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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012536 ID=TCONS_00012536|Name=TCONS_00012536|organism=Clytia hemisphaerica|type=transcript|length=1931bpRun BLAST on NCBI protein sequence of TCONS_00012536-protein >TCONS_00012536-protein ID=TCONS_00012536-protein|Name=TCONS_00012536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp MARISYATDFEKSVLVNNFEKRGWNHVNPEDEWHFYWASVGTVRQIFNIERun BLAST on NCBI transcript from alignment at sc0000145:463075..479222+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012536 ID=TCONS_00012536|Name=TCONS_00012536|organism=Clytia hemisphaerica|type=transcript|length=16148bp|location=Sequence derived from alignment at sc0000145:463075..479222+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:463075..479222+ >TCONS_00012536 ID=TCONS_00012536|Name=TCONS_00012536|organism=Clytia hemisphaerica|type=CDS|length=17472bp|location=Sequence derived from alignment at sc0000145:463075..479222+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012536 vs. Swiss-Prot (Human)
Match: TTLL1 (Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1) HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0 Identity = 268/385 (69.61%), Postives = 332/385 (86.23%), Query Frame = 2
Query: 50 ARISYATDFEKSVLVNNFEKRGWNHVNPEDEWHFYWASVGTVRQIFNIENGYRLNENQVVNHFPNHYELTRKDSMLKNLKRYRKELEKEGNPFAEKDDNGKYTYLDFVPTTFLLPGDYNLFVEEFRKNPSSTWIMKPAARSQGVGIFLINRISQIKKWSKDGKSGN-VPHSSKDSYVISRYIDNPLLIGGKKFDLRLYVLVTSYRPLKCYMYKLGFCRFCTVKYNADVNELDNMFVHLTNVSIQKHGDEYNSTHGGKWTIENLRLYLEGTRGHEVTNKLFDDIHWLIVHSLKSVSGVMVNDRHCYEVYGYDIIIDDFLKPWIIEVNASPSLSATTSADRIMKFSLVNDVINIVVPPGEFPDVRREKIPKKEHLGNFDVLLDEEVA 1201
++ + TD EKSVL+NNFEKRGW V ++W+FYW SV T+R +F++E GYRL+++Q+VNHFPNHYELTRKD M+KN+KRYRKELEKEG+P AEKD+NGKY YLDFVP T++LP DYNLFVEEFRK+PSSTWIMKP ++QG GIFLIN++SQIKKWS+D K+ + V S+K++YVIS YI+NPLLIGG+KFDLRLYVLV++YRPL+CYMYKLGFCRFCTVKY +ELDNMFVHLTNV+IQKHG++YN HGGKWT+ NLRLYLE TRG EVT+KLFD+IHW+IV SLK+V+ VM ND+HC+E YGYDIIIDD LKPW+IEVNASPSL+++T+ DRI+K++L+ND +NI VP GE PD + K P KE LGN+++L DEE+A
Sbjct: 3 GKVKWVTDIEKSVLINNFEKRGWVQVTENEDWNFYWMSVQTIRNVFSVEAGYRLSDDQIVNHFPNHYELTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPCGKAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSNKEAYVISLYINNPLLIGGRKFDLRLYVLVSTYRPLRCYMYKLGFCRFCTVKYTPSTSELDNMFVHLTNVAIQKHGEDYNHIHGGKWTVSNLRLYLESTRGKEVTSKLFDEIHWIIVQSLKAVAPVMNNDKHCFECYGYDIIIDDKLKPWLIEVNASPSLTSSTANDRILKYNLINDTLNIAVPNGEIPDCKWNKSPPKEVLGNYEILYDEELA 387 The following BLAST results are available for this feature:
BLAST of TCONS_00012536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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