XLOC_015553 (gene) - C. hemisphaerica

Overview
NameXLOC_015553
Unique NameXLOC_015553
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000635:170472..174533+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015553 ID=XLOC_015553|Name=XLOC_015553|organism=Clytia hemisphaerica|type=gene|length=4062bp|location=Sequence derived from alignment at sc0000635:170472..174533+ (Clytia hemisphaerica)
AAAACTCGTGATTCTCATGTTCTATGTTAAAAGAAGTGGTTTTGAAAGCT
TCAGAATAAACGAAGGGAGTTCATTTGGATGAGAATTGTGTAAGGAACAG
GTGAAAGGTaatctgaatcacagacctctatacAAGatatactttctctt
taaaaaacgttttcgttatagaggatgagcagaagctcTGGAAGATTCTC
TGGATTCCGGCAATCATGGGCTGGCGATAAGAAACTAAGGAGCTTTTAGT
ACATTGTAGAAGCAGttttaggaaaatttatttCCTCGTTGTTTCCgcat
tttttatgaatagtCTCCGATCAGTATCATTTGATTTGTATCCGTACTTA
CTAGAATTTTCGTTAAAACTTCCGAGAATTTTTCTTATTACTGACTGTCA
CTCTGATCAAAATGTTGAATCTTTTAATTTAGAATCTGTGAAaatcaaat
aagcaaaaatggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCT
TGCACTCTTCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATT
TGGAAAATTCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCT
GGAAACAAAAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACAT
ACATACAAGAAAGGATTGAACCATTTCTCAGACTTGGTAAGAATTTTTTC
TTAGTGTGgtacaaataaataaatagaaCTCTGAATCTCAATATTGTAGC
AGAAACCAATTAGATATCAATTTTTGCGCATCAATTTAATTTGACTGTTC
TGCATTATTACACAATGACGCTAGGCTAAGCAAATTAACAtgtgttttat
tttcattttcccttAGACACACGAAGAGTTCCGTCAACAAATGGGTGGAT
GTTACAAACTACCAGCCAATTACACAGCTGATAAATCAGAAGGCTCAACA
TTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGTTGACTGGAGACA
ACAAGGATACGTCACACCCATTAAGAACCAAGGACAATGTGGATCATGTT
GGTCTTTCTCCACTGTAAGTtgcatcccagctggcacacaacgttgtttt
aacgttcatttaacgttatatggacgttgtgaacgttaaacaaacgttga
aacaacgttgtgtggcaGCTGGGATAAGATGATCAAATACAGTCTCATGT
ACTATTATCATAATTCCTACATCCTTCCTGCCTGCAAAGGGTCAAATGTG
TTTCGGATAACGCTACTTGTGAAAGTGTCCGAGACAAAGACAtttagtca
ggtagaattaggtcATAAACTGCCAAAACCGGGAGAAAAATGGTTTAGAG
ATTGAAATTTTGTTCCAATTTATCGCTCtcagtaaaaatgctgacgtcat
caaaatcgtcattttttggactttagaggTCATATCTCGGGATTAcgtgg
tccaaatttcaaaagtgaccccattcTCTTTATCTACTCATCGAGAGGAA
TCTCCCTgtctagttatttttgacatttgaaaaccattaaaaatcagTTA
TCAAGGGTCCACCCTTGATTAATTGTAGACAAAAGTaccatgtccgccat
tatggatttgagggtgttcccatcttcGTGGGGgtggggttttttttttg
gtgattcctgacatAGTCCTGgacctttgtgcaaaatttcatctctacac
catttttgtctgGGTAGTTTTGCAATTCTACTTGACTAATTAGCAAATGC
GAGCCAATTGAAGGTTACCGTAAAAATTGAACTTTCTAGGCTTTTTGCTC
ATAAAATATGTAAAAGTTTTGAAGTCAGCAGAACTTGTTGTACAGCTCGA
GGGCATTCAAATTCAAACctatatacacccctgtctcacagctccggtgc
aactttttttctcattggggataaaaattcctattgaaatcccattgggg
ataaaaattcctttgttccaaggttaaaaaattcagtagcgatggttttg
aagtgcaatttttaaacattgaatttcgaatggggatgaaaaaaaagttg
atttccaagaggggctgaaattctaaagTCACatcgggacgaaatttttg
tcaatctttccagtggggctttgctcccagcgggtctgtgacacagtggT
ATCTAAATCCAAATTGCCAACTTTACACTTTCCATCTACAGACTGGTTCA
TTGGAGGGTCAAATATTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGA
ACAAAACTTGGTGGATTGCTCAAAATCATACGGAAACCAAGGATGCCATG
GTGGCTGGATGGACTGGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTC
ATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACTGGGCCTTCAAAT
ATATCAGAGATAACAAAGGAATTGACAGCGAACAAGGATACCCATACTAC
GCTAGAGTGAGTAAAATTTGTCTCTTCAAATCAGTGGATGAAAATCTGTA
CATACATTTACATTAGTATAGCCGAGagcgacccgaaggctctttttttc
tttagctgtctatctatctatctgaAGGAAGTGGAAGGTGCCACAACGTT
CCCGGGGTTTCTCCGCTTATCTTATCAATCTGGAcccaaaaaaacaatga
aatattcaaatatgTCAGGAATAAATCCAAGATtaataaaagaaatttct
tataaatcCAATATTCGTTTCTTATTTGACCATAGGAGCTTGGATACTGC
TACTATAACGCTCAATACAACACAGCTACTGACACAGGTTTCGTTGATAT
CCCATCTGGTGATGAAAACGCATTGAAACAAGCTGTCGCAACCATCGGTC
CTATCTCCGTAGCAATTGACGCTACAAAACCTTCATTTATGAGTTATCGC
AGTGGTGTTTACATCGAGCCAACCTGTGGCAACACACTGGCAAATCTTGA
TCATGCTGTCTTGGTTGTTGGTTATGGAACAGAAAATGGACAAGACTATT
GGTTGGTGAAAAATAGCTGGGACACTTATTGGGGAGATCAAGGATACATC
AAAATGGCACGAAACCGTAATGACCAGTGTGGTATCGCATTGAAAGCTAG
TTACCCATTAGTTTAGATAGATGTGACTAAACACTAAACTATAAATTTAC
TTAAGGAAATTCAATCCGAAAGTTCTTAAAGCCGTAGAACCTTCGAGATC
TAAGCACTCTTACCTAAAAGGAaaagaaacatttgaaaattatacattag
GCTATAGTTTTACAAGAAATATCACCAATTTTTATATTATTAAGCCAAAT
TTTCATTGAGCATTGTAAATAGAATTTTTGTACTAATTATTTAGAAAtaa
ggaaatcaaaaataatgagTATCAAATCCAGATTTCGAAAATGTCAATCA
CTACCCCTCCCCCTACTCAACGATGTAAAATAGataaataatagataacc
aactacctctagaaggcacttctcccaagagaacaaccattgttttccta
ttgaaatgagcattctattaaaaagctctgtgtgcagtgcgtgttatgct
tttagctagatttttgacacactttttgacatccactgaattgatagaaa
atttgaattgttatttactgcaaattttggattttttttcaaaaaataaa
ggtNAGAAGGTGCCACAACGTTCCCGGGGTTTCTCCGCTTATCTTATCAA
TCTGGACCCAAAAAACCaatgaaatattcaaatatgTCAGGAATAAATCC
AAGATtaataaaagaaatttcttataaatcCAATATTCTTCTTATTTGAC
CATAGGAGCTTGGATACTGCTACTATAACGCTCAATACAACACAGCTACT
GACACAGGTTTCGTTGATATCCCATCTGGTGATGNAtaactacggatcgg
cctgataccacttaatcttcatctggataaataaacgctcataaaatgct
gttatctgaataatatatgtgtgatttgaaatgcgatatctcacgtatga
aaagtgcatggaggttgcatgatacaaaataaacagatgaatgtttatag
aacaataatatc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00027577TCONS_00027577Clytia hemisphaericatranscript
TCONS_00027578TCONS_00027578Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00027577-proteinTCONS_00027577-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000635supercontigsc0000635:170472..174533 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
127.59	124.37	40.59	24.89	89.25	62.07	105.18	108.29	171.91	153.39	165.52	91.31	167.38	183.48	271.99	209.58	153.17	187.33	857.76	838.61	210.38	195.5	233.53	268.16	410.21	502.64	406.08	492.99	441.63	350.86