XLOC_009430 (gene) - C. hemisphaerica

Overview
NameXLOC_009430
Unique NameXLOC_009430
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000253:18724..23790+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009430 ID=XLOC_009430|Name=XLOC_009430|organism=Clytia hemisphaerica|type=gene|length=5067bp|location=Sequence derived from alignment at sc0000253:18724..23790+ (Clytia hemisphaerica)
TCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCACCGCCCA CTGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACCGCAGTCC TCTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTAACATTTG TTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACATTTGTTTT GGTGAGTGAGTGATGGGTAACATCAGTTTTAGTATATTATTATGGGgcga atgttttttttccagggTTTATGCCGGCCGACATAACTGGCACTGCCCCC CCCCTATAGAGAATGAAGTAATATTTCGTGGCCCTTATTGATGATTTTTC ACTAGAAGATTAGATTTCTTTAATGTTATTACTTAGGAAAACATCGTCGT TGCAGCCTGATAACGGTTTTCCCCGACTTTGAATCTTGCGTCATATTAAT GATATTAATCGGAGTATGTATGtcatacacgggtttcgaattaaactACG CACgcaaaaaaatatcaagtatCAAATGTATTTATAAGATGTTGATAGAT TCTAAAAatgcttttctatttttatttaaattcaataaaaTAAATAAGAC TAAATACAATTGCCGTATTATTTTTTAAGTGTTTGGCTGGTATAGTGAAC catacagtatttcaaaatggaaaaatgagctaaaattgcttgtcGTATGG CTactttctgttttgtttacttgattttcTTTCGTGCAaattacatggga tcaaagcaaAAGCTACGCAAAAATCTTAGTTCGAAATCCGTGTTTTTTGA ATACCAACTGCTTCATTTTTAAtaccttttattttttttctagttGGCCA TGCTTGCATCAAGTAAGTGCTAAAGATATTGTTTTCTTAAAGTGCCTTAT ATGATATTTATTGAGGATGCCGCTAAAGAGAAGTCTTTCTTACCTCAATG ACatccccttttcacagacccgttaggattttttcagccagcaGGGGTAG AAATAACGGAcaaaaactcgatggggattgattcccatgtttttttatgg cttgggatttgggttccattgttttcaattcAGGGAAACGGAAAAATAGC ACAAGATTTTGCTGGGTGGATTTCTTTACTTGATTAACTTCAGTGGGTAG AAAAGTTTGAttacgatattttggccaaatttttccagtgggtggGAACT CCCAACGGGTCTGTGAAAAAGGGTTATGCATTTTCTGAATGAAACGACGT TTTAGTTTTTTATATCGGTCACGGACACTTTTCACGCATTACCAAATAAT CGCGTTTTCACTTTCTAGTGGATAGAGACTAGGCCTACCAGACCTGTTTG TCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTCCCGTATACG GAAAAGACAATCCAGACCGGAAAGACCCAAGGTATTGCTCTCGTTTCATT TTTTTAGTTCCCTAGACATTTTGGAGAATTTTCCTTAAAATCTTCTAAAC TGATATGAGTGGCTTTCTTTGTAaagtaacactttttttcaatttatttt ttttacatatttcaccgcaataataattttatttcttctcTTTAACAAAA GTGCTCGACGAATGCTCAGAGCTCGTTACgttaaaatgaataaaaataga CTTTGTGTAATTTTAGGAACTTGAAGTTTCATGCCGTCCGTATGAACGAC AATGATTAACCAAAAAACACATACTGTCAACTCTTTCTTATTCGAGTCTC TACTATTTGGATTtttctgtaattcgaatctttctctaattcgaataaaa ctTTTGGACCGAAGGAGTATCAACTGAATTCCCCCACTGTGCCTCTTTTT GTAACGCCTACCATTTTCAGCGCGCGCTCGCATAATAATAAATCAGTAGT ATTTTTGTGTACGCGCTTTTCCATCGTATTTCAGTCTCCGAAATATTATA CCAAAATGTCTTAGGTAGGGAAAACAGGCGGGTTTCTTATAACGTTCAAA AGTTACGAACGACTATTACTGGATGAAGctattttaatttctttcttcta ATTTTTTATAGAGAGAAAGAGATGCCACCAAGACCTCAAGCTCAACGACC AGAACCTGAAACCAACTATAACGTAAGAAATAAAACATAAGTATTGTGAC AGGAATGTGTTATCTCGGATTTTGGAGTTTCTACTTTTAGAGTAATAAAC TTAAATTCTCCTTACAATAATTGAATCACTATATTCTATCTACCGGATAT TGTTAGCTTACATATGAAACTATTTGGCTTGCTCTCATTTTTCTGCTGGG AAGAAATAACGTAACTTAAATTATTTGGTGTATAAAACTTCGAGGCTCGG AATTTCCGAGTTAGAAAAATTGAGTTAGAAAACCGAGTTAGCAAAAAAAA AACGAGTCATGACGTCATTAAACGAAAATTTTGACGGCACATCCAAAATT TTTTGCTCGATTTTTGATTTCCAAATAAAATTTTCGAGTTAGCTAAGTCG ATTTTTTTTGTCAAATTAAAATCTTTCGAGATTTTCGAGTTAGCTAACTC GATTTTGTTTATCAAATTAAAATTTTCGAGTTAGCTTACTCGATTTTTTT TCAACAAATTAAAATTTGTGCTAGAAAGAGATAAAGTTCCAGTTTACTCG AGCGGTCAGCTTTCTTGTTTGACATTGATATATCCGGTTCTGTAGGTTCG TACCTATCATAAGTCATTTGATTTGCTTTTCAACCAATAAAAATATATCA GGGCGGAGCAGCGTCAGCACTATGGTTTAACTTGACTGAAAATCTTTTCA AATTTACTGAACACACACACACAATTTATCTTTGAATTGAAACGCTTGTT ACCGACTCACTAGGAGTATACTAGAGTATAATAGAGTTGTCAAAACATCG GACGTACCTGGAGGTACATCAAAATACCAAAGATCCAGAATTTTCCTATC ATAATattcttcaatttctttacaGATGTTCAACAATAGCTTCTTTGGTG GCTTCGGTCCCGGCTTCGGTATGCCTGGCCAGAATAACGGTGGATTACAA TTCTCATTTGGAATTGGTGCTTTCCCCTTCACCTTCTTGTCATGGGTAAA TTGTTGTCTTTGATTTTCTGGAAGCACTACTAAGTTTACTTAGGAAAgat ttaaaagatattttgacataatttaaaattttaggCACGATTTTCAAACG GAAATGGTGTTCTTTGACCCGTATCCAGGGAGATATAGTGGCACTCTTCC CTACCTTAGGTAGATAGTTATCTAAAGAGAAACCTTCAGGTCGCGTCTGA CTGTGATTGAAGACTTAGTGGGACCGCCCTTCGACAAAGGACGTGAAAAT CAAGTTCTTTTATGCaaacacttttattttttattcttgtttAAGCAATT CGGTGCtggcaacaacaacaacaataaccAAAGAAGTAAGCTTCTATTAA AACTATtggtaaaaatatatatacctTCAAACGTTTATGAAAGTAGATTT GAATTTCCGCAATTACATCGGAGAACGCAAGGGACGTTTTAAATCTTAAG TACTTCCATCTAATattactctcaggtacctaataaacCAACGTCCCTCG CtagttaatttttcgaaaatttctacaaaggacattcttattccgaCCCC TctccccgcttattgatttttgggaaatattttttgaaagttctccAAAC CCCCTGTTTATTAGATATCCGAGAGTAATTAGTGCGGTCATACCAGAAAT GGTAGAAAACACCTTCGTTGATGTGCTACACATAATTGTTAAACAATATT AGTTCGTTCAATTCAGTTCTAGCAAATCgtgtgtttttttctgaaagttg TATCATGCTCCTTCAATTGGCAGAGCTCCAATCTTGAAGCAACACTTAAC TTTCGACATAATTATATTCCTTCGATAAATAACTTCTATTGCTTTTCTTC CAGATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAATTCTTATCA AGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttgattttggc ttaaaacggcaCTGCTTTTTTTGGAGATGGAAATTCTTATTTGAATTCTG CTAGAAGCTTTTTTGCCAGTTTTTGGAGCCACCACGATTGGTCTCCATtg ggaaaaattgaaagaacCCCTACAAATGTTGCTCGAACAGCCTCATTGCT TGAGGGGTGGATGGAACAGCTGATGATGAAAATAGTCGCTTCTTGTGATT TGTTATGGAGGTTGTATACATATTTCCTGTAGAAACAGCGTTTTGTATCT CTTCTACTAATGTTATTGATAATACTTCCTTCTTGGGCCAATGGTGCACA AATTTCACTGTTTTAACATTCTAGATAATGatcagtgaaaaaaataaacg aaTTACAGAATCGAGTCGGAGATGAGAAATTGTTGACAATGAACATTATA TGGACATTTTTATGAGAAAGCCTCATTTGTGTGTTTTCATATCAGATATC AATTTCAGTTTCCCAACTTTAACTATTATATAACTAACCTAGCTGTAACC AGCCTGAAAACCTAGCAATGTTAGGTTatccagaaaaattcttaaTCTTT CTTATAAGTAATTTGATTGGTGAATACAACAAAGTTATGTTAAACAAAGT GCAGGCTTTATGCGTTCGTTTTACACTGATTGGTTCCCAAATCTCAAGAA TGCAATATTTTTATACGTATAATAACTTCATTTTagaattcttaaaattt ttcaaatttgaaccNCACTGATTGGTTCCCAAATCTCAAGAATGCAATAT TTTTATACGTATAATAACTTCATTTTagaattcttaaaatttttcaaatt tgaaccTTCATGATTCATATaaaataattcttataaaaatctgtACACAT AAACTGGGTTTCTTAAAATCTGAACTAAGTGAGGTTGCAGTAGAAAGAAA ACTTTGGATTAGAATAGGATTGATTTTAAGAAACTAttgtatttgtaaat tttgtttgatatctttaaatTGTACCATACCTATTCAACAATAAgaaata caaaatcaataaataac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016833TCONS_00016833Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016833-proteinTCONS_00016833-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:18724..23790 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RNF185E3 ubiquitin-protein ligase RNF185 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.78 8.94 7.08 7.22 17.84 11.3 20.48 22.33 19.63 20.61 19.41 14.17 14.85 15.37 10.62 11.51 18.24 16.48 13.44 14.61 21.7 22.6 18.12 20.46 17.34 20.36 14.17 9.96 11.61 11.85