TCONS_00027577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027577
Unique NameTCONS_00027577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027577 ID=TCONS_00027577|Name=TCONS_00027577|organism=Clytia hemisphaerica|type=transcript|length=1791bp
AAAACTCGTGATTCTCATGTTCTATGTTAAAAGAAGTGGTTTTGAAAGCT
TCAGAATAAACGAAGGGAGTTCATTTGGATGAGAATTGTGTAAGGAACAG
GTGAAAGGTaatctgaatcacagacctctatacAAGatatactttctctt
taaaaaacgttttcgttatagaggatgagcagaagctcTGGAAGATTCTC
TGGATTCCGGCAATCATGGGCTGGCGATAAGAAACTAAGGAGCTTTTAGT
ACATTGTAGAAGCAGttttaggaaaatttatttCCTCGTTGTTTCCgcat
tttttatgaatagtCTCCGATCAGTATCATTTGATTTGTATCCGTACTTA
CTAGAATTTTCGTTAAAACTTCCGAGAATTTTTCTTATTACTGACTGTCA
CTCTGATCAAAATGTTGAATCTTTTAATTTAGAATCTGTGAAaatcaaat
aagcaaaaatggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCT
TGCACTCTTCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATT
TGGAAAATTCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCT
GGAAACAAAAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACAT
ACATACAAGAAAGGATTGAACCATTTCTCAGACTTGACACACGAAGAGTT
CCGTCAACAAATGGGTGGATGTTACAAACTACCAGCCAATTACACAGCTG
ATAAATCAGAAGGCTCAACATTCTTACCACCTTCAAATGTTGAAATCCCT
GACGAAGTTGACTGGAGACAACAAGGATACGTCACACCCATTAAGAACCA
AGGACAATGTGGATCATGTTGGTCTTTCTCCACTACTGGTTCATTGGAGG
GTCAAATATTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGAACAAAAC
TTGGTGGATTGCTCAAAATCATACGGAAACCAAGGATGCCATGGTGGCTG
GATGGACTGGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTCATACGGA
AACCAAGGATGCCATGGTGGCTGGATGGACTGGGCCTTCAAATATATCAG
AGATAACAAAGGAATTGACAGCGAACAAGGATACCCATACTACGCTAGAG
AGCTTGGATACTGCTACTATAACGCTCAATACAACACAGCTACTGACACA
GGTTTCGTTGATATCCCATCTGGTGATGAAAACGCATTGAAACAAGCTGT
CGCAACCATCGGTCCTATCTCCGTAGCAATTGACGCTACAAAACCTTCAT
TTATGAGTTATCGCAGTGGTGTTTACATCGAGCCAACCTGTGGCAACACA
CTGGCAAATCTTGATCATGCTGTCTTGGTTGTTGGTTATGGAACAGAAAA
TGGACAAGACTATTGGTTGGTGAAAAATAGCTGGGACACTTATTGGGGAG
ATCAAGGATACATCAAAATGGCACGAAACCGTAATGACCAGTGTGGTATC
GCATTGAAAGCTAGTTACCCATTAGTTTAGATAGATGTGACTAAACACTA
AACTATAAATTTACTTAAGGAAATTCAATCCGAAAGTTCTTAAAGCCGTA
GAACCTTCGAGATCTAAGCACTCTTACCTAAAAGGAaaagaaacatttga
aaattatacattagGCTATAGTTTTACAAGAAATATCACCAATTTTTATA
TTATTAAGCCAAATTTTCATTGAGCATTGTAAATAGAATTTTTGTACTAA
TTATTTAGAAAtaaggaaatcaaaaataatgagTATCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00027577-protein

>TCONS_00027577-protein ID=TCONS_00027577-protein|Name=TCONS_00027577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MEKLFLLALVIGVACTLPMEDPAWREFKLQFGKFYKDPNAEVARYAIWKQ
KLREIAEHNSNSKHTYKKGLNHFSDLTHEEFRQQMGGCYKLPANYTADKS
EGSTFLPPSNVEIPDEVDWRQQGYVTPIKNQGQCGSCWSFSTTGSLEGQI
FKKTGTLPSLSEQNLVDCSKSYGNQGCHGGWMDWAFKXLGGLLKVIRKPR
MPWWLDGLGLQIYQR
Run BLAST on NCBI

transcript from alignment at sc0000635:170472..173848+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027577 ID=TCONS_00027577|Name=TCONS_00027577|organism=Clytia hemisphaerica|type=transcript|length=3377bp|location=Sequence derived from alignment at sc0000635:170472..173848+ (Clytia hemisphaerica)
AAAACTCGTGATTCTCATGTTCTATGTTAAAAGAAGTGGTTTTGAAAGCT
TCAGAATAAACGAAGGGAGTTCATTTGGATGAGAATTGTGTAAGGAACAG
GTGAAAGGTaatctgaatcacagacctctatacAAGatatactttctctt
taaaaaacgttttcgttatagaggatgagcagaagctcTGGAAGATTCTC
TGGATTCCGGCAATCATGGGCTGGCGATAAGAAACTAAGGAGCTTTTAGT
ACATTGTAGAAGCAGttttaggaaaatttatttCCTCGTTGTTTCCgcat
tttttatgaatagtCTCCGATCAGTATCATTTGATTTGTATCCGTACTTA
CTAGAATTTTCGTTAAAACTTCCGAGAATTTTTCTTATTACTGACTGTCA
CTCTGATCAAAATGTTGAATCTTTTAATTTAGAATCTGTGAAaatcaaat
aagcaaaaatggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCT
TGCACTCTTCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATT
TGGAAAATTCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCT
GGAAACAAAAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACAT
ACATACAAGAAAGGATTGAACCATTTCTCAGACTTGGTAAGAATTTTTTC
TTAGTGTGgtacaaataaataaatagaaCTCTGAATCTCAATATTGTAGC
AGAAACCAATTAGATATCAATTTTTGCGCATCAATTTAATTTGACTGTTC
TGCATTATTACACAATGACGCTAGGCTAAGCAAATTAACAtgtgttttat
tttcattttcccttAGACACACGAAGAGTTCCGTCAACAAATGGGTGGAT
GTTACAAACTACCAGCCAATTACACAGCTGATAAATCAGAAGGCTCAACA
TTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGTTGACTGGAGACA
ACAAGGATACGTCACACCCATTAAGAACCAAGGACAATGTGGATCATGTT
GGTCTTTCTCCACTGTAAGTtgcatcccagctggcacacaacgttgtttt
aacgttcatttaacgttatatggacgttgtgaacgttaaacaaacgttga
aacaacgttgtgtggcaGCTGGGATAAGATGATCAAATACAGTCTCATGT
ACTATTATCATAATTCCTACATCCTTCCTGCCTGCAAAGGGTCAAATGTG
TTTCGGATAACGCTACTTGTGAAAGTGTCCGAGACAAAGACAtttagtca
ggtagaattaggtcATAAACTGCCAAAACCGGGAGAAAAATGGTTTAGAG
ATTGAAATTTTGTTCCAATTTATCGCTCtcagtaaaaatgctgacgtcat
caaaatcgtcattttttggactttagaggTCATATCTCGGGATTAcgtgg
tccaaatttcaaaagtgaccccattcTCTTTATCTACTCATCGAGAGGAA
TCTCCCTgtctagttatttttgacatttgaaaaccattaaaaatcagTTA
TCAAGGGTCCACCCTTGATTAATTGTAGACAAAAGTaccatgtccgccat
tatggatttgagggtgttcccatcttcGTGGGGgtggggttttttttttg
gtgattcctgacatAGTCCTGgacctttgtgcaaaatttcatctctacac
catttttgtctgGGTAGTTTTGCAATTCTACTTGACTAATTAGCAAATGC
GAGCCAATTGAAGGTTACCGTAAAAATTGAACTTTCTAGGCTTTTTGCTC
ATAAAATATGTAAAAGTTTTGAAGTCAGCAGAACTTGTTGTACAGCTCGA
GGGCATTCAAATTCAAACctatatacacccctgtctcacagctccggtgc
aactttttttctcattggggataaaaattcctattgaaatcccattgggg
ataaaaattcctttgttccaaggttaaaaaattcagtagcgatggttttg
aagtgcaatttttaaacattgaatttcgaatggggatgaaaaaaaagttg
atttccaagaggggctgaaattctaaagTCACatcgggacgaaatttttg
tcaatctttccagtggggctttgctcccagcgggtctgtgacacagtggT
ATCTAAATCCAAATTGCCAACTTTACACTTTCCATCTACAGACTGGTTCA
TTGGAGGGTCAAATATTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGA
ACAAAACTTGGTGGATTGCTCAAAATCATACGGAAACCAAGGATGCCATG
GTGGCTGGATGGACTGGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTC
ATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACTGGGCCTTCAAAT
ATATCAGAGATAACAAAGGAATTGACAGCGAACAAGGATACCCATACTAC
GCTAGAGTGAGTAAAATTTGTCTCTTCAAATCAGTGGATGAAAATCTGTA
CATACATTTACATTAGTATAGCCGAGagcgacccgaaggctctttttttc
tttagctgtctatctatctatctgaAGGAAGTGGAAGGTGCCACAACGTT
CCCGGGGTTTCTCCGCTTATCTTATCAATCTGGAcccaaaaaaacaatga
aatattcaaatatgTCAGGAATAAATCCAAGATtaataaaagaaatttct
tataaatcCAATATTCGTTTCTTATTTGACCATAGGAGCTTGGATACTGC
TACTATAACGCTCAATACAACACAGCTACTGACACAGGTTTCGTTGATAT
CCCATCTGGTGATGAAAACGCATTGAAACAAGCTGTCGCAACCATCGGTC
CTATCTCCGTAGCAATTGACGCTACAAAACCTTCATTTATGAGTTATCGC
AGTGGTGTTTACATCGAGCCAACCTGTGGCAACACACTGGCAAATCTTGA
TCATGCTGTCTTGGTTGTTGGTTATGGAACAGAAAATGGACAAGACTATT
GGTTGGTGAAAAATAGCTGGGACACTTATTGGGGAGATCAAGGATACATC
AAAATGGCACGAAACCGTAATGACCAGTGTGGTATCGCATTGAAAGCTAG
TTACCCATTAGTTTAGATAGATGTGACTAAACACTAAACTATAAATTTAC
TTAAGGAAATTCAATCCGAAAGTTCTTAAAGCCGTAGAACCTTCGAGATC
TAAGCACTCTTACCTAAAAGGAaaagaaacatttgaaaattatacattag
GCTATAGTTTTACAAGAAATATCACCAATTTTTATATTATTAAGCCAAAT
TTTCATTGAGCATTGTAAATAGAATTTTTGTACTAATTATTTAGAAAtaa
ggaaatcaaaaataatgagTATCAAAT

Coding sequence (CDS) from alignment at sc0000635:170472..173848+

>TCONS_00027577 ID=TCONS_00027577|Name=TCONS_00027577|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000635:170472..173848+ (Clytia hemisphaerica)
atggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCTTGCACTCT
TCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATTTGGAAAAT
TCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCTGGAAACAA
AAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACATACATACAA
GAAAGGATTGAACCATTTCTCAGACTTGACACACGAAGAGTTCCGTCAAC
AAATGGGTGGATGTTACAAACTACCAGCCAATTACACAGCTGATAAATCA
GAAGGCTCAACATTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGT
TGACTGGAGACAACAAGGATACGTCACACCCATTAAGAACCAAGGACAAT
GTGGATCATGTTGGTCTTTCTCCACTACTGGTTCATTGGAGGGTCAAATA
TTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGAACAAAACTTGGTGGA
TTGCTCAAAATCATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACT
GGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTCATACGGAAACCAAGG
ATGCCATGGTGGCTGGATGGACTGGGCCTTCAAATATATCAGAGATAAat
ggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCTTGCACTCTTC
CAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATTTGGAAAATTC
TACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCTGGAAACAAAA
GTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACATACATACAAGA
AAGGATTGAACCATTTCTCAGACTTGACACACGAAGAGTTCCGTCAACAA
ATGGGTGGATGTTACAAACTACCAGCCAATTACACAGCTGATAAATCAGA
AGGCTCAACATTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGTTG
ACTGGAGACAACAAGGATACGTCACACCCATTAAGAACCAAGGACAATGT
GGATCATGTTGGTCTTTCTCCACTACTGGTTCATTGGAGGGTCAAATATT
CAAAAAGACAGGAACTTTACCAAGCCTAAGTGAACAAAACTTGGTGGATT
GCTCAAAATCATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACTGG
GCCTTCAAATNACTTGGTGGATTGCTCAAAGTCATACGGAAACCAAGGAT
GCCATGGTGGCTGGATGGACTGGGCCTTCAAATATATCAGAGATAAatgg
AGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCTTGCACTCTTCCA
ATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATTTGGAAAATTCTA
CAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCTGGAAACAAAAGT
TGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACATACATACAAGAAA
GGATTGAACCATTTCTCAGACTTGACACACGAAGAGTTCCGTCAACAAAT
GGGTGGATGTTACAAACTACCAGCCAATTACACAGCTGATAAATCAGAAG
GCTCAACATTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGTTGAC
TGGAGACAACAAGGATACGTCACACCCATTAAGAACCAAGGACAATGTGG
ATCATGTTGGTCTTTCTCCACTACTGGTTCATTGGAGGGTCAAATATTCA
AAAAGACAGGAACTTTACCAAGCCTAAGTGAACAAAACTTGGTGGATTGC
TCAAAATCATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACTGGGC
CTTCAAATNACTTGGTGGATTGCTCAAAGTCATACGGAAACCAAGGATGC
CATGGTGGCTGGATGGACTGGGCCTTCAAATATATCAGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015553XLOC_015553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027577-proteinTCONS_00027577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027577-exon-sc0000635-1491911889:170472..171157TCONS_00027577-exon-sc0000635-1491911889:170472..171157Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1510915933:170472..171157TCONS_00027577-exon-sc0000635-1510915933:170472..171157Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1575043694:170472..171157TCONS_00027577-exon-sc0000635-1575043694:170472..171157Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1491911889:171338..171535TCONS_00027577-exon-sc0000635-1491911889:171338..171535Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1510915933:171338..171535TCONS_00027577-exon-sc0000635-1510915933:171338..171535Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1575043694:171338..171535TCONS_00027577-exon-sc0000635-1575043694:171338..171535Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1491911889:172663..172927TCONS_00027577-exon-sc0000635-1491911889:172663..172927Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1510915933:172663..172927TCONS_00027577-exon-sc0000635-1510915933:172663..172927Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1575043694:172663..172927TCONS_00027577-exon-sc0000635-1575043694:172663..172927Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1491911889:173207..173848TCONS_00027577-exon-sc0000635-1491911889:173207..173848Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1510915933:173207..173848TCONS_00027577-exon-sc0000635-1510915933:173207..173848Clytia hemisphaericaexon
TCONS_00027577-exon-sc0000635-1575043694:173207..173848TCONS_00027577-exon-sc0000635-1575043694:173207..173848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000635supercontigsc0000635:170472..173848 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
126.793	123.452	39.0801	23.8039	88.4397	61.9441	105.041	107.524	170.674	152.182	165.075	90.241	166.251	182.207	271.085	208.704	152.629	186.403	856.012	835.322	209.183	193.579	233.283	267.451	409.98	502.04	403.806	490.373	439.631	349.432
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
IPR013201Prot_inhib_I29
IPR000169Pept_cys_AS
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00027577 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.075e-56
Identity = 99/172 (57.56%), Postives = 123/172 (71.51%), Query Frame = 1 
Query: 1024 LVDCSKSYGNQGCHGGWMDWAFKYIRDNKGIDSEQGYPYYARELGYCYYNAQYNTATDTGFVDIPSGDENALKQAVATIGPISVAIDATKPSFMSYRSGVYIEPTCGNTLANLDHAVLVVGYGTENGQD----YWLVKNSWDTYWGDQGYIKMARNRNDQCGIALKASYPLV 1527
            LVDCS   GN+GC+GG MD+AF+Y++DN G+DSE+ YPY A E   C YN +Y+ A DTGFVDIP   E AL +AVAT+GPISVAIDA   SF+ Y+ G+Y EP C +   ++DH VLVVGYG E+ +     YWLVKNSW   WG  GY+KMA++R + CGIA  ASYP V
Sbjct:  166 LVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE--DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333

HSP 2 Score: 165.622 bits (418), Expect = 1.516e-45
Identity = 92/199 (46.23%), Postives = 121/199 (60.80%), Query Frame = 3 
Query:  468 LFLLALVIGVA-CTLPME---DPAWREFKLQFGKFYKDPNAEVARYAIWKQKLREIAEHNSN---SKHTYKKGLNHFSDLTHEEFRQQMGGCYKLPANYTADKSEGSTFLPPSNVEIPDEVDWRQQGYVTPIKNQGQCGSCWSFSTTGSLEGQIFKKTGTLPSLSEQNLVDCSKSYGNQGCHGGWMDWAFKXL---GGL 1034
            L L A  +G+A  TL  +   +  W ++K    + Y   N E  R A+W++ ++ I  HN      KH++   +N F D+T EEFRQ M G             +G  F  P   E P  VDWR++GYVTP+KNQGQCGSCW+FS TG+LEGQ+F+KTG L SLSEQNLVDCS   GN+GC+GG MD+AF+ +   GGL
Sbjct:    5 LILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR------KGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGL 196
The following BLAST results are available for this feature:
BLAST of TCONS_00027577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL12.075e-5657.56Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2[more]
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