TCONS_00016833-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016833-protein
Unique NameTCONS_00016833-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016833-protein ID=TCONS_00016833-protein|Name=TCONS_00016833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
PDYRSADNNTAEPPPPTAQSQSGPTPSTAPPQSSTGEEERNDSTFECNIC
LDIARDAVISLCGHLFCWPCLHQWIETRPTRPVCPVCKAGISKDKVIPVY
GKDNPDRKDPREKEMPPRPQAQRPEPETNYNMFNNSFFGGFGPGFGMPGQ
NNGGLQFSFGIGAFPFTFLSWQFGAGNNNNNNQRNGQPQTPQEREEQFLS
RAFLWVAIFFIIWLILA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009430XLOC_009430Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016833TCONS_00016833Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 47..87
e-value: 7.9E-8
score: 42.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 47..88
score: 12.917
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 46..91
e-value: 8.07011E-11
score: 53.6036
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 42..104
e-value: 1.8E-18
score: 65.3
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 46..92
e-value: 2.0E-9
score: 37.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 42..100
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 62..71

Blast
[Close]
BLAST of TCONS_00016833-protein vs. Swiss-Prot (Human)
Match: RN185 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.941e-61
Identity = 102/181 (56.35%), Postives = 119/181 (65.75%), Query Frame = 0 
Query:   37 EEERNDSTFECNICLDIARDAVISLCGHLFCWPCLHQWIETRPTRPVCPVCKAGISKDKVIPVYGKDNPDRKDPREKEMPPRPQAQRPEPETNYNMFNNSFFGGFGPGFGMPGQNNGGLQFSFGIGAFPFTFLSWQFGAGNNNNNNQRNGQPQTPQEREEQFLSRAFLWVAIFFIIWLILA 217
            E    DSTFECNICLD A+DAVISLCGHLFCWPCLHQW+ETRP R VCPVCKAGIS+DKVIP+YG+ +  ++DPREK  PPRPQ QRPEPE                        +GG Q SFGIGAFPF   +  F   N N+       P TPQ  +EQFLSR FL+VA+  + WL++A
Sbjct:   29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK-TPPRPQGQRPEPENRGGFQGFG-------------FGDGGFQMSFGIGAFPFGIFATAF---NINDGRPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLLIA 192
The following BLAST results are available for this feature:
BLAST of TCONS_00016833-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1852.941e-6156.35E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens... [more]
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