGAT
TGAGTAATCCCCTTTCTCTATTCAGGCACTAAACGAAAGTATAGAAGTTT
TGAGCTTGAAGTGGAATTCCATTCGTGGTAAAGGGGGTGTCGCAATTGCG
GCCGCCCTCAGTGTAAGTGAATTTGATTCAAATGATAATTTATTGTCTTA
AATAGCAGACCTCTACActctctacaaaaccgcagatAATCCAATCTTTA
GAAGGGCCACGAATTCGTTAGAGGATACCATAAGGGATTCTAAGTATTGT
GATCCAAGCTATAGGGATTTATTTTTCCAGGATTCTATAAAAATGGACCC
TGATTGGGGTGACATTCAGTGAACATTTTATTTGTATTTGATTCTTCTCT
TGTTTTATCCTAAGGAATATATCCGATGTTTCTTTCTAGAAAAATTCAAC
ATTGAGGAAACTCGATTTATCCTGGAACGGCTTGGCTTTCATTGGTTGTT
TGGCGATAGGGCgccatttgaagaaaaattcaacaCTTGAACACTTGGAT
ATCAGGTAACAAATGATTTGCGTTCCCCACTAGTCTACACGATAGACAGC
TCCAAGCTTTtactcaggtaagttatggcatatctcaaaaacctgaaaat
taccataatttttgaaggccattagccggcagaaaatgaggaaaccaatg
atttgcaacgaaggataccatgatgaagtttcgctGTAGGGGTGTTACCT
ATTGTTACGCCCTTATTTCGCGAAGACCGCAAAAACCAAGTGCTGCGTCA
gcaaacttgttttttaatatCTCCAGTTGGTAAGGTAGAAACATGAATTG
GACCCATGTTGAATATCATTTGGGgtcatttgcaaaaaaaaaattttcga
attttctatCGTCAGCAGAAACAGCAAATacgaattttgcaaaaaagtgc
tgatgtcagcaaaattcaaaatttttttttgcaatccttTAAATGATTCT
AATTCAGTCCAAATTCATGTTTCTATCTTTGGCCCAAGGAGTtctcaaaa
aacaagttttgctgacgtcagctttttttagttttgcGGGTTTTCGCGAA
ATAAGGGCGTAAAAATTAGGTACACCCCTACAGCGAACTCATCATGGATC
CTTCGTTGCAAACATTGGTAACTTTGATAGagttcgaatcaagttgcgat
taagtgcttttaaaatgatattcgtgagtggaatattatcaagtaaaaaa
attgagaaaaaaaggaaaatgaaaatgaaaaataaagagaaaaaatcaac
tttttgtaaaatgtggtataattaccatttcacaggagtgattttCAATC
TTAGGATCATCagtgtcaaaaatttcaaaatataaatattcattcaatca
aaagattcaaagaaagtttattgctggttgctctaaaatagtaaaaactg
gaaaaaacacaaaaacagccttttgtcgatcaccgcataaactttttttg
atctctttattgaataaatatttttaaaaattttttcacattgatgatga
tctaagaaaGAGCATCCGTGAAAATGGtaataccacatttctacaaaaag
ttgatttttttcttcttcatttttcattttcattttccttttttttctca
atttttttacttgataatgttccactcacgaatatctttttaacgagcac
aaaatcgcaacttaattcgaattctatcaaaagttacagccatttttttc
tccagctgcaaattatttcgagacagactttaattttcaggtttttgaga
catgccataacttacctgagtaGGCTTTACTCTTAACATAGTAAgggttt
tacgctcgaaacgaaggaagatatggcATGCCTTGTTCTCCACGTGTTGT
TTTCACACTTTTGTAATTAATGTTGGTGCATTTTCTTATGTTGGAAATCA
TGACTTACggctaaatcttcatgatgcacAGAGACTTAAAGAATTTTTTG
AGACTTTTCAATACTTTACCGTGGTTCGAACCTACATGTCTCCGATTATG
AAACATGTAGTCTATTGCACTGGGCTACGACGGTTGCTGATTTTCCGAAA
TTCAAGGTTATTTTATAGAGTGACATATATAGTATATACGGGTGAACAGA
CCtcacgagttaggctaactgttatgatcgcCATTCCTCCAGGAAGACCC
CACACACGGGTGCACCACCGGGGGGTGCACAGTCGTCTGGGTGCATGTTA
GGCATGAGCCACAGGCTGGCTACGCTACGATATTTTGCTCGCTACTTGCA
AGGCTGGTGAATCATCAAGATCTAGCCATAAGCATGACCAGATCTATTTT
TCAATTCATGCTTAAAGGGATAAGCAGGAGACTAAGATGGAGTTTACCAG
AAGGTTACGTGTTGAAATTCTCAAGCTTTTGTATGGGAAAATCAATGTAA
CGACTAAATACTTTGGATGTCAATTCTAAGAGTTGATACGATAGTTTGAG
GTAATTTGTAGTAGCAAAACCTTCAATTATTCAAAAcgaaaattctcaat
ttcagTAACAATCGAATAGGCTGTGATGGAGCAACAAAGCTTGTAGGCGC
TCTTTCAGTACATCCCGTTTTGGAGACGTTTAAAATCGGATTAAACCCGA
TCGGGGATGAAGgtgttcaaaaaatcttgaaagcAATGGAAAAGAACAGT
TCTATTTATTTATTGTCATTTGAGGTGAGTTGAACAGTTACCAAATTGAG
ACTCAACCTTTGATGTTTCAGTATGTTAAGAAGCAAAACACGATGGAAGA
tttttttCTACGCATGATTATCAgacgtagaaaaaaataatttctaaaat
AGGTCGTtgactttgatgaaaaattctgGAGTACAAATAAAATTTAGGTT
GAGCGACCTTAGTCTCTCTGGCATCAAAGGCTGTAAAATTCTAACAAGTG
TGAATTGTTCTTGACGTATTTACATAGTGGTCTTtgattatttcatctat
gaatttagaaaatcacaatttgtcaaaaaacactGTGGATGATCGAAAAC
CTCCAGAAATCTCGAGATATTGAAATTATCACAGGTGGGATGGGAGGATT
CTCAAAAGGAAAGGTAAAGGTCATTATTTCATTTATGATAATATGTCACT
TGGCTCACGGGCTGTATACcgtaaattaaactttttacgTGCAAATTACG
TTGTGCTTCTTCTATTCTAAAAAACGCACCCACCGCTTACTGCCCTTCTC
TCTCCCCTCATTTGCTTTATCGTCAGTCCCTTGATCTTACTGAGTGAGGT
GTTTTAGAGGTAATTTTAAGCATTTATCTAAATCATCAgaggaaaacaaa
tttttttttgggaatATGCATGTAGTTAATTTCTAAGGATGGGCGGGCGT
TGTCCGTATATCCTATAgactacaatcagtgacaaaatatgtAGCAATTT
CTTGAAccccccccTAATATCAGTGCTGATGTGAGCTTTTTCTGAACATG
GTAGCAGTCTTTCCACGCATCAACATTTATACTAGGGGGAGGGAATTCTT
GCCACAACATCTAGTCACAACATCTAGTCACAGATTGTAGATTAAGAAAG
CCAAAATGTGTcgttaatttctttaaaaatcacCCACAGTATTAAATATT
CTTCGATTCTTATTTCATTTTCCAGCCACCACCAGGGAATATGGAAGTTT
TAGTACAGTTTATACAGGACAATCGGATGAGGTTGACCGACATCTTTTTC
CGATTGGATAAAGACAGAAACGATAAAATAACAAAAGGCGAGTTTGTCAA
AGGTTTGATGAATGCAGGTCTGAAAATGGATAAGGTAAGACTCAAGCTTT
CGATATTGGTACATAAGTATACAGGGTGTGCTAGAAATAAGTTatcctct
ttgatttgatatcgCAGGTAGTAGaaaagaagtttttcaaaaactctTTC
GGAATTGTTCAGAAGAAAGCCTAACTTAAGTTTTGTTGtgttacttttta
attttacttcattggctTAAAAGCTGTGTCCAGAAAACAAAAACGTCAAT
TTAATGTCAAAAAGGCGGAAAACGAGGGTATCAatttatgaaaacaaaag
tttcttttaCCAAATTATCGCACCCGGTAACTAACCTGGTCTTCTTGTGG
TGCCAAAAAGAATAAAACTCTATTATCTATTATTCATCTAAGCATGATAA
GATTTCGGATTTGAGCTAAAAACATTAGAATCTTAAAATTCACCAGGTCT
TAAAAGCGAAATATTTTTATGGTATAGAACAAAGAAACGCAATTACAAGC
GTCAACCTCAGTGCAAACTACATATTCTCAAGAGCAGAGCGTGTAGTACG
GAATATACATTgcctttcatattttttttttcacttcagGGGCAGATAAC
AAATCTGATCGATCAACTTGACACAAACAATGATGGAGACATAGAGTTTA
GGTGAGAAGGGTTATTTTTAGATCATCTGCTCAAATCGTTCGTTCATATT
TCTCACGTCAATTcttactttttctgaaaaacacGTTACGTAATTCACTA
AAATGACCAATGGGAAAGGCTACTTTTCTAGGTACTCTATTTAGCCCGGG
CACAGGGTATATCTGAAGACTTTCTAACATCGCTTCtcaatttcgaaaag
aaaattacaTACTACAatggaatctccataactcgatcaCGCACATTGCt
aaagggaccataaaacttgttggagttaaggagacattcaagtGATAGAG
GTTCTAGCTATAGATTGtatatgtttctttttttttttttctttcagtga
gATTTTGAGTGGACAACAATTAGTGATGAACGAACGAAGATTTCAAAAGA
AGATAACAAAGAAAACCGAACAGATGGAAAAAGACAGTATACGTTTACCT
AAAATTCATGGCTTCTAACATACAAAAAACTGGACACAAGCATGCATAGA
CATTACATTGTGGCATATTGAAACATTTGAACTGTTTAAACATTAGCTCT
ATATAAACCAATAGAACTTTTTCTAAACCCTaggcatttttttttaattt
tcgaaagCTCCAGGCTTAAATGTGATGGATATCTGCAATACCATATTatt
aagaaaattaattttggcgagcagcagaaatctttgaaaatatgtaaact
GGCGAGGAACTTACATTGGCAGAGTAGCGAACTGGTAATTTTGTCGAGAA
CTGGCACCAATGTCGGTGTAACGAGATTCTATTTAGCCCAAAAATGAGTA
TTCTAGACAAACATTATGGAATTTTGAAtcgaaaaatatgtaaaaactca
cttttagtgacttttagaaaaattcgccaaatttggTGCACA

Coding sequence (CDS) from alignment at sc0000128_pilon:454326..460367+

>MSTRG.14943.5.p2 ID=MSTRG.14943.5.p2|Name=MSTRG.14943.5.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000128_pilon:454326..460367+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTTACAGGTAATAAATTCACCAACCCGGTAGCCAGAATATTTGCTga
ggttttcaaaacaaatgatacACTGGTCGAACTTGATTTGAGTTATAATG
AATTTCATGAGAATGGTTCACTTTACTTGGGTGCTGGACTGGCACTAAAC
GAAAGTATAGAAGTTTTGAGCTTGAAGTGGAATTCCATTCGTGGTAAAGG
GGGTGTCGCAATTGCGGCCGCCCTCAGTAAAAATTCAACATTGAGGAAAC
TCGATTTATCCTGGAACGGCTTGGCTTTCATTGGTTGTTTGGCGATAGGG
CgccatttgaagaaaaattcaacaCTTGAACACTTGGATATCAGaaaatc
acaatttgtcaaaaaacactGTGGATGAATTCTTACAGGTAATAAATTCA
CCAACCCGGTAGCCAGAATATTTGCTgaggttttcaaaacaaatgatacA
CTGGTCGAACTTGATTTGAGTTATAATGAATTTCATGAGAATGGTTCACT
TTACTTGGGTGCTGGACTGGCACTAAACGAAAGTATAGAAGTTTTGAGCT
TGAAGTGGAATTCCATTCGTGGTAAAGGGGGTGTCGCAATTGCGGCCGCC
CTCAGTAAAAATTCAACATTGAGGAAACTCGATTTATCCTGGAACGGCTT
GGCTTTCATTGGTTGTTTGGCGATAGGGCgccatttgaagaaaaattcaa
caCTTGAACACTTGGATATCAGaaaatcacaatttgtcaaaaaacactGT
GGATGAATTCTTACAGGTAATAAATTCACCAACCCGGTAGCCAGAATATT
TGCTgaggttttcaaaacaaatgatacACTGGTCGAACTTGATTTGAGTT
ATAATGAATTTCATGAGAATGGTTCACTTTACTTGGGTGCTGGACTGGCA
CTAAACGAAAGTATAGAAGTTTTGAGCTTGAAGTGGAATTCCATTCGTGG
TAAAGGGGGTGTCGCAATTGCGGCCGCCCTCAGTAAAAATTCAACATTGA
GGAAACTCGATTTATCCTGGAACGGCTTGGCTTTCATTGGTTGTTTGGCG
ATAGGGCgccatttgaagaaaaattcaacaCTTGAACACTTGGATATCAG
aaaatcacaatttgtcaaaaaacactGTGGATGAATTCTTACAGGTAATA
AATTCACCAACCCGGTAGCCAGAATATTTGCTgaggttttcaaaacaaat
gatacACTGGTCGAACTTGATTTGAGTTATAATGAATTTCATGAGAATGG
TTCACTTTACTTGGGTGCTGGACTGGCACTAAACGAAAGTATAGAAGTTT
TGAGCTTGAAGTGGAATTCCATTCGTGGTAAAGGGGGTGTCGCAATTGCG
GCCGCCCTCAGTAAAAATTCAACATTGAGGAAACTCGATTTATCCTGGAA
CGGCTTGGCTTTCATTGGTTGTTTGGCGATAGGGCgccatttgaagaaaa
attcaacaCTTGAACACTTGGATATCAGaaaatcacaatttgtcaaaaaa
cactGTGGATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14943MSTRG.14943Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14943.5.p2MSTRG.14943.5.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14943.5.p2.exon1MSTRG.14943.5.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon2MSTRG.14943.5.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon3MSTRG.14943.5.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon4MSTRG.14943.5.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon5MSTRG.14943.5.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon6MSTRG.14943.5.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14943.5.p2.exon7MSTRG.14943.5.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128_pilongenomesc0000128_pilon:454326..460367 +