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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027578 ID=TCONS_00027578|Name=TCONS_00027578|organism=Clytia hemisphaerica|type=transcript|length=1406bp
AAAACTCGTGATTCTCATGTTCTATGTTAAAAGAAGTGGTTTTGAAAGCT
TCAGAATAAACGAAGGGAGTTCATTTGGATGAGAATTGTGTAAGGAACAG
GTGAAAGGTaatctgaatcacagacctctatacAAGatatactttctctt
taaaaaacgttttcgttatagaggatgagcagaagctcTGGAAGATTCTC
TGGATTCCGGCAATCATGGGCTGGCGATAAGAAACTAAGGAGCTTTTAGT
ACATTGTAGAAGCAGttttaggaaaatttatttCCTCGTTGTTTCCgcat
tttttatgaatagtCTCCGATCAGTATCATTTGATTTGTATCCGTACTTA
CTAGAATTTTCGTTAAAACTTCCGAGAATTTTTCTTATTACTGACTGTCA
CTCTGATCAAAATGTTGAATCTTTTAATTTAGAATCTGTGAAaatcaaat
aagcaaaaatggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCT
TGCACTCTTCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATT
TGGAAAATTCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCT
GGAAACAAAAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACAT
ACATACAAGAAAGGATTGAACCATTTCTCAGACTTGACACACGAAGAGTT
CCGTCAACAAATGGGTGGATGTTACAAACTACCAGCCAATTACACAGCTG
ATAAATCAGAAGGCTCAACATTCTTACCACCTTCAAATGTTGAAATCCCT
GACGAAGTTGACTGGAGACAACAAGGATACGTCACACCCATTAAGAACCA
AGGACAATGTGGATCATGTTGGTCTTTCTCCACTACTGGTTCATTGGAGG
GTCAAATATTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGAACAAAAC
TTGGTGGATTGCTCAAAATCATACGGAAACCAAGGATGCCATGGTGGCTG
GATGGACTGGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTCATACGGA
AACCAAGGATGCCATGGTGGCTGGATGGACTGGGCCTTCAAATATATCAG
AGATAACAAAGGAATTGACAGCGAACAAGGATACCCATACTACGCTAGAG
AGCTTGGATACTGCTACTATAACGCTCAATACAACACAGCTACTGACACA
GGTTTCGTTGATATCCCATCTGGTGATGNAtaactacggatcggcctgat
accacttaatcttcatctggataaataaacgctcataaaatgctgttatc
tgaataatatatgtgtgatttgaaatgcgatatctcacgtatgaaaagtg
catggaggttgcatgatacaaaataaacagatgaatgtttatagaacaat
aatatc Run BLAST on NCBI transcript from alignment at sc0000635:170472..174533+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027578 ID=TCONS_00027578|Name=TCONS_00027578|organism=Clytia hemisphaerica|type=transcript|length=4062bp|location=Sequence derived from alignment at sc0000635:170472..174533+ (Clytia hemisphaerica)
AAAACTCGTGATTCTCATGTTCTATGTTAAAAGAAGTGGTTTTGAAAGCT
TCAGAATAAACGAAGGGAGTTCATTTGGATGAGAATTGTGTAAGGAACAG
GTGAAAGGTaatctgaatcacagacctctatacAAGatatactttctctt
taaaaaacgttttcgttatagaggatgagcagaagctcTGGAAGATTCTC
TGGATTCCGGCAATCATGGGCTGGCGATAAGAAACTAAGGAGCTTTTAGT
ACATTGTAGAAGCAGttttaggaaaatttatttCCTCGTTGTTTCCgcat
tttttatgaatagtCTCCGATCAGTATCATTTGATTTGTATCCGTACTTA
CTAGAATTTTCGTTAAAACTTCCGAGAATTTTTCTTATTACTGACTGTCA
CTCTGATCAAAATGTTGAATCTTTTAATTTAGAATCTGTGAAaatcaaat
aagcaaaaatggAGAAACTATTCTTATTAGCGTTAGTTATCGGAGTAGCT
TGCACTCTTCCAATGGAAGACCCAGCATGGAGAGAATTCAAATTACAATT
TGGAAAATTCTACAAAGATCCAAATGCTGAGGTTGCGCGATATGCTATCT
GGAAACAAAAGTTGCGAGAAATTGCTGAGCACAATTCCAACTCTAAACAT
ACATACAAGAAAGGATTGAACCATTTCTCAGACTTGGTAAGAATTTTTTC
TTAGTGTGgtacaaataaataaatagaaCTCTGAATCTCAATATTGTAGC
AGAAACCAATTAGATATCAATTTTTGCGCATCAATTTAATTTGACTGTTC
TGCATTATTACACAATGACGCTAGGCTAAGCAAATTAACAtgtgttttat
tttcattttcccttAGACACACGAAGAGTTCCGTCAACAAATGGGTGGAT
GTTACAAACTACCAGCCAATTACACAGCTGATAAATCAGAAGGCTCAACA
TTCTTACCACCTTCAAATGTTGAAATCCCTGACGAAGTTGACTGGAGACA
ACAAGGATACGTCACACCCATTAAGAACCAAGGACAATGTGGATCATGTT
GGTCTTTCTCCACTGTAAGTtgcatcccagctggcacacaacgttgtttt
aacgttcatttaacgttatatggacgttgtgaacgttaaacaaacgttga
aacaacgttgtgtggcaGCTGGGATAAGATGATCAAATACAGTCTCATGT
ACTATTATCATAATTCCTACATCCTTCCTGCCTGCAAAGGGTCAAATGTG
TTTCGGATAACGCTACTTGTGAAAGTGTCCGAGACAAAGACAtttagtca
ggtagaattaggtcATAAACTGCCAAAACCGGGAGAAAAATGGTTTAGAG
ATTGAAATTTTGTTCCAATTTATCGCTCtcagtaaaaatgctgacgtcat
caaaatcgtcattttttggactttagaggTCATATCTCGGGATTAcgtgg
tccaaatttcaaaagtgaccccattcTCTTTATCTACTCATCGAGAGGAA
TCTCCCTgtctagttatttttgacatttgaaaaccattaaaaatcagTTA
TCAAGGGTCCACCCTTGATTAATTGTAGACAAAAGTaccatgtccgccat
tatggatttgagggtgttcccatcttcGTGGGGgtggggttttttttttg
gtgattcctgacatAGTCCTGgacctttgtgcaaaatttcatctctacac
catttttgtctgGGTAGTTTTGCAATTCTACTTGACTAATTAGCAAATGC
GAGCCAATTGAAGGTTACCGTAAAAATTGAACTTTCTAGGCTTTTTGCTC
ATAAAATATGTAAAAGTTTTGAAGTCAGCAGAACTTGTTGTACAGCTCGA
GGGCATTCAAATTCAAACctatatacacccctgtctcacagctccggtgc
aactttttttctcattggggataaaaattcctattgaaatcccattgggg
ataaaaattcctttgttccaaggttaaaaaattcagtagcgatggttttg
aagtgcaatttttaaacattgaatttcgaatggggatgaaaaaaaagttg
atttccaagaggggctgaaattctaaagTCACatcgggacgaaatttttg
tcaatctttccagtggggctttgctcccagcgggtctgtgacacagtggT
ATCTAAATCCAAATTGCCAACTTTACACTTTCCATCTACAGACTGGTTCA
TTGGAGGGTCAAATATTCAAAAAGACAGGAACTTTACCAAGCCTAAGTGA
ACAAAACTTGGTGGATTGCTCAAAATCATACGGAAACCAAGGATGCCATG
GTGGCTGGATGGACTGGGCCTTCAAATNACTTGGTGGATTGCTCAAAGTC
ATACGGAAACCAAGGATGCCATGGTGGCTGGATGGACTGGGCCTTCAAAT
ATATCAGAGATAACAAAGGAATTGACAGCGAACAAGGATACCCATACTAC
GCTAGAGTGAGTAAAATTTGTCTCTTCAAATCAGTGGATGAAAATCTGTA
CATACATTTACATTAGTATAGCCGAGagcgacccgaaggctctttttttc
tttagctgtctatctatctatctgaAGGAAGTGGAAGGTGCCACAACGTT
CCCGGGGTTTCTCCGCTTATCTTATCAATCTGGAcccaaaaaaacaatga
aatattcaaatatgTCAGGAATAAATCCAAGATtaataaaagaaatttct
tataaatcCAATATTCGTTTCTTATTTGACCATAGGAGCTTGGATACTGC
TACTATAACGCTCAATACAACACAGCTACTGACACAGGTTTCGTTGATAT
CCCATCTGGTGATGAAAACGCATTGAAACAAGCTGTCGCAACCATCGGTC
CTATCTCCGTAGCAATTGACGCTACAAAACCTTCATTTATGAGTTATCGC
AGTGGTGTTTACATCGAGCCAACCTGTGGCAACACACTGGCAAATCTTGA
TCATGCTGTCTTGGTTGTTGGTTATGGAACAGAAAATGGACAAGACTATT
GGTTGGTGAAAAATAGCTGGGACACTTATTGGGGAGATCAAGGATACATC
AAAATGGCACGAAACCGTAATGACCAGTGTGGTATCGCATTGAAAGCTAG
TTACCCATTAGTTTAGATAGATGTGACTAAACACTAAACTATAAATTTAC
TTAAGGAAATTCAATCCGAAAGTTCTTAAAGCCGTAGAACCTTCGAGATC
TAAGCACTCTTACCTAAAAGGAaaagaaacatttgaaaattatacattag
GCTATAGTTTTACAAGAAATATCACCAATTTTTATATTATTAAGCCAAAT
TTTCATTGAGCATTGTAAATAGAATTTTTGTACTAATTATTTAGAAAtaa
ggaaatcaaaaataatgagTATCAAATCCAGATTTCGAAAATGTCAATCA
CTACCCCTCCCCCTACTCAACGATGTAAAATAGataaataatagataacc
aactacctctagaaggcacttctcccaagagaacaaccattgttttccta
ttgaaatgagcattctattaaaaagctctgtgtgcagtgcgtgttatgct
tttagctagatttttgacacactttttgacatccactgaattgatagaaa
atttgaattgttatttactgcaaattttggattttttttcaaaaaataaa
ggtNAGAAGGTGCCACAACGTTCCCGGGGTTTCTCCGCTTATCTTATCAA
TCTGGACCCAAAAAACCaatgaaatattcaaatatgTCAGGAATAAATCC
AAGATtaataaaagaaatttcttataaatcCAATATTCTTCTTATTTGAC
CATAGGAGCTTGGATACTGCTACTATAACGCTCAATACAACACAGCTACT
GACACAGGTTTCGTTGATATCCCATCTGGTGATGNAtaactacggatcgg
cctgataccacttaatcttcatctggataaataaacgctcataaaatgct
gttatctgaataatatatgtgtgatttgaaatgcgatatctcacgtatga
aaagtgcatggaggttgcatgatacaaaataaacagatgaatgtttatag
aacaataatatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027578-exon-sc0000635-1491911889:170472..171157 | TCONS_00027578-exon-sc0000635-1491911889:170472..171157 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1510915933:170472..171157 | TCONS_00027578-exon-sc0000635-1510915933:170472..171157 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1575043694:170472..171157 | TCONS_00027578-exon-sc0000635-1575043694:170472..171157 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1491911889:171338..171535 | TCONS_00027578-exon-sc0000635-1491911889:171338..171535 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1510915933:171338..171535 | TCONS_00027578-exon-sc0000635-1510915933:171338..171535 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1575043694:171338..171535 | TCONS_00027578-exon-sc0000635-1575043694:171338..171535 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1491911889:172663..172927 | TCONS_00027578-exon-sc0000635-1491911889:172663..172927 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1510915933:172663..172927 | TCONS_00027578-exon-sc0000635-1510915933:172663..172927 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1575043694:172663..172927 | TCONS_00027578-exon-sc0000635-1575043694:172663..172927 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1491911889:174277..174533 | TCONS_00027578-exon-sc0000635-1491911889:174277..174533 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1510915933:174277..174533 | TCONS_00027578-exon-sc0000635-1510915933:174277..174533 | Clytia hemisphaerica | exon |
| TCONS_00027578-exon-sc0000635-1575043694:174277..174533 | TCONS_00027578-exon-sc0000635-1575043694:174277..174533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:170472..174533 + |
Blast
BLAST of TCONS_00027578 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 4.598e-48 Identity = 92/199 (46.23%), Postives = 125/199 (62.81%), Query Frame = 3
Query: 468 LFLLALVIGVACTLPM----EDPAWREFKLQFGKFYKDPNAEVARYAIWKQKLREIAEHN---SNSKHTYKKGLNHFSDLTHEEFRQQMGGCYKLPANYTADKSEGSTFLPPSNVEIPDEVDWRQQGYVTPIKNQGQCGSCWSFSTTGSLEGQIFKKTGTLPSLSEQNLVDCSKSYGNQGCHGGWMDWAFKXL---GGL 1034
L L A +G+A +P D W ++K + Y N E R A+W++ ++ I HN S KH + +N F D+T+EEFRQ MG C++ +G F P +++P VDWR++GYVTP+KNQ QCGSCW+FS TG+LEGQ+F+KTG L SLSEQNLVDCS+ GNQGC+GG+M AF+ + GGL
Sbjct: 5 LVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLY-GANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMG-CFR-----NQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGL 196
The following BLAST results are available for this feature:
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